Wall clock time and date at job start Tue Mar 31 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00467 * 2 1 4 4 O 1.21586 * 120.00317 * 162.32097 * 3 2 1 5 5 N 1.34780 * 119.99611 * 342.59253 * 3 2 1 6 6 C 1.46961 * 120.59468 * 345.31207 * 5 3 2 7 7 C 1.53814 * 108.39937 * 124.76175 * 6 5 3 8 8 N 1.46960 * 108.57801 * 49.63699 * 7 6 5 9 9 C 1.36933 * 120.59579 * 124.63067 * 8 7 6 10 10 H 1.07996 * 120.00369 * 211.25956 * 9 8 7 11 11 C 1.38818 * 120.00139 * 31.25089 * 9 8 7 12 12 N 1.31617 * 119.99610 * 10.13699 * 11 9 8 13 13 Si 1.86797 * 120.00168 * 190.14014 * 11 9 8 14 14 H 1.48497 * 109.47481 * 59.99680 * 13 11 9 15 15 H 1.48499 * 109.47040 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46986 * 299.99929 * 13 11 9 17 17 C 1.46965 * 118.81544 * 304.64632 * 8 7 6 18 18 C 1.46968 * 120.59484 * 165.59589 * 5 3 2 19 19 C 1.46506 * 119.99531 * 179.97438 * 2 1 3 20 20 C 1.54265 * 110.02921 * 57.16863 * 19 2 1 21 21 C 1.54894 * 104.19462 * 217.09915 * 20 19 2 22 22 C 1.54894 * 102.74412 * 37.94468 * 21 20 19 23 23 C 1.53869 * 110.03381 * 300.00219 * 19 2 1 24 24 H 1.08998 * 109.47356 * 96.17837 * 1 2 3 25 25 H 1.08997 * 109.47341 * 216.18754 * 1 2 3 26 26 H 1.09004 * 109.46957 * 336.17916 * 1 2 3 27 27 H 1.09005 * 109.61206 * 244.54071 * 6 5 3 28 28 H 1.08997 * 109.61102 * 5.05429 * 6 5 3 29 29 H 1.08998 * 109.73716 * 289.84899 * 7 6 5 30 30 H 1.08994 * 109.67649 * 169.38789 * 7 6 5 31 31 H 0.97001 * 119.99932 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.61068 * 295.49081 * 17 8 7 33 33 H 1.09000 * 109.75415 * 175.05662 * 17 8 7 34 34 H 1.09000 * 109.60770 * 354.94386 * 18 5 3 35 35 H 1.09001 * 109.61030 * 115.28101 * 18 5 3 36 36 H 1.09003 * 110.01244 * 178.60561 * 19 2 1 37 37 H 1.08994 * 110.48876 * 335.78214 * 20 19 2 38 38 H 1.09008 * 110.48674 * 98.42715 * 20 19 2 39 39 H 1.08995 * 110.75583 * 279.62862 * 21 20 19 40 40 H 1.09003 * 110.75436 * 156.25751 * 21 20 19 41 41 H 1.08999 * 110.48497 * 203.37507 * 22 21 20 42 42 H 1.09004 * 110.48417 * 80.73907 * 22 21 20 43 43 H 1.09004 * 110.02754 * 238.56987 * 23 19 2 44 44 H 1.08998 * 110.03505 * 359.95133 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3117 1.1919 0.3198 5 7 1.5114 2.3076 -0.3492 6 6 0.2107 2.2667 -1.0321 7 6 -0.7914 3.1030 -0.2183 8 7 -0.1844 4.4096 0.0715 9 6 -0.8215 5.5683 -0.2841 10 1 -0.2450 6.4423 -0.5487 11 6 -2.2086 5.6196 -0.3045 12 7 -2.9112 4.6300 0.2046 13 14 -3.0778 7.0931 -1.0546 14 1 -2.6931 7.2205 -2.4832 15 1 -4.5474 6.9059 -0.9520 16 1 -2.6840 8.3247 -0.3242 17 6 1.1189 4.4505 0.7494 18 6 2.1184 3.6143 -0.0595 19 6 2.1974 -1.2688 0.0006 20 6 1.7810 -2.1198 -1.2169 21 6 1.7745 -3.5728 -0.6803 22 6 1.2110 -3.4054 0.7527 23 6 1.8349 -2.0862 1.2528 24 1 -0.3634 -0.1106 -1.0217 25 1 -0.3634 -0.8294 0.6067 26 1 -0.3633 0.9402 0.4151 27 1 0.3103 2.6837 -2.0343 28 1 -0.1371 1.2356 -1.0952 29 1 -1.0238 2.5922 0.7162 30 1 -1.7054 3.2440 -0.7951 31 1 -3.8805 4.6659 0.1907 32 1 1.0226 4.0356 1.7527 33 1 1.4697 5.4806 0.8116 34 1 3.0308 3.4734 0.5200 35 1 2.3536 4.1237 -0.9940 36 1 3.2707 -1.0800 -0.0244 37 1 0.7862 -1.8350 -1.5591 38 1 2.5075 -2.0141 -2.0227 39 1 2.7856 -3.9790 -0.6528 40 1 1.1198 -4.2037 -1.2816 41 1 1.5213 -4.2377 1.3843 42 1 0.1239 -3.3282 0.7286 43 1 2.7324 -2.2948 1.8352 44 1 1.1147 -1.5385 1.8606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335667343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:34 Heat of formation + Delta-G solvation = 38.162831 kcal Electronic energy + Delta-G solvation = -23665.693348 eV Core-core repulsion = 20427.399665 eV Total energy + Delta-G solvation = -3238.293683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47118 -38.16050 -36.67657 -34.77333 -33.57889 -31.20843 -30.31685 -28.81508 -28.04795 -27.50728 -25.68883 -23.38034 -22.77644 -21.13606 -20.77451 -19.55026 -18.87047 -17.28229 -16.63075 -16.20758 -15.65596 -15.20917 -14.81000 -14.74599 -14.40242 -13.76541 -13.61245 -13.51354 -13.41027 -13.07042 -12.92535 -12.29101 -11.94213 -11.87028 -11.54813 -11.42099 -11.22795 -11.19904 -10.93479 -10.79310 -10.73740 -10.65386 -10.50577 -10.47622 -10.20868 -9.91658 -9.84543 -9.38855 -8.61623 -8.44278 -8.00101 -6.63897 -5.84955 -3.34511 2.96561 3.34202 3.39571 3.40823 3.49286 4.13749 4.43509 4.53355 4.54670 4.80549 5.13741 5.31033 5.33878 5.38131 5.38646 5.44142 5.45232 5.51114 5.58043 5.71683 5.76275 5.84643 5.88095 5.93248 5.97803 6.01651 6.14159 6.15328 6.20544 6.24027 6.30378 6.38900 6.50850 6.71340 6.86900 7.02481 7.20808 7.43513 7.52056 7.71229 8.33743 8.39145 8.96894 9.13852 9.74334 10.32880 11.21850 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.004365 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.435691 B = 6413.533062 C = 6963.558977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.631 5.631 3 C 0.708 3.292 4 O -0.604 6.604 5 N -0.613 5.613 6 C 0.034 3.966 7 C 0.158 3.842 8 N -0.591 5.591 9 C -0.254 4.254 10 H 0.065 0.935 11 C 0.005 3.995 12 N -0.907 5.907 13 Si 0.907 3.093 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.131 3.869 18 C 0.115 3.885 19 C 0.157 3.843 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.136 4.136 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.022 0.978 30 H 0.102 0.898 31 H 0.255 0.745 32 H 0.021 0.979 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -14.531 -1.654 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.369 5.369 3 C 0.412 3.588 4 O -0.483 6.483 5 N -0.348 5.348 6 C -0.089 4.089 7 C 0.031 3.969 8 N -0.314 5.314 9 C -0.383 4.383 10 H 0.083 0.917 11 C -0.194 4.194 12 N -0.552 5.552 13 Si 0.737 3.263 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.208 1.208 17 C 0.003 3.997 18 C -0.010 4.010 19 C 0.052 3.948 20 C -0.176 4.176 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.175 4.175 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.040 0.960 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.973 -14.457 -1.458 15.710 hybrid contribution -0.710 0.837 -0.413 1.172 sum 5.264 -13.620 -1.870 14.721 Atomic orbital electron populations 1.22300 0.80277 1.04245 1.00508 1.47000 1.06070 1.04505 1.79292 1.15953 0.84444 0.80338 0.78113 1.90817 1.15471 1.85408 1.56652 1.47212 1.22408 1.04503 1.60715 1.23889 0.84305 1.04050 0.96691 1.21320 0.94712 0.84427 0.96416 1.43903 1.18654 1.02311 1.66497 1.19181 0.88932 0.90859 1.39339 0.91689 1.25158 0.96944 0.97804 0.99469 1.69918 1.05648 1.32323 1.47274 0.86299 0.78439 0.82374 0.79194 1.20943 1.21558 1.20833 1.21343 0.87095 0.97662 0.93550 1.22062 0.96638 0.82240 1.00065 1.21532 0.97456 0.81929 0.93834 1.22781 1.02264 0.94785 0.97762 1.22449 1.01090 0.96287 0.96189 1.22356 1.00266 0.97201 0.96288 1.22536 1.01342 0.95813 0.97775 0.92276 0.91979 0.88559 0.92676 0.87358 0.96010 0.88020 0.93444 0.96055 0.91598 0.90363 0.92324 0.88402 0.90881 0.91423 0.91421 0.91500 0.91731 0.91590 0.91282 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 7.30 59.85 0.44 1.35 16 2 N -0.63 -9.60 2.73 -207.41 -0.57 -10.16 16 3 C 0.71 13.47 7.90 -86.92 -0.69 12.78 16 4 O -0.60 -13.11 15.38 5.29 0.08 -13.03 16 5 N -0.61 -11.79 2.87 -177.94 -0.51 -12.30 16 6 C 0.03 0.62 5.60 -3.37 -0.02 0.61 16 7 C 0.16 3.54 5.11 -3.37 -0.02 3.52 16 8 N -0.59 -14.48 2.96 -171.77 -0.51 -14.99 16 9 C -0.25 -6.76 9.59 -15.06 -0.14 -6.90 16 10 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 11 C 0.00 0.12 5.07 -17.43 -0.09 0.04 16 12 N -0.91 -25.13 10.97 55.49 0.61 -24.52 16 13 Si 0.91 21.07 29.57 -169.99 -5.03 16.04 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.13 2.79 6.67 -3.60 -0.02 2.77 16 18 C 0.11 2.23 6.55 -3.59 -0.02 2.21 16 19 C 0.16 2.02 3.27 -66.81 -0.22 1.80 16 20 C -0.14 -1.42 6.42 -25.07 -0.16 -1.59 16 21 C -0.12 -1.03 6.91 -24.73 -0.17 -1.20 16 22 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 23 C -0.14 -1.50 6.04 -25.62 -0.15 -1.65 16 24 H 0.06 0.70 6.18 -51.93 -0.32 0.38 16 25 H 0.06 0.70 6.84 -51.93 -0.36 0.35 16 26 H 0.10 1.52 4.10 -51.93 -0.21 1.30 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.11 1.70 2.68 -86.00 -0.23 1.47 16 29 H 0.02 0.51 6.83 -51.93 -0.35 0.16 16 30 H 0.10 2.52 5.97 -51.93 -0.31 2.21 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 34 H 0.08 1.50 7.12 -51.93 -0.37 1.13 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.10 1.45 7.10 -51.93 -0.37 1.08 16 37 H 0.07 0.76 6.69 -51.93 -0.35 0.41 16 38 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.87 6.92 -51.93 -0.36 0.51 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -30.57 326.85 -9.43 -40.00 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.99 Total: 1.54 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -1.44 Total: 12.49 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.98 Total: -61.98 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.57 -9.43 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335667343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.166 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds