Wall clock time and date at job start Tue Mar 31 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47171 * 2 1 4 4 C 1.53004 * 109.47023 * 239.99819 * 2 1 3 5 5 C 1.52998 * 109.46720 * 120.00053 * 2 1 3 6 6 H 1.08998 * 109.47277 * 294.14593 * 5 2 1 7 7 C 1.53002 * 109.47137 * 174.15076 * 5 2 1 8 8 C 1.52997 * 109.47497 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.47023 * 59.99635 * 8 7 5 10 10 C 1.52997 * 109.47270 * 299.99965 * 9 8 7 11 11 C 1.52997 * 109.47069 * 60.00063 * 10 9 8 12 12 H 1.08995 * 109.47510 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47100 * 59.99634 * 11 10 9 14 14 C 1.34782 * 119.99622 * 90.04286 * 13 11 10 15 15 O 1.21279 * 120.00028 * 359.97438 * 14 13 11 16 16 C 1.50702 * 120.00095 * 180.02562 * 14 13 11 17 17 C 1.52996 * 109.47378 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47254 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00071 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00271 * 179.72272 * 18 17 16 21 21 N 1.31509 * 119.99684 * 0.27787 * 20 18 17 22 22 Si 1.86796 * 120.00294 * 180.27381 * 20 18 17 23 23 H 1.48497 * 109.46957 * 60.00113 * 22 20 18 24 24 H 1.48499 * 109.47212 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47087 * 300.00504 * 22 20 18 26 26 H 1.08992 * 109.47219 * 299.99973 * 1 2 3 27 27 H 1.09001 * 109.46950 * 59.99986 * 1 2 3 28 28 H 1.09003 * 109.47099 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47108 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47195 * 299.99864 * 3 2 1 31 31 H 1.09001 * 109.47222 * 60.00015 * 3 2 1 32 32 H 1.08998 * 109.47030 * 315.08089 * 4 2 1 33 33 H 1.08992 * 109.46869 * 75.08603 * 4 2 1 34 34 H 1.08999 * 109.46727 * 195.08078 * 4 2 1 35 35 H 1.09003 * 109.47267 * 59.99004 * 7 5 2 36 36 H 1.08998 * 109.46643 * 299.99906 * 7 5 2 37 37 H 1.08998 * 109.47169 * 299.99671 * 8 7 5 38 38 H 1.09004 * 109.47262 * 179.97438 * 8 7 5 39 39 H 1.09001 * 109.47110 * 180.02562 * 9 8 7 40 40 H 1.08998 * 109.47352 * 60.00505 * 9 8 7 41 41 H 1.08998 * 109.47374 * 300.00527 * 10 9 8 42 42 H 1.08998 * 109.47125 * 179.97438 * 10 9 8 43 43 H 0.96995 * 120.00325 * 270.04025 * 13 11 10 44 44 H 1.09005 * 109.46904 * 59.99251 * 16 14 13 45 45 H 1.09002 * 109.46709 * 300.00193 * 16 14 13 46 46 H 1.09002 * 109.46803 * 59.99812 * 17 16 14 47 47 H 1.08998 * 109.46853 * 300.00014 * 17 16 14 48 48 H 0.96999 * 120.00182 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2493 6 1 1.7647 -0.1505 2.1361 7 6 3.5629 -0.8499 1.1780 8 6 4.0729 -1.5706 2.4275 9 6 3.4464 -2.9643 2.5038 10 6 1.9235 -2.8357 2.5752 11 6 1.4134 -2.1150 1.3257 12 1 0.3285 -2.0238 1.3763 13 7 1.7835 -2.8826 0.1340 14 6 0.9491 -3.8262 -0.3457 15 8 -0.1078 -4.0401 0.2095 16 6 1.3298 -4.6163 -1.5712 17 6 0.2175 -5.6135 -1.9012 18 6 0.5980 -6.4031 -3.1270 19 1 1.5393 -6.2130 -3.6211 20 6 -0.2528 -7.3726 -3.6141 21 7 -1.3988 -7.6045 -3.0122 22 14 0.2223 -8.3566 -5.1292 23 1 1.4876 -9.0884 -4.8673 24 1 -0.8552 -9.3279 -5.4466 25 1 0.4120 -7.4354 -6.2784 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.4751 -1.6423 -1.3931 33 1 1.9118 -0.0767 -2.1187 34 1 3.0967 -0.9587 -1.1257 35 1 4.0093 0.1431 1.1240 36 1 3.8381 -1.4206 0.2911 37 1 3.7977 -0.9995 3.3142 38 1 5.1579 -1.6626 2.3765 39 1 3.8094 -3.4776 3.3943 40 1 3.7216 -3.5355 1.6172 41 1 1.6482 -2.2645 3.4618 42 1 1.4771 -3.8286 2.6291 43 1 2.6288 -2.7118 -0.3099 44 1 2.2574 -5.1566 -1.3815 45 1 1.4706 -3.9371 -2.4121 46 1 -0.7102 -5.0734 -2.0907 47 1 0.0772 -6.2926 -1.0602 48 1 -1.9975 -8.2863 -3.3551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330891264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:49 Heat of formation + Delta-G solvation = -70.520273 kcal Electronic energy + Delta-G solvation = -23903.407541 eV Core-core repulsion = 20763.941349 eV Total energy + Delta-G solvation = -3139.466193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83491 -38.21661 -35.85325 -33.48886 -33.35707 -31.12590 -30.22747 -29.25891 -27.33064 -27.19736 -25.60143 -22.98504 -22.57991 -21.64627 -20.05743 -19.03862 -18.58644 -16.92168 -16.06310 -15.70607 -15.37090 -15.07106 -14.50159 -14.38967 -14.25562 -13.95582 -13.75170 -13.46987 -13.02926 -12.61548 -12.50976 -12.39017 -12.25947 -12.10018 -11.81755 -11.70815 -11.62997 -11.34983 -11.12236 -11.04370 -10.94325 -10.88798 -10.68020 -10.59961 -10.41421 -10.10350 -9.91904 -9.86472 -9.60938 -9.13037 -8.93462 -8.44673 -8.28403 -5.93283 -3.97514 3.34700 3.36078 3.40574 3.42152 3.68991 4.47738 4.49657 4.50639 4.60332 4.85223 4.97335 5.01551 5.19333 5.25141 5.32252 5.41556 5.42381 5.45219 5.52973 5.57266 5.60747 5.65120 5.69661 5.76532 5.79850 5.86257 5.92481 5.96405 6.04698 6.06602 6.10701 6.14754 6.24121 6.25686 6.27831 6.29733 6.37486 6.43196 6.47510 6.92407 6.95280 7.77276 7.90548 8.00640 8.10811 8.42488 8.89048 9.11398 9.65794 11.17629 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.004070 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.528199 B = 6878.318396 C = 7278.021239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.163 4.163 5 C -0.083 4.083 6 H 0.078 0.922 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.131 4.131 11 C 0.147 3.853 12 H 0.092 0.908 13 N -0.731 5.731 14 C 0.508 3.492 15 O -0.536 6.536 16 C -0.132 4.132 17 C 0.039 3.961 18 C -0.527 4.527 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.397 0.603 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.023 0.977 47 H 0.022 0.978 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.289 17.718 9.842 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.220 4.220 5 C -0.101 4.101 6 H 0.097 0.903 7 C -0.157 4.157 8 C -0.156 4.156 9 C -0.156 4.156 10 C -0.170 4.170 11 C 0.042 3.958 12 H 0.110 0.890 13 N -0.387 5.387 14 C 0.296 3.704 15 O -0.412 6.412 16 C -0.172 4.172 17 C 0.001 3.999 18 C -0.565 4.565 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.233 0.767 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.339 17.437 10.233 22.708 hybrid contribution 0.646 -0.473 -0.996 1.278 sum 10.985 16.964 9.237 22.221 Atomic orbital electron populations 1.21972 0.94506 1.02692 1.01241 1.20463 0.95675 0.94784 0.94999 1.21926 1.00870 0.95600 1.01426 1.22460 1.01195 1.01856 0.96475 1.21463 0.95198 0.95298 0.98187 0.90319 1.21748 0.95135 1.00591 0.98254 1.21549 0.99632 0.96362 0.98072 1.21497 0.95490 0.96705 1.01911 1.21933 0.95813 1.01569 0.97677 1.20907 1.00476 0.89472 0.84938 0.88980 1.46603 1.22920 1.39186 1.30022 1.21484 0.83670 0.79071 0.86159 1.90658 1.23990 1.66177 1.60335 1.21877 1.03140 0.98946 0.93209 1.18866 0.92128 0.92495 0.96381 1.21193 1.04272 1.19245 1.11818 0.92739 1.25012 0.95014 0.97163 0.97113 1.69985 1.09752 1.32933 1.40188 0.86671 0.78027 0.79934 0.83402 1.20281 1.21299 1.20273 0.93045 0.92857 0.91585 0.92629 0.92840 0.93010 0.90371 0.93262 0.92436 0.91647 0.91477 0.92191 0.92229 0.92345 0.91753 0.91680 0.91335 0.76662 0.90497 0.90463 0.95887 0.95914 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.90 37.16 0.29 -1.37 16 2 C -0.06 -0.58 0.58 -154.51 -0.09 -0.67 16 3 C -0.14 -1.17 8.19 37.15 0.30 -0.86 16 4 C -0.16 -1.72 6.95 37.16 0.26 -1.46 16 5 C -0.08 -0.78 1.52 -90.62 -0.14 -0.92 16 6 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.12 -0.99 4.34 -26.73 -0.12 -1.10 16 8 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 9 C -0.12 -1.19 5.77 -26.73 -0.15 -1.34 16 10 C -0.13 -1.54 5.64 -26.73 -0.15 -1.69 16 11 C 0.15 1.81 1.79 -67.93 -0.12 1.68 16 12 H 0.09 1.35 5.61 -51.93 -0.29 1.06 16 13 N -0.73 -9.95 1.98 -53.80 -0.11 -10.06 16 14 C 0.51 9.56 7.16 -10.98 -0.08 9.48 16 15 O -0.54 -12.41 15.56 5.56 0.09 -12.33 16 16 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 17 C 0.04 1.05 4.26 -27.89 -0.12 0.93 16 18 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.92 6.34 -51.93 -0.33 0.59 16 29 H 0.05 0.42 6.59 -51.93 -0.34 0.08 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 1.00 5.27 -51.93 -0.27 0.73 16 33 H 0.05 0.51 8.05 -51.93 -0.42 0.09 16 34 H 0.06 0.53 5.19 -51.93 -0.27 0.26 16 35 H 0.06 0.48 6.59 -51.93 -0.34 0.14 16 36 H 0.07 0.57 4.68 -51.93 -0.24 0.32 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.70 7.57 -51.93 -0.39 0.31 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.40 4.58 5.16 -40.82 -0.21 4.37 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -32.36 352.93 -8.39 -40.76 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.57 Total: 1.42 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -0.84 Total: -15.01 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.63 Total: -36.93 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.36 -8.39 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330891264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.764 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds