Wall clock time and date at job start Tue Mar 31 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.46626 * 119.99539 * 2 1 3 6 6 C 1.53002 * 109.47302 * 60.00257 * 5 2 1 7 7 C 1.52993 * 109.47392 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47024 * 60.00071 * 7 6 5 9 9 C 1.53006 * 109.47164 * 60.00057 * 8 7 6 10 10 C 1.50695 * 109.47196 * 175.00240 * 9 8 7 11 11 O 1.21283 * 120.00019 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00071 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00251 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47324 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99739 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00390 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99939 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47673 * 89.99309 * 18 16 14 20 20 H 1.48502 * 109.47126 * 209.99746 * 18 16 14 21 21 H 1.48507 * 109.47103 * 329.99525 * 18 16 14 22 22 C 1.52997 * 109.47232 * 299.99958 * 8 7 6 23 23 C 1.52997 * 109.47592 * 300.00035 * 5 2 1 24 24 H 1.09004 * 109.47297 * 300.00280 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 29 29 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 30 30 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 31 31 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 32 32 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 5 2 1 34 34 H 1.09004 * 109.47006 * 59.99583 * 6 5 2 35 35 H 1.09002 * 109.46838 * 300.00086 * 6 5 2 36 36 H 1.09002 * 109.47722 * 300.00185 * 7 6 5 37 37 H 1.09000 * 109.47250 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 39 39 H 1.09007 * 109.46744 * 294.99886 * 9 8 7 40 40 H 1.08995 * 109.46794 * 55.00131 * 9 8 7 41 41 H 0.97000 * 120.00013 * 359.97438 * 12 10 9 42 42 H 1.08997 * 109.46694 * 299.99468 * 13 12 10 43 43 H 1.08998 * 109.47071 * 59.99485 * 13 12 10 44 44 H 0.96999 * 120.00810 * 180.02562 * 17 16 14 45 45 H 1.09004 * 109.47261 * 179.97438 * 22 8 7 46 46 H 1.09002 * 109.47153 * 299.99992 * 22 8 7 47 47 H 1.09000 * 109.47140 * 300.00346 * 23 5 2 48 48 H 1.09002 * 109.47045 * 60.00253 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5299 -2.1637 1.2494 7 6 2.0403 -2.8850 2.4984 8 6 1.5307 -2.1639 3.7478 9 6 0.0006 -2.1639 3.7483 10 6 -0.5013 -1.5635 5.0361 11 8 0.2871 -1.1744 5.8716 12 7 -1.8263 -1.4599 5.2600 13 6 -2.3143 -0.8757 6.5117 14 6 -3.8213 -0.8759 6.5122 15 1 -4.3615 -1.2711 5.6647 16 6 -4.5103 -0.3704 7.5942 17 7 -3.8525 0.1114 8.6260 18 14 -6.3783 -0.3699 7.5945 19 1 -6.8737 -1.6383 8.1869 20 1 -6.8729 0.7776 8.3970 21 1 -6.8735 -0.2485 6.1997 22 6 2.0407 -0.7214 3.7478 23 6 1.5299 0.0001 2.4985 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7216 -1.2489 33 1 3.1300 -0.7208 1.2496 34 1 1.8933 -2.6776 0.3594 35 1 0.4399 -2.1636 1.2493 36 1 3.1303 -2.8851 2.4981 37 1 1.6773 -3.9128 2.4982 38 1 1.8947 -2.6775 4.6377 39 1 -0.3629 -1.5743 2.9066 40 1 -0.3626 -3.1876 3.6588 41 1 -2.4569 -1.7715 4.5919 42 1 -1.9503 -1.4646 7.3536 43 1 -1.9513 0.1482 6.6005 44 1 -4.3372 0.4667 9.3874 45 1 1.6772 -0.2075 4.6377 46 1 3.1307 -0.7214 3.7475 47 1 1.8933 1.0278 2.4985 48 1 0.4399 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331199215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:18 Heat of formation + Delta-G solvation = -88.159601 kcal Electronic energy + Delta-G solvation = -23302.526159 eV Core-core repulsion = 20162.295068 eV Total energy + Delta-G solvation = -3140.231091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29519 -38.54528 -36.05501 -34.09628 -32.30436 -30.85961 -30.76561 -28.09206 -27.42081 -27.35180 -26.22842 -22.90063 -22.29210 -22.28070 -19.86389 -18.82623 -18.15886 -16.95078 -16.07987 -15.53815 -15.21523 -15.09472 -14.51076 -14.29273 -14.17556 -13.98467 -13.80484 -13.32848 -13.16745 -12.81766 -12.41386 -12.33265 -12.19035 -11.95565 -11.93604 -11.73398 -11.55176 -11.54464 -11.18133 -11.06868 -10.97354 -10.87399 -10.77014 -10.69368 -10.57661 -10.29655 -9.95664 -9.74761 -9.72382 -9.37394 -8.83644 -8.70505 -7.81461 -6.15221 -4.21986 3.24689 3.30813 3.33232 3.47566 4.16775 4.40000 4.54018 4.62342 4.68319 4.88837 5.01757 5.09366 5.20767 5.23784 5.37811 5.41090 5.44981 5.50603 5.53512 5.57531 5.62657 5.68318 5.68850 5.74174 5.81573 5.83672 5.86714 5.90914 5.92909 5.99361 6.06037 6.11405 6.18513 6.23263 6.27964 6.37450 6.45965 6.56341 6.65333 6.76852 7.34708 7.51031 7.55091 7.69903 7.99691 8.69058 8.81649 9.18513 9.45163 10.95010 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022659 B = 0.003602 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.403110 B = 7771.431869 C = 8294.758159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.142 4.142 5 C -0.073 4.073 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.067 4.067 9 C -0.141 4.141 10 C 0.497 3.503 11 O -0.555 6.555 12 N -0.716 5.716 13 C 0.250 3.750 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.120 4.120 23 C -0.119 4.119 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.389 0.611 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.265 0.735 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.243 -3.037 -19.157 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.199 4.199 5 C -0.092 4.092 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.086 4.086 9 C -0.181 4.181 10 C 0.282 3.718 11 O -0.435 6.435 12 N -0.364 5.364 13 C 0.129 3.871 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.157 4.157 23 C -0.157 4.157 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.221 0.779 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.758 -2.652 -18.347 21.952 hybrid contribution -1.393 -0.116 -0.213 1.414 sum 10.365 -2.768 -18.559 21.437 Atomic orbital electron populations 1.22003 0.94700 1.01942 1.01785 1.20549 0.95721 0.95268 0.94989 1.21930 1.00684 0.95728 1.01753 1.21921 1.00678 1.00392 0.96932 1.21167 0.99733 0.94545 0.93734 1.21738 1.01232 0.95215 0.97423 1.21596 1.00406 0.98606 0.94574 1.20810 0.93257 0.96875 0.97665 1.21858 0.97294 1.01944 0.97003 1.20564 0.83103 0.79655 0.88457 1.90606 1.55301 1.50226 1.47329 1.46500 1.05807 1.61683 1.22432 1.19062 0.93750 0.93846 0.80448 1.21242 0.90807 1.42305 1.03747 0.91967 1.24951 0.99089 0.94818 0.95169 1.69972 1.35871 1.39795 1.06695 0.86431 0.84660 0.77750 0.78165 1.20474 1.21006 1.19750 1.21678 0.99671 0.95456 0.98921 1.21765 1.01188 0.98772 0.93935 0.92081 0.93147 0.92361 0.92959 0.93078 0.92140 0.92396 0.93088 0.92980 0.91626 0.92220 0.91414 0.92131 0.92257 0.90743 0.89142 0.89905 0.77879 0.95703 0.95678 0.92480 0.89552 0.92841 0.92173 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 7.77 37.16 0.29 -1.07 16 2 C -0.07 -0.58 0.57 -154.51 -0.09 -0.67 16 3 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 4 C -0.14 -1.12 8.12 37.16 0.30 -0.82 16 5 C -0.07 -0.71 1.55 -90.62 -0.14 -0.86 16 6 C -0.12 -1.11 4.22 -26.73 -0.11 -1.23 16 7 C -0.11 -1.18 5.45 -26.74 -0.15 -1.32 16 8 C -0.07 -0.89 2.31 -90.62 -0.21 -1.10 16 9 C -0.14 -1.98 4.47 -27.88 -0.12 -2.10 16 10 C 0.50 9.79 7.55 -10.99 -0.08 9.70 16 11 O -0.55 -13.02 13.97 5.56 0.08 -12.95 16 12 N -0.72 -15.16 5.55 -61.48 -0.34 -15.50 16 13 C 0.25 6.68 5.43 -5.20 -0.03 6.66 16 14 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 15 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 18 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.12 -1.65 5.19 -26.71 -0.14 -1.79 16 23 C -0.12 -1.42 4.23 -26.71 -0.11 -1.53 16 24 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 30 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 35 H 0.07 0.65 4.83 -51.93 -0.25 0.40 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 39 H 0.09 1.14 4.83 -51.93 -0.25 0.89 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 42 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 1.50 5.95 -51.93 -0.31 1.20 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 48 H 0.07 0.85 4.61 -51.93 -0.24 0.61 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -30.71 352.05 -8.36 -39.08 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.41 Total: 4.26 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.71 Total: -10.58 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.40 Total: -41.05 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.71 -8.36 -39.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331199215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.083 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds