Wall clock time and date at job start Tue Mar 31 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47158 * 2 1 4 4 C 1.53001 * 109.47221 * 240.00397 * 2 1 3 5 5 C 1.52998 * 109.47239 * 119.99793 * 2 1 3 6 6 H 1.09001 * 109.46981 * 186.15906 * 5 2 1 7 7 C 1.52999 * 109.47587 * 306.16248 * 5 2 1 8 8 C 1.52997 * 109.47213 * 180.02562 * 7 5 2 9 9 C 1.53000 * 109.47127 * 299.99843 * 8 7 5 10 10 C 1.52999 * 109.46946 * 59.99993 * 9 8 7 11 11 C 1.52998 * 109.47587 * 299.99972 * 10 9 8 12 12 H 1.08992 * 109.47190 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.46953 * 300.00047 * 11 10 9 14 14 C 1.34765 * 119.99994 * 269.79038 * 13 11 10 15 15 O 1.21285 * 120.00428 * 0.02562 * 14 13 11 16 16 C 1.50701 * 119.99998 * 180.02562 * 14 13 11 17 17 C 1.53005 * 109.46948 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.46948 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00112 * 180.27370 * 18 17 16 21 21 N 1.31510 * 120.00124 * 359.72501 * 20 18 17 22 22 Si 1.86799 * 120.00176 * 179.72155 * 20 18 17 23 23 H 1.48506 * 109.47041 * 60.00148 * 22 20 18 24 24 H 1.48496 * 109.47227 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47371 * 300.00159 * 22 20 18 26 26 H 1.09010 * 109.47260 * 289.86035 * 1 2 3 27 27 H 1.08995 * 109.47577 * 49.85737 * 1 2 3 28 28 H 1.09002 * 109.47459 * 169.86107 * 1 2 3 29 29 H 1.08993 * 109.47349 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46809 * 300.00406 * 3 2 1 31 31 H 1.09003 * 109.46744 * 59.99713 * 3 2 1 32 32 H 1.09005 * 109.46361 * 299.99708 * 4 2 1 33 33 H 1.09000 * 109.47155 * 59.99803 * 4 2 1 34 34 H 1.09001 * 109.46734 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.46659 * 59.99418 * 7 5 2 36 36 H 1.09005 * 109.46860 * 300.00216 * 7 5 2 37 37 H 1.09002 * 109.46653 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47288 * 60.00234 * 8 7 5 39 39 H 1.09009 * 109.47206 * 300.00217 * 9 8 7 40 40 H 1.09000 * 109.47347 * 180.02562 * 9 8 7 41 41 H 1.09005 * 109.46860 * 179.97438 * 10 9 8 42 42 H 1.09000 * 109.47096 * 60.00692 * 10 9 8 43 43 H 0.97000 * 119.99711 * 89.79463 * 13 11 10 44 44 H 1.08994 * 109.47566 * 60.00046 * 16 14 13 45 45 H 1.09000 * 109.47172 * 299.99530 * 16 14 13 46 46 H 1.09001 * 109.47628 * 60.00024 * 17 16 14 47 47 H 1.09001 * 109.46935 * 299.99237 * 17 16 14 48 48 H 0.97003 * 120.00568 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2492 6 1 3.1244 -0.6267 1.3060 7 6 1.4075 -0.0949 2.4937 8 6 1.9181 -0.8158 3.7429 9 6 1.5390 -2.2962 3.6683 10 6 2.1714 -2.9224 2.4238 11 6 1.6609 -2.2016 1.1745 12 1 2.1111 -2.6481 0.2880 13 7 0.2034 -2.3293 1.0984 14 6 -0.3486 -3.3698 0.4437 15 8 0.3611 -4.2009 -0.0822 16 6 -1.8478 -3.5008 0.3649 17 6 -2.2089 -4.7593 -0.4269 18 6 -3.7082 -4.8899 -0.5062 19 1 -4.3402 -4.1497 -0.0383 20 6 -4.2729 -5.9577 -1.1709 21 7 -3.5033 -6.8593 -1.7404 22 14 -6.1312 -6.1239 -1.2625 23 1 -6.7015 -4.9344 -1.9447 24 1 -6.4817 -7.3477 -2.0270 25 1 -6.6879 -6.2211 0.1107 26 1 -0.3634 0.3492 0.9666 27 1 -0.3634 0.6625 -0.7855 28 1 -0.3634 -1.0116 -0.1809 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7207 -1.2494 35 1 0.3232 -0.1895 2.4368 36 1 1.6780 0.9597 2.5471 37 1 1.4678 -0.3693 4.6295 38 1 3.0024 -0.7208 3.7996 39 1 0.4545 -2.3911 3.6117 40 1 1.9023 -2.8097 4.5585 41 1 1.9016 -3.9772 2.3709 42 1 3.2558 -2.8276 2.4805 43 1 -0.3642 -1.6648 1.5193 44 1 -2.2634 -2.6255 -0.1341 45 1 -2.2595 -3.5749 1.3715 46 1 -1.7935 -5.6346 0.0724 47 1 -1.7973 -4.6856 -1.4336 48 1 -3.9006 -7.6104 -2.2083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330891265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:52 Heat of formation + Delta-G solvation = -69.868650 kcal Electronic energy + Delta-G solvation = -23904.326716 eV Core-core repulsion = 20764.888780 eV Total energy + Delta-G solvation = -3139.437936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84592 -38.21936 -35.85036 -33.49978 -33.36911 -31.12942 -30.22591 -29.26520 -27.32296 -27.18449 -25.60430 -22.98407 -22.58063 -21.64493 -20.05933 -19.04904 -18.59257 -16.92606 -16.07085 -15.70973 -15.37645 -15.07600 -14.50447 -14.38973 -14.24755 -13.94932 -13.74889 -13.46981 -13.03373 -12.59663 -12.50599 -12.39527 -12.26436 -12.09950 -11.81805 -11.71133 -11.63667 -11.35181 -11.12461 -11.04635 -10.94111 -10.88878 -10.67129 -10.60044 -10.42252 -10.10521 -9.92093 -9.86427 -9.61183 -9.13315 -8.94029 -8.42918 -8.28415 -5.93347 -3.97636 3.33879 3.35993 3.40553 3.42099 3.68046 4.47866 4.49755 4.50821 4.61239 4.85401 4.97529 5.01571 5.19418 5.25029 5.32719 5.41480 5.42514 5.45378 5.53020 5.57848 5.60478 5.64204 5.70203 5.77675 5.79753 5.86395 5.93122 5.96279 6.04592 6.07361 6.10950 6.14394 6.24124 6.25591 6.27609 6.29580 6.37326 6.43393 6.48003 6.91358 6.94928 7.77126 7.90334 7.99486 8.10619 8.42263 8.88158 9.11208 9.65711 11.17538 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.004071 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.636524 B = 6876.998492 C = 7276.758750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.147 4.147 5 C -0.082 4.082 6 H 0.078 0.922 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.131 4.131 11 C 0.147 3.853 12 H 0.093 0.907 13 N -0.731 5.731 14 C 0.507 3.493 15 O -0.536 6.536 16 C -0.132 4.132 17 C 0.039 3.961 18 C -0.527 4.527 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.397 0.603 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.517 17.209 9.135 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.204 4.204 5 C -0.101 4.101 6 H 0.097 0.903 7 C -0.157 4.157 8 C -0.156 4.156 9 C -0.156 4.156 10 C -0.170 4.170 11 C 0.042 3.958 12 H 0.111 0.889 13 N -0.387 5.387 14 C 0.296 3.704 15 O -0.411 6.411 16 C -0.172 4.172 17 C 0.001 3.999 18 C -0.565 4.565 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.234 0.766 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.024 16.416 8.633 22.664 hybrid contribution -1.250 0.204 0.163 1.277 sum 11.774 16.621 8.796 22.187 Atomic orbital electron populations 1.22529 0.94679 1.03973 1.01310 1.20457 0.96019 0.94758 0.94652 1.21924 1.00576 0.95783 1.01545 1.21968 1.00422 1.01279 0.96753 1.21459 1.00363 0.94015 0.94301 0.90323 1.21735 1.00662 0.99352 0.93937 1.21549 1.00838 0.95697 0.97541 1.21497 1.01212 0.95220 0.97674 1.21933 0.99889 1.00456 0.94713 1.20914 0.81883 0.94441 0.98585 0.88943 1.46630 1.06769 1.28058 1.57210 1.21487 0.92229 0.79947 0.76745 1.90660 1.64000 1.40747 1.45699 1.21880 0.88728 1.03726 1.02854 1.18870 0.95539 0.90221 0.95249 1.21194 0.91835 1.08813 1.34686 0.92735 1.25010 0.97910 0.95835 0.95543 1.69986 1.34842 1.12618 1.35414 0.86671 0.85884 0.77404 0.78075 1.20272 1.21302 1.20282 0.92535 0.93255 0.89944 0.93012 0.92852 0.92650 0.91576 0.92865 0.93050 0.91511 0.91660 0.92231 0.92196 0.91760 0.92340 0.91336 0.91671 0.76597 0.90443 0.90480 0.95906 0.95877 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 6.89 37.15 0.26 -1.52 16 2 C -0.06 -0.58 0.58 -154.51 -0.09 -0.67 16 3 C -0.14 -1.18 8.23 37.16 0.31 -0.87 16 4 C -0.15 -1.67 7.93 37.16 0.29 -1.37 16 5 C -0.08 -0.78 1.52 -90.62 -0.14 -0.92 16 6 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.12 -0.99 4.31 -26.73 -0.12 -1.10 16 8 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 9 C -0.12 -1.18 5.77 -26.73 -0.15 -1.34 16 10 C -0.13 -1.53 5.64 -26.73 -0.15 -1.68 16 11 C 0.15 1.80 1.78 -67.93 -0.12 1.68 16 12 H 0.09 1.36 5.61 -51.93 -0.29 1.07 16 13 N -0.73 -9.92 1.96 -53.81 -0.11 -10.03 16 14 C 0.51 9.53 7.16 -10.99 -0.08 9.45 16 15 O -0.54 -12.38 15.56 5.55 0.09 -12.29 16 16 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 17 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 18 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 22 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.06 0.52 5.58 -51.92 -0.29 0.23 16 27 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 28 H 0.08 1.05 4.89 -51.93 -0.25 0.79 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.42 6.60 -51.93 -0.34 0.08 16 32 H 0.07 0.92 6.33 -51.93 -0.33 0.60 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.57 4.72 -51.93 -0.25 0.32 16 36 H 0.06 0.49 6.60 -51.93 -0.34 0.14 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.70 7.56 -51.92 -0.39 0.31 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.40 4.58 5.20 -40.82 -0.21 4.37 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -32.32 353.03 -8.40 -40.72 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.58 Total: 1.47 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.84 Total: -15.09 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.63 Total: -36.89 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.32 -8.40 -40.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330891265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.149 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds