Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 C 1.53003 * 109.46905 * 304.15187 * 3 2 1 5 5 C 1.53003 * 109.46804 * 296.18327 * 4 3 2 6 6 C 1.53006 * 109.46728 * 64.14223 * 3 2 1 7 7 H 1.08996 * 109.47157 * 300.00234 * 6 3 2 8 8 C 1.53002 * 109.46728 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.46775 * 60.00671 * 6 3 2 10 10 O 1.21281 * 120.00403 * 19.26715 * 9 6 3 11 11 N 1.34773 * 119.99754 * 199.26644 * 9 6 3 12 12 C 1.46506 * 120.00068 * 2.82653 * 11 9 6 13 13 C 1.50701 * 109.47077 * 84.05646 * 12 11 9 14 14 H 1.07992 * 120.00118 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99712 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00098 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99910 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46997 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46870 * 119.99690 * 17 15 13 20 20 H 1.48497 * 109.47097 * 239.99745 * 17 15 13 21 21 C 1.46503 * 120.00161 * 182.82406 * 11 9 6 22 22 C 1.53000 * 109.47093 * 94.24343 * 21 11 9 23 23 C 1.52996 * 117.49689 * 243.74770 * 22 21 11 24 24 C 1.52996 * 117.49755 * 175.08752 * 22 21 11 25 25 H 1.09003 * 109.47070 * 65.82702 * 1 2 3 26 26 H 1.09007 * 109.46719 * 185.81533 * 1 2 3 27 27 H 1.08995 * 109.47173 * 305.82007 * 1 2 3 28 28 H 1.08998 * 109.47435 * 240.00211 * 2 1 3 29 29 H 1.08998 * 109.46977 * 120.00086 * 2 1 3 30 30 H 1.08990 * 109.47291 * 184.14672 * 3 2 1 31 31 H 1.08999 * 109.47636 * 56.18253 * 4 3 2 32 32 H 1.08999 * 109.47082 * 176.18983 * 4 3 2 33 33 H 1.08997 * 109.47431 * 185.71043 * 5 4 3 34 34 H 1.09002 * 109.47067 * 305.70958 * 5 4 3 35 35 H 1.09005 * 109.46887 * 65.70701 * 5 4 3 36 36 H 1.09001 * 109.46674 * 59.36692 * 8 6 3 37 37 H 1.08995 * 109.47178 * 299.36736 * 8 6 3 38 38 H 1.09000 * 109.46995 * 179.36515 * 8 6 3 39 39 H 1.08996 * 109.46939 * 204.05578 * 12 11 9 40 40 H 1.09000 * 109.46609 * 324.05414 * 12 11 9 41 41 H 0.97006 * 119.99815 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.46992 * 214.24648 * 21 11 9 43 43 H 1.08999 * 109.46784 * 334.24362 * 21 11 9 44 44 H 1.08997 * 115.54869 * 29.41508 * 22 21 11 45 45 H 1.09004 * 117.49892 * 0.02562 * 23 22 21 46 46 H 1.09007 * 117.49935 * 145.02196 * 23 22 21 47 47 H 1.09002 * 117.50074 * 214.97867 * 24 22 21 48 48 H 1.09001 * 117.50256 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4465 2.1932 -1.1938 5 6 1.9464 1.5603 -2.4939 6 6 1.6168 2.1330 1.2982 7 1 0.5294 2.1320 1.3724 8 6 2.1263 3.5757 1.2979 9 6 2.2013 1.3936 2.4740 10 8 3.1458 0.6498 2.3140 11 7 1.6745 1.5588 3.7034 12 6 0.4954 2.4088 3.8869 13 6 -0.7494 1.6104 3.5965 14 1 -0.6701 0.5739 3.3041 15 6 -1.9894 2.2038 3.7031 16 7 -2.0859 3.4663 4.0588 17 14 -3.5323 1.2144 3.3425 18 1 -3.1548 -0.1713 2.9652 19 1 -4.3932 1.1816 4.5520 20 1 -4.2753 1.8467 2.2230 21 6 2.2809 0.8886 4.8564 22 6 3.2719 1.8368 5.5345 23 6 4.7469 1.4305 5.5409 24 6 3.9283 1.3624 6.8325 25 1 -0.3633 0.4208 -0.9376 26 1 -0.3633 -1.0225 0.1041 27 1 -0.3633 0.6014 0.8332 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1274 1.4434 -0.0743 31 1 0.3587 2.1344 -1.1558 32 1 1.7554 3.2379 -1.1561 33 1 1.6065 2.1550 -3.3418 34 1 3.0359 1.5274 -2.4866 35 1 1.5529 0.5473 -2.5796 36 1 1.7121 4.1070 0.4410 37 1 3.2144 3.5768 1.2347 38 1 1.8152 4.0710 2.2176 39 1 0.4640 2.7695 4.9150 40 1 0.5499 3.2577 3.2054 41 1 -2.9583 3.8836 4.1341 42 1 1.5016 0.6095 5.5657 43 1 2.8052 -0.0065 4.5219 44 1 3.0427 2.8986 5.4452 45 1 5.0113 0.4878 5.0616 46 1 5.4882 2.2251 5.4562 47 1 4.1313 2.1122 7.5971 48 1 3.6545 0.3746 7.2032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341561195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -43.509104 kcal Electronic energy + Delta-G solvation = -24145.448905 eV Core-core repulsion = 21007.154004 eV Total energy + Delta-G solvation = -3138.294900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.70381 -37.46765 -36.31041 -34.67082 -32.46090 -31.75021 -30.81814 -27.83571 -26.26609 -25.95457 -23.45151 -23.03113 -22.40993 -22.04287 -20.36078 -18.94030 -17.74454 -16.67659 -16.33097 -15.60090 -15.13596 -14.79169 -14.61026 -14.37661 -14.06838 -13.55614 -13.36925 -13.01895 -12.63256 -12.51552 -12.25566 -12.02292 -11.85679 -11.75145 -11.47684 -11.33628 -11.24433 -11.20092 -11.04469 -10.97604 -10.86334 -10.74199 -10.49724 -10.25369 -10.08177 -9.95952 -9.88356 -9.72996 -9.62312 -9.54388 -8.75932 -8.52255 -7.64046 -6.18087 -4.24763 3.20745 3.30000 3.33890 3.54603 3.91207 4.20233 4.34195 5.07886 5.13415 5.16174 5.18380 5.23978 5.25560 5.34615 5.56846 5.59051 5.73369 5.79085 5.81775 5.85406 5.90668 5.94938 5.99782 6.10567 6.15058 6.17487 6.18967 6.21792 6.27552 6.35714 6.35767 6.37940 6.46920 6.52369 6.56638 6.62949 6.69606 6.79050 6.84939 6.92888 7.06495 7.26288 7.61836 7.78722 8.08522 8.42498 8.82785 9.14902 9.43241 10.88346 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009508 B = 0.008768 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.210080 B = 3192.522247 C = 5279.188525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.118 4.118 3 C -0.064 4.064 4 C -0.126 4.126 5 C -0.149 4.149 6 C -0.110 4.110 7 H 0.116 0.884 8 C -0.140 4.140 9 C 0.529 3.471 10 O -0.574 6.574 11 N -0.595 5.595 12 C 0.233 3.767 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.147 3.853 22 C -0.158 4.158 23 C -0.176 4.176 24 C -0.181 4.181 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.264 0.736 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 -1.319 -4.287 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.156 4.156 3 C -0.083 4.083 4 C -0.163 4.163 5 C -0.206 4.206 6 C -0.131 4.131 7 H 0.134 0.866 8 C -0.198 4.198 9 C 0.317 3.683 10 O -0.455 6.455 11 N -0.324 5.324 12 C 0.114 3.886 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.024 3.976 22 C -0.178 4.178 23 C -0.213 4.213 24 C -0.219 4.219 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.698 -1.549 -4.317 8.961 hybrid contribution -1.096 -0.337 0.021 1.147 sum 6.602 -1.886 -4.295 8.099 Atomic orbital electron populations 1.21971 0.96149 1.01381 1.02386 1.21557 0.95760 0.96363 1.01893 1.20943 1.00087 0.94616 0.92618 1.21713 1.01221 0.99333 0.94026 1.21780 1.00878 1.00793 0.97185 1.21393 1.03936 0.95144 0.92598 0.86644 1.21787 1.00401 0.94930 1.02668 1.20428 0.82304 0.81267 0.84255 1.90543 1.29809 1.39847 1.85342 1.48174 1.30212 1.48358 1.05679 1.19513 0.80930 0.89928 0.98278 1.21540 0.90597 0.97985 1.47145 0.92010 1.24913 0.98986 0.94881 0.94874 1.69932 1.24691 1.11089 1.47112 0.86557 0.83084 0.80529 0.78099 1.19534 1.20916 1.20784 1.20827 0.94838 0.94042 0.87932 1.22800 0.94316 1.00842 0.99811 1.22964 0.94367 1.03001 1.00998 1.22907 1.05205 1.02547 0.91193 0.93170 0.93767 0.90763 0.92927 0.91086 0.91135 0.91391 0.91938 0.93386 0.93079 0.92720 0.91828 0.93213 0.91693 0.94746 0.93970 0.92638 0.90489 0.90712 0.87901 0.88808 0.89583 0.89209 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.12 37.16 0.34 -2.36 16 2 C -0.12 -1.97 5.09 -26.73 -0.14 -2.11 16 3 C -0.06 -1.04 1.39 -90.61 -0.13 -1.16 16 4 C -0.13 -1.74 4.83 -26.73 -0.13 -1.87 16 5 C -0.15 -1.78 9.49 37.16 0.35 -1.43 16 6 C -0.11 -2.02 1.22 -91.77 -0.11 -2.13 16 7 H 0.12 2.36 4.80 -51.93 -0.25 2.11 16 8 C -0.14 -2.32 8.61 37.16 0.32 -2.00 16 9 C 0.53 10.90 6.07 -10.99 -0.07 10.83 16 10 O -0.57 -12.71 14.17 5.56 0.08 -12.63 16 11 N -0.59 -12.39 2.47 -175.05 -0.43 -12.83 16 12 C 0.23 5.40 4.83 -5.19 -0.03 5.38 16 13 C -0.53 -13.48 8.49 -34.44 -0.29 -13.77 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -24.00 13.29 55.43 0.74 -23.26 16 17 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.15 2.76 5.73 -4.04 -0.02 2.74 16 22 C -0.16 -2.60 6.01 -90.62 -0.54 -3.15 16 23 C -0.18 -2.57 10.18 -26.70 -0.27 -2.85 16 24 C -0.18 -2.45 10.25 -26.70 -0.27 -2.72 16 25 H 0.05 0.74 6.62 -51.93 -0.34 0.40 16 26 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.07 1.43 6.28 -51.93 -0.33 1.10 16 28 H 0.05 0.78 6.87 -51.93 -0.36 0.43 16 29 H 0.07 1.37 6.15 -51.93 -0.32 1.05 16 30 H 0.07 1.20 7.90 -51.93 -0.41 0.79 16 31 H 0.07 0.97 6.27 -51.93 -0.33 0.65 16 32 H 0.06 0.82 6.22 -51.93 -0.32 0.50 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.65 6.92 -51.93 -0.36 0.29 16 36 H 0.06 0.93 6.31 -51.93 -0.33 0.60 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.14 6.33 -51.93 -0.33 0.81 16 39 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 40 H 0.04 1.00 5.00 -51.93 -0.26 0.74 16 41 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 43 H 0.07 1.43 7.00 -51.93 -0.36 1.06 16 44 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 45 H 0.09 1.41 8.03 -51.93 -0.42 1.00 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -26.99 365.66 -8.69 -35.68 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -8.47 Total: 7.24 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.09 Total: -14.97 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.30 Total: -36.09 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -26.99 -8.69 -35.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341561195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.830 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds