Wall clock time and date at job start Tue Mar 31 2020 05:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46821 * 2 1 4 4 C 1.53001 * 109.46821 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46847 * 60.00176 * 4 3 2 6 6 O 1.42901 * 109.47122 * 59.99904 * 5 4 3 7 7 C 1.53002 * 109.46798 * 179.97438 * 5 4 3 8 8 N 1.46901 * 109.47476 * 305.92981 * 7 5 4 9 9 C 1.46850 * 110.99875 * 285.95456 * 8 7 5 10 10 C 1.53032 * 109.52110 * 174.16071 * 9 8 7 11 11 C 1.53119 * 109.27994 * 59.18070 * 10 9 8 12 12 C 1.50701 * 109.52264 * 182.44135 * 11 10 9 13 13 H 1.07992 * 120.00555 * 119.68027 * 12 11 10 14 14 C 1.37882 * 119.99762 * 299.67950 * 12 11 10 15 15 N 1.31517 * 120.00101 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99870 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47309 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47203 * 120.00100 * 16 14 12 19 19 H 1.48501 * 109.47471 * 239.99834 * 16 14 12 20 20 C 1.53113 * 109.15904 * 302.34148 * 11 10 9 21 21 C 1.46845 * 110.99910 * 161.74713 * 8 7 5 22 22 C 1.52996 * 109.47350 * 299.99698 * 5 4 3 23 23 C 1.53001 * 109.46899 * 60.00333 * 22 5 4 24 24 H 1.08996 * 109.47138 * 59.99842 * 1 2 3 25 25 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47019 * 299.99611 * 1 2 3 27 27 H 1.08996 * 109.47138 * 120.00158 * 2 1 3 28 28 H 1.08998 * 109.47006 * 60.00380 * 3 2 1 29 29 H 1.08996 * 109.47394 * 300.00002 * 3 2 1 30 30 H 1.08993 * 109.47479 * 300.00554 * 4 3 2 31 31 H 1.08998 * 109.47132 * 179.97438 * 4 3 2 32 32 H 0.96695 * 114.00263 * 299.99967 * 6 5 4 33 33 H 1.09002 * 109.47021 * 65.93032 * 7 5 4 34 34 H 1.09003 * 109.47010 * 185.92713 * 7 5 4 35 35 H 1.09001 * 109.46138 * 294.17790 * 9 8 7 36 36 H 1.08994 * 109.46267 * 54.13972 * 9 8 7 37 37 H 1.08998 * 109.50143 * 299.23297 * 10 9 8 38 38 H 1.09006 * 109.49717 * 179.11830 * 10 9 8 39 39 H 1.09003 * 109.52182 * 62.25021 * 11 10 9 40 40 H 0.97000 * 120.00125 * 179.97438 * 15 14 12 41 41 H 1.08996 * 109.50816 * 297.71779 * 20 11 10 42 42 H 1.09006 * 109.50206 * 177.59574 * 20 11 10 43 43 H 1.09002 * 109.46019 * 305.85343 * 21 8 7 44 44 H 1.08991 * 109.46771 * 65.82069 * 21 8 7 45 45 H 1.08998 * 109.47090 * 180.02562 * 22 5 4 46 46 H 1.09003 * 109.46892 * 300.00159 * 22 5 4 47 47 H 1.08998 * 109.47132 * 180.02562 * 23 22 5 48 48 H 1.08996 * 109.47138 * 59.99992 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0804 0.7212 -1.2483 6 8 3.6045 1.3947 -2.4154 7 6 5.6105 0.7217 -1.2480 8 7 6.0997 2.0995 -1.1052 9 6 5.9198 2.8537 -2.3523 10 6 6.3034 4.3175 -2.1245 11 6 7.7627 4.3924 -1.6668 12 6 8.1286 5.8266 -1.3831 13 1 8.4508 6.1162 -0.3939 14 6 8.0520 6.7690 -2.3867 15 7 7.6601 6.4162 -3.5916 16 14 8.5048 8.5468 -2.0350 17 1 8.9111 8.6821 -0.6132 18 1 9.6320 8.9534 -2.9123 19 1 7.3320 9.4182 -2.3003 20 6 7.9333 3.5595 -0.3934 21 6 7.5025 2.1175 -0.6714 22 6 3.5705 -0.7213 -1.2484 23 6 2.0405 -0.7213 -1.2490 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9330 0.9288 0.8907 31 1 3.9333 2.4702 0.0002 32 1 2.6406 1.4328 -2.4819 33 1 5.9738 0.1190 -0.4156 34 1 5.9741 0.3024 -2.1861 35 1 6.5555 2.4283 -3.1289 36 1 4.8772 2.7958 -2.6646 37 1 5.6589 4.7475 -1.3578 38 1 6.1847 4.8737 -3.0544 39 1 8.4107 3.9981 -2.4496 40 1 7.6059 7.0792 -4.2975 41 1 7.3145 3.9775 0.4006 42 1 8.9791 3.5740 -0.0864 43 1 7.6092 1.5249 0.2373 44 1 8.1307 1.6956 -1.4557 45 1 3.9346 -1.2354 -2.1379 46 1 3.9335 -1.2350 -0.3582 47 1 1.6772 -1.7490 -1.2486 48 1 1.6775 -0.2076 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334311546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:33 Heat of formation + Delta-G solvation = -79.656680 kcal Electronic energy + Delta-G solvation = -23865.545334 eV Core-core repulsion = 20725.682957 eV Total energy + Delta-G solvation = -3139.862377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03387 -37.77542 -35.43085 -33.74608 -31.98608 -30.95674 -30.62324 -29.56871 -27.69313 -25.40134 -23.44566 -22.80371 -21.92109 -21.38060 -20.38325 -19.43356 -18.42252 -17.18201 -16.27058 -15.28078 -14.97467 -14.55212 -14.35926 -14.32908 -14.23078 -13.97929 -13.52985 -13.02910 -12.75868 -12.45574 -12.34721 -12.28278 -12.22751 -11.85098 -11.72284 -11.52699 -11.32681 -11.19385 -11.03323 -10.89669 -10.67633 -10.61822 -10.52168 -10.34175 -10.07006 -9.91552 -9.83511 -9.51546 -9.21059 -8.84216 -8.49118 -8.18780 -7.57178 -5.88504 -3.93705 3.35090 3.42928 3.47163 4.35797 4.43367 4.51869 4.56559 4.67617 4.69484 5.04225 5.15903 5.27275 5.32700 5.41278 5.41845 5.46571 5.47085 5.63287 5.68115 5.71429 5.80681 5.87541 5.89764 5.95357 5.99955 6.06521 6.07674 6.18939 6.26032 6.30341 6.40666 6.46501 6.59179 6.67444 6.79282 6.93489 7.05203 7.20756 7.31391 7.60676 7.76150 7.81978 7.93993 7.97381 8.17635 8.30495 8.58699 9.10428 9.70042 11.17432 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.003939 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.907759 B = 7107.580924 C = 7433.206541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.133 4.133 5 C 0.144 3.856 6 O -0.546 6.546 7 C 0.067 3.933 8 N -0.527 5.527 9 C 0.050 3.950 10 C -0.102 4.102 11 C 0.047 3.953 12 C -0.509 4.509 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.104 4.104 21 C 0.058 3.942 22 C -0.145 4.145 23 C -0.115 4.115 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.362 0.638 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.012 0.988 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.018 0.982 40 H 0.257 0.743 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 -15.186 5.694 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.157 4.157 4 C -0.171 4.171 5 C 0.103 3.897 6 O -0.353 6.353 7 C -0.062 4.062 8 N -0.252 5.252 9 C -0.077 4.077 10 C -0.140 4.140 11 C 0.028 3.972 12 C -0.547 4.547 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.142 4.142 21 C -0.070 4.070 22 C -0.183 4.183 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.211 0.789 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.922 -14.806 5.772 19.866 hybrid contribution 0.179 0.423 -0.384 0.598 sum -11.743 -14.383 5.388 19.334 Atomic orbital electron populations 1.21838 0.95480 1.01374 1.01800 1.21206 0.95180 0.96647 0.98340 1.21664 0.96452 0.95547 1.02046 1.22033 0.94053 1.03592 0.97388 1.21154 0.93593 0.89484 0.85483 1.86665 1.25729 1.78909 1.43981 1.22032 0.92494 0.91702 0.99994 1.61990 1.19023 1.10718 1.33424 1.22570 1.01449 0.95874 0.87776 1.21625 0.98079 0.91643 1.02651 1.18698 0.93174 0.93893 0.91429 1.21264 1.43871 0.93365 0.96187 0.92841 1.24971 0.95377 0.98565 0.95153 1.69907 1.47931 1.33602 1.01588 0.86606 0.77999 0.85534 0.78246 1.19887 1.21221 1.21122 1.21652 0.98733 0.92850 1.00976 1.22133 0.87958 0.99024 0.97849 1.22197 0.95902 0.97787 1.02447 1.21579 0.95323 1.00429 0.97904 0.92696 0.92990 0.92762 0.91317 0.91857 0.92036 0.91925 0.88987 0.78938 0.90761 0.94833 0.96947 0.89162 0.94223 0.89307 0.96377 0.93262 0.92628 0.93480 0.92827 0.96128 0.91509 0.91301 0.91971 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.10 -0.82 2.72 -90.62 -0.25 -1.06 16 3 C -0.12 -1.21 4.95 -26.73 -0.13 -1.34 16 4 C -0.13 -1.65 4.72 -26.73 -0.13 -1.78 16 5 C 0.14 1.82 0.85 -90.62 -0.08 1.75 16 6 O -0.55 -7.67 9.84 -35.23 -0.35 -8.01 16 7 C 0.07 1.00 4.34 -3.82 -0.02 0.98 16 8 N -0.53 -9.61 3.58 -234.67 -0.84 -10.45 16 9 C 0.05 1.05 5.19 -3.84 -0.02 1.03 16 10 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 11 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 12 C -0.51 -14.38 8.56 -34.44 -0.29 -14.68 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 15 N -0.89 -26.11 11.37 55.43 0.63 -25.48 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.10 -2.27 5.32 -26.65 -0.14 -2.41 16 21 C 0.06 1.09 5.43 -3.83 -0.02 1.07 16 22 C -0.15 -1.47 4.95 -26.73 -0.13 -1.60 16 23 C -0.11 -0.99 4.95 -26.73 -0.13 -1.12 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.62 6.78 -51.93 -0.35 0.27 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.44 7.45 -51.93 -0.39 1.05 16 32 H 0.36 4.01 5.69 45.56 0.26 4.27 16 33 H 0.07 0.98 7.83 -51.93 -0.41 0.58 16 34 H 0.03 0.53 8.02 -51.93 -0.42 0.12 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 1.84 5.07 -51.93 -0.26 1.58 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.87 7.94 -51.93 -0.41 0.46 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.53 6.78 -51.93 -0.35 0.18 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -29.35 349.34 -10.27 -39.63 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.53 Total: 2.28 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -1.43 Total: -19.97 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.21 Total: -35.94 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.35 Total: -8.01 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.35 -10.27 -39.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334311546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.030 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds