Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46787 * 2 1 4 4 C 1.53000 * 109.47360 * 119.99718 * 2 1 3 5 5 C 1.52995 * 109.47281 * 240.00030 * 2 1 3 6 6 H 1.08998 * 109.46951 * 293.44583 * 5 2 1 7 7 C 1.53009 * 109.47138 * 53.44147 * 5 2 1 8 8 C 1.52995 * 109.47138 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.47313 * 300.00344 * 8 7 5 10 10 C 1.52999 * 109.47285 * 59.99785 * 9 8 7 11 11 C 1.52995 * 109.47120 * 300.00333 * 10 9 8 12 12 H 1.08998 * 109.46951 * 299.99592 * 11 10 9 13 13 N 1.46506 * 109.47215 * 180.02562 * 11 10 9 14 14 C 1.34779 * 120.00091 * 91.03788 * 13 11 10 15 15 O 1.21278 * 119.99947 * 0.02562 * 14 13 11 16 16 C 1.50702 * 119.99677 * 180.02562 * 14 13 11 17 17 C 1.53003 * 109.46784 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.46918 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00045 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99898 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00033 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47315 * 89.99608 * 22 20 18 24 24 H 1.48496 * 109.47566 * 209.99930 * 22 20 18 25 25 H 1.48502 * 109.47448 * 330.00008 * 22 20 18 26 26 H 1.08996 * 109.47383 * 59.99787 * 1 2 3 27 27 H 1.09007 * 109.47244 * 300.00186 * 1 2 3 28 28 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47002 * 60.00043 * 3 2 1 30 30 H 1.08999 * 109.46996 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46762 * 299.99746 * 3 2 1 32 32 H 1.08996 * 109.46829 * 74.47915 * 4 2 1 33 33 H 1.08996 * 109.47382 * 194.47678 * 4 2 1 34 34 H 1.09004 * 109.46948 * 314.47526 * 4 2 1 35 35 H 1.08997 * 109.47017 * 300.00421 * 7 5 2 36 36 H 1.09008 * 109.46712 * 60.00451 * 7 5 2 37 37 H 1.09000 * 109.47410 * 60.00176 * 8 7 5 38 38 H 1.09001 * 109.47058 * 180.02562 * 8 7 5 39 39 H 1.09007 * 109.47253 * 179.97438 * 9 8 7 40 40 H 1.08998 * 109.47187 * 299.99947 * 9 8 7 41 41 H 1.09000 * 109.46858 * 60.00523 * 10 9 8 42 42 H 1.09000 * 109.47490 * 179.97438 * 10 9 8 43 43 H 0.96999 * 119.99554 * 271.04265 * 13 11 10 44 44 H 1.08998 * 109.46902 * 300.00223 * 16 14 13 45 45 H 1.08996 * 109.47389 * 60.00528 * 16 14 13 46 46 H 1.09001 * 109.46783 * 299.99920 * 17 16 14 47 47 H 1.08996 * 109.47242 * 59.99807 * 17 16 14 48 48 H 0.96993 * 120.00259 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 2.0400 -0.7212 -1.2492 6 1 1.7756 -1.7771 -1.1925 7 6 1.3999 -0.1013 -2.4931 8 6 1.9104 -0.8221 -3.7423 9 6 3.4315 -0.6805 -3.8271 10 6 4.0716 -1.3004 -2.5833 11 6 3.5610 -0.5796 -1.3340 12 1 3.8251 0.4764 -1.3905 13 7 4.1744 -1.1727 -0.1431 14 6 5.3291 -0.6730 0.3401 15 8 5.8603 0.2679 -0.2108 16 6 5.9603 -1.2836 1.5649 17 6 7.2518 -0.5349 1.9000 18 6 7.8833 -1.1458 3.1244 19 1 7.4105 -1.9839 3.6147 20 6 9.0647 -0.6347 3.6186 21 7 9.6407 0.3856 3.0212 22 14 9.8470 -1.3914 5.1366 23 1 10.7761 -2.4751 4.7267 24 1 10.5999 -0.3480 5.8779 25 1 8.7871 -1.9531 6.0121 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.9019 -1.7958 1.1302 33 1 3.0993 -0.5041 1.3871 34 1 1.4824 -0.3773 2.1204 35 1 0.3163 -0.2018 -2.4324 36 1 1.6644 0.9546 -2.5498 37 1 1.6465 -1.8782 -3.6859 38 1 1.4548 -0.3802 -4.6284 39 1 3.7953 -1.1945 -4.7169 40 1 3.6955 0.3755 -3.8835 41 1 3.8076 -2.3564 -2.5268 42 1 5.1552 -1.1999 -2.6438 43 1 3.7494 -1.9250 0.2977 44 1 5.2694 -1.2096 2.4047 45 1 6.1873 -2.3321 1.3723 46 1 7.9427 -0.6085 1.0601 47 1 7.0245 0.5136 2.0926 48 1 10.4719 0.7449 3.3686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330891266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = -76.098402 kcal Electronic energy + Delta-G solvation = -23672.374796 eV Core-core repulsion = 20532.666717 eV Total energy + Delta-G solvation = -3139.708078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61365 -38.32620 -35.83783 -33.94916 -33.40675 -31.06262 -29.99308 -29.06895 -27.36960 -27.27532 -25.59043 -22.94665 -22.67215 -21.13704 -20.13860 -19.67243 -18.49051 -16.77592 -16.13810 -15.63159 -15.54087 -14.92867 -14.50953 -14.41398 -14.12586 -14.04110 -13.74730 -13.46367 -13.12276 -12.78532 -12.64717 -12.26709 -12.13759 -12.00010 -11.85501 -11.69234 -11.51729 -11.31903 -11.14648 -11.11600 -10.91460 -10.82083 -10.73956 -10.58642 -10.41189 -10.18804 -10.04200 -9.91428 -9.61946 -9.12480 -8.92775 -8.46230 -8.29093 -5.93814 -3.97999 3.32886 3.34697 3.40588 3.43136 3.63133 4.44058 4.49279 4.52243 4.68009 4.85763 4.98447 5.01080 5.18757 5.24698 5.36568 5.38119 5.41122 5.44304 5.47826 5.56267 5.58471 5.68318 5.69485 5.77874 5.80249 5.87256 5.94717 5.97608 6.01383 6.05892 6.08264 6.10917 6.20819 6.25885 6.27161 6.31686 6.36634 6.42647 6.50129 6.89773 6.94602 7.77148 7.89924 7.98955 8.10247 8.41931 8.87360 9.11038 9.65400 11.17145 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.003840 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.420559 B = 7289.449050 C = 7885.423257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.148 4.148 4 C -0.157 4.157 5 C -0.082 4.082 6 H 0.071 0.929 7 C -0.115 4.115 8 C -0.120 4.120 9 C -0.117 4.117 10 C -0.131 4.131 11 C 0.146 3.854 12 H 0.094 0.906 13 N -0.736 5.736 14 C 0.508 3.492 15 O -0.535 6.535 16 C -0.132 4.132 17 C 0.038 3.962 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.397 0.603 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.578 -3.459 -10.950 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.205 4.205 4 C -0.215 4.215 5 C -0.101 4.101 6 H 0.090 0.910 7 C -0.153 4.153 8 C -0.157 4.157 9 C -0.155 4.155 10 C -0.169 4.169 11 C 0.041 3.959 12 H 0.112 0.888 13 N -0.390 5.390 14 C 0.297 3.703 15 O -0.411 6.411 16 C -0.172 4.172 17 C 0.001 3.999 18 C -0.565 4.565 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.233 0.767 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.012 -2.641 -11.321 23.143 hybrid contribution 0.279 -0.826 1.034 1.353 sum -19.732 -3.467 -10.287 22.521 Atomic orbital electron populations 1.21961 0.95000 1.01411 1.01583 1.20472 0.94908 0.95830 0.94750 1.22009 1.02124 0.95114 1.01257 1.22342 1.03243 0.99338 0.96552 1.21475 0.94231 0.99852 0.94531 0.91038 1.21675 0.99925 1.00178 0.93485 1.21564 0.95873 1.00583 0.97710 1.21497 0.95071 1.01349 0.97586 1.21949 1.01027 0.99618 0.94337 1.20964 0.91048 0.99320 0.84518 0.88832 1.46582 1.25583 1.36633 1.30234 1.21493 0.79476 0.83217 0.86117 1.90659 1.61807 1.28119 1.60489 1.21881 1.00968 1.01141 0.93173 1.18879 0.89204 0.95454 0.96409 1.21234 1.07330 1.16084 1.11827 0.92664 1.25018 0.97156 0.95014 0.97162 1.69997 1.18499 1.24124 1.40236 0.86607 0.79420 0.78873 0.83139 1.20699 1.21238 1.19896 0.92483 0.92888 0.92940 0.92938 0.91623 0.92803 0.93064 0.90318 0.93154 0.91389 0.91499 0.92136 0.92152 0.92049 0.91810 0.92153 0.91396 0.76748 0.90407 0.90425 0.95907 0.95865 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 7.89 37.16 0.29 -0.90 16 2 C -0.06 -0.59 0.58 -154.51 -0.09 -0.68 16 3 C -0.15 -1.69 7.67 37.16 0.29 -1.41 16 4 C -0.16 -1.67 7.03 37.16 0.26 -1.41 16 5 C -0.08 -0.79 1.33 -90.62 -0.12 -0.91 16 6 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 7 C -0.11 -0.97 4.45 -26.73 -0.12 -1.09 16 8 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 9 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 10 C -0.13 -1.55 5.53 -26.73 -0.15 -1.70 16 11 C 0.15 1.82 1.45 -67.93 -0.10 1.72 16 12 H 0.09 1.41 5.57 -51.93 -0.29 1.12 16 13 N -0.74 -10.14 2.78 -53.81 -0.15 -10.29 16 14 C 0.51 9.63 7.14 -10.98 -0.08 9.55 16 15 O -0.54 -12.47 15.54 5.56 0.09 -12.38 16 16 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 17 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 18 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 19 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 22 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.06 0.44 6.33 -51.93 -0.33 0.11 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.94 6.33 -51.93 -0.33 0.61 16 31 H 0.05 0.55 6.62 -51.93 -0.34 0.21 16 32 H 0.05 0.47 7.46 -51.93 -0.39 0.08 16 33 H 0.08 1.01 5.20 -51.93 -0.27 0.74 16 34 H 0.05 0.52 8.06 -51.93 -0.42 0.11 16 35 H 0.07 0.51 6.33 -51.93 -0.33 0.18 16 36 H 0.07 0.61 6.62 -51.92 -0.34 0.26 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.40 4.53 6.74 -40.82 -0.27 4.25 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -32.57 356.95 -8.55 -41.12 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.76 Total: 1.22 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.82 Total: -14.94 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.59 Total: -37.18 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.57 -8.55 -41.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330891266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.978 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds