Wall clock time and date at job start Tue Mar 31 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46821 * 2 1 4 4 C 1.53001 * 109.46821 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46847 * 60.00176 * 4 3 2 6 6 O 1.42901 * 109.47122 * 59.99904 * 5 4 3 7 7 C 1.53002 * 109.46798 * 179.97438 * 5 4 3 8 8 N 1.46901 * 109.47476 * 305.92981 * 7 5 4 9 9 C 1.46850 * 110.99875 * 285.95456 * 8 7 5 10 10 C 1.53032 * 109.52110 * 174.16071 * 9 8 7 11 11 C 1.53119 * 109.27994 * 59.18070 * 10 9 8 12 12 C 1.50701 * 109.52264 * 182.44135 * 11 10 9 13 13 H 1.07992 * 120.00555 * 119.68027 * 12 11 10 14 14 C 1.37882 * 119.99762 * 299.67950 * 12 11 10 15 15 N 1.31517 * 120.00101 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99870 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47309 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47203 * 120.00100 * 16 14 12 19 19 H 1.48501 * 109.47471 * 239.99834 * 16 14 12 20 20 C 1.53113 * 109.15904 * 302.34148 * 11 10 9 21 21 C 1.46845 * 110.99910 * 161.74713 * 8 7 5 22 22 C 1.52996 * 109.47350 * 299.99698 * 5 4 3 23 23 C 1.53001 * 109.46899 * 60.00333 * 22 5 4 24 24 H 1.08996 * 109.47138 * 59.99842 * 1 2 3 25 25 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47019 * 299.99611 * 1 2 3 27 27 H 1.08996 * 109.47138 * 120.00158 * 2 1 3 28 28 H 1.08998 * 109.47006 * 60.00380 * 3 2 1 29 29 H 1.08996 * 109.47394 * 300.00002 * 3 2 1 30 30 H 1.08993 * 109.47479 * 300.00554 * 4 3 2 31 31 H 1.08998 * 109.47132 * 179.97438 * 4 3 2 32 32 H 0.96695 * 114.00263 * 299.99967 * 6 5 4 33 33 H 1.09002 * 109.47021 * 65.93032 * 7 5 4 34 34 H 1.09003 * 109.47010 * 185.92713 * 7 5 4 35 35 H 1.09001 * 109.46138 * 294.17790 * 9 8 7 36 36 H 1.08994 * 109.46267 * 54.13972 * 9 8 7 37 37 H 1.08998 * 109.50143 * 299.23297 * 10 9 8 38 38 H 1.09006 * 109.49717 * 179.11830 * 10 9 8 39 39 H 1.09003 * 109.52182 * 62.25021 * 11 10 9 40 40 H 0.97000 * 120.00125 * 179.97438 * 15 14 12 41 41 H 1.08996 * 109.50816 * 297.71779 * 20 11 10 42 42 H 1.09006 * 109.50206 * 177.59574 * 20 11 10 43 43 H 1.09002 * 109.46019 * 305.85343 * 21 8 7 44 44 H 1.08991 * 109.46771 * 65.82069 * 21 8 7 45 45 H 1.08998 * 109.47090 * 180.02562 * 22 5 4 46 46 H 1.09003 * 109.46892 * 300.00159 * 22 5 4 47 47 H 1.08998 * 109.47132 * 180.02562 * 23 22 5 48 48 H 1.08996 * 109.47138 * 59.99992 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0804 0.7212 -1.2483 6 8 3.6045 1.3947 -2.4154 7 6 5.6105 0.7217 -1.2480 8 7 6.0997 2.0995 -1.1052 9 6 5.9198 2.8537 -2.3523 10 6 6.3034 4.3175 -2.1245 11 6 7.7627 4.3924 -1.6668 12 6 8.1286 5.8266 -1.3831 13 1 8.4508 6.1162 -0.3939 14 6 8.0520 6.7690 -2.3867 15 7 7.6601 6.4162 -3.5916 16 14 8.5048 8.5468 -2.0350 17 1 8.9111 8.6821 -0.6132 18 1 9.6320 8.9534 -2.9123 19 1 7.3320 9.4182 -2.3003 20 6 7.9333 3.5595 -0.3934 21 6 7.5025 2.1175 -0.6714 22 6 3.5705 -0.7213 -1.2484 23 6 2.0405 -0.7213 -1.2490 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9330 0.9288 0.8907 31 1 3.9333 2.4702 0.0002 32 1 2.6406 1.4328 -2.4819 33 1 5.9738 0.1190 -0.4156 34 1 5.9741 0.3024 -2.1861 35 1 6.5555 2.4283 -3.1289 36 1 4.8772 2.7958 -2.6646 37 1 5.6589 4.7475 -1.3578 38 1 6.1847 4.8737 -3.0544 39 1 8.4107 3.9981 -2.4496 40 1 7.6059 7.0792 -4.2975 41 1 7.3145 3.9775 0.4006 42 1 8.9791 3.5740 -0.0864 43 1 7.6092 1.5249 0.2373 44 1 8.1307 1.6956 -1.4557 45 1 3.9346 -1.2354 -2.1379 46 1 3.9335 -1.2350 -0.3582 47 1 1.6772 -1.7490 -1.2486 48 1 1.6775 -0.2076 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334311546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:32 Heat of formation + Delta-G solvation = -96.647530 kcal Electronic energy + Delta-G solvation = -23866.282113 eV Core-core repulsion = 20725.682957 eV Total energy + Delta-G solvation = -3140.599156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05460 -39.31838 -36.45645 -35.50393 -33.54465 -32.15169 -31.63206 -31.35181 -28.94531 -27.07312 -24.73108 -23.78712 -23.58604 -22.89950 -21.38642 -20.33143 -20.27870 -18.44027 -18.14566 -16.84290 -16.33835 -16.11101 -15.65374 -15.34368 -15.14266 -14.97851 -14.77843 -14.56994 -14.32557 -14.14052 -13.97536 -13.30576 -13.16057 -13.04045 -12.87059 -12.84117 -12.75189 -12.51634 -12.40882 -12.26553 -12.11411 -11.95326 -11.92119 -11.79051 -11.44732 -11.32186 -11.27403 -10.93629 -10.76536 -10.59014 -10.42895 -10.18898 -9.09756 -8.06689 -6.20834 1.39701 1.40895 1.53005 2.44048 3.06826 3.19643 3.40561 3.75885 3.86343 3.92136 4.08296 4.22058 4.33563 4.35425 4.40616 4.43411 4.55373 4.61343 4.63958 4.67990 4.74248 4.77153 4.81473 4.89094 4.93505 4.98103 5.04889 5.07860 5.13945 5.18182 5.24924 5.25218 5.28738 5.33793 5.36329 5.44425 5.47746 5.61407 5.62750 5.67115 5.71792 6.01649 6.06112 6.36045 6.41348 6.42149 6.91624 6.96540 7.46836 8.98001 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.003939 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.907759 B = 7107.580924 C = 7433.206541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.127 4.127 5 C 0.144 3.856 6 O -0.568 6.568 7 C 0.062 3.938 8 N -0.526 5.526 9 C 0.067 3.933 10 C -0.090 4.090 11 C 0.043 3.957 12 C -0.532 4.532 13 H 0.051 0.949 14 C 0.010 3.990 15 N -0.919 5.919 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.097 4.097 21 C 0.062 3.938 22 C -0.137 4.137 23 C -0.111 4.111 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.375 0.625 33 H 0.100 0.900 34 H 0.024 0.976 35 H -0.008 1.008 36 H 0.099 0.901 37 H 0.027 0.973 38 H 0.054 0.946 39 H -0.018 1.018 40 H 0.259 0.741 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.014 0.986 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 -16.592 7.120 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.153 4.153 4 C -0.165 4.165 5 C 0.104 3.896 6 O -0.377 6.377 7 C -0.065 4.065 8 N -0.250 5.250 9 C -0.060 4.060 10 C -0.129 4.129 11 C 0.025 3.975 12 C -0.570 4.570 13 H 0.069 0.931 14 C -0.189 4.189 15 N -0.559 5.559 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.135 4.135 21 C -0.066 4.066 22 C -0.176 4.176 23 C -0.149 4.149 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.225 0.775 33 H 0.118 0.882 34 H 0.043 0.957 35 H 0.011 0.989 36 H 0.116 0.884 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.000 1.000 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.032 0.968 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.996 -16.229 7.210 22.006 hybrid contribution 0.519 0.858 -0.838 1.307 sum -12.476 -15.371 6.373 20.798 Atomic orbital electron populations 1.21814 0.94526 1.02073 1.01892 1.21148 0.95897 0.95202 0.98491 1.21627 0.94730 0.96984 1.01995 1.21929 0.95684 1.01379 0.97541 1.21179 0.92084 0.91262 0.85097 1.86581 1.27059 1.79420 1.44676 1.22234 0.94214 0.89527 1.00571 1.61949 1.18794 1.12874 1.31432 1.22273 1.01319 0.93759 0.88660 1.21376 0.97347 0.93859 1.00276 1.18671 0.92838 0.93653 0.92378 1.21627 1.44291 0.94888 0.96239 0.93051 1.25791 0.95208 1.02935 0.94923 1.70057 1.48445 1.34976 1.02398 0.85548 0.77808 0.80160 0.78383 1.19078 1.20660 1.20562 1.21513 0.99186 0.94298 0.98494 1.22104 0.88024 0.97184 0.99265 1.22117 0.97000 0.95501 1.02947 1.21571 0.94054 1.01358 0.97901 0.92690 0.91983 0.92670 0.90955 0.91781 0.92297 0.91185 0.92547 0.77464 0.88219 0.95745 0.98935 0.88359 0.95402 0.92745 1.00030 0.93176 0.92934 0.92977 0.89148 0.96812 0.91730 0.90066 0.90458 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.19 71.98 0.66 -1.13 16 2 C -0.09 -1.27 2.72 -10.79 -0.03 -1.30 16 3 C -0.12 -2.14 4.95 30.60 0.15 -1.99 16 4 C -0.13 -2.99 4.72 30.60 0.14 -2.84 16 5 C 0.14 3.43 0.85 -10.79 -0.01 3.42 16 6 O -0.57 -15.52 9.84 -148.98 -1.47 -16.99 16 7 C 0.06 1.77 4.34 86.30 0.37 2.14 16 8 N -0.53 -18.95 3.58 -896.36 -3.21 -22.15 16 9 C 0.07 2.91 5.19 86.32 0.45 3.36 16 10 C -0.09 -4.65 5.12 30.64 0.16 -4.50 16 11 C 0.04 2.31 2.16 -11.46 -0.02 2.29 16 12 C -0.53 -30.91 8.56 25.60 0.22 -30.69 16 13 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 14 C 0.01 0.55 5.31 84.66 0.45 1.00 16 15 N -0.92 -55.60 11.37 21.45 0.24 -55.36 16 16 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 C -0.10 -4.25 5.32 30.65 0.16 -4.08 16 21 C 0.06 2.26 5.43 86.33 0.47 2.73 16 22 C -0.14 -2.41 4.95 30.59 0.15 -2.25 16 23 C -0.11 -1.58 4.95 30.60 0.15 -1.43 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.11 6.78 -2.39 -0.02 1.10 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.74 7.45 -2.39 -0.02 1.72 16 32 H 0.37 7.92 5.69 -74.06 -0.42 7.50 16 33 H 0.10 2.33 7.83 -2.39 -0.02 2.31 16 34 H 0.02 0.75 8.02 -2.39 -0.02 0.73 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.10 4.10 5.07 -2.39 -0.01 4.09 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 3.16 6.18 -2.38 -0.01 3.15 16 39 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 40 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.09 2.67 7.94 -2.39 -0.02 2.66 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 0.91 6.78 -2.39 -0.02 0.89 16 Total: -1.00 -65.18 349.34 1.55 -63.63 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.48 Total: 18.84 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 3.48 Total: -35.29 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -2.96 Total: -77.51 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -1.47 Total: -16.99 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.18 1.55 -63.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334311546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.017 kcal (2) G-P(sol) polarization free energy of solvation -65.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds