Wall clock time and date at job start Tue Mar 31 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48494 * 109.47257 * 270.00049 * 3 2 1 5 5 H 1.48502 * 109.47099 * 30.00468 * 3 2 1 6 6 H 1.48500 * 109.46819 * 149.99865 * 3 2 1 7 7 C 1.37877 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00323 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47228 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47277 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47384 * 179.97438 * 11 10 9 13 13 C 1.46901 * 111.00211 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46913 * 155.00230 * 13 12 11 15 15 C 1.53010 * 109.45665 * 180.02562 * 14 13 12 16 16 C 1.52927 * 109.49217 * 300.07058 * 15 14 13 17 17 C 1.53109 * 109.50989 * 299.65661 * 16 15 14 18 18 C 1.53111 * 109.15362 * 297.08107 * 17 16 15 19 19 O 1.42900 * 109.41218 * 302.47715 * 18 17 16 20 20 C 1.42909 * 114.12961 * 61.15287 * 19 18 17 21 21 C 1.53108 * 109.39760 * 298.82853 * 20 19 18 22 22 C 1.52926 * 109.60384 * 59.85699 * 16 15 14 23 23 C 1.53007 * 109.47460 * 275.00141 * 13 12 11 24 24 H 0.97006 * 119.99695 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46856 * 59.99710 * 9 7 2 26 26 H 1.09000 * 109.46985 * 300.00135 * 9 7 2 27 27 H 1.08999 * 109.47331 * 59.99227 * 10 9 7 28 28 H 1.08998 * 109.46630 * 300.00185 * 10 9 7 29 29 H 1.09002 * 109.47173 * 59.99805 * 11 10 9 30 30 H 1.09000 * 109.47024 * 299.99924 * 11 10 9 31 31 H 1.00895 * 111.00041 * 303.95425 * 12 11 10 32 32 H 1.09003 * 109.46755 * 35.00073 * 13 12 11 33 33 H 1.09002 * 109.47501 * 60.06062 * 14 13 12 34 34 H 1.09001 * 109.47379 * 300.05705 * 14 13 12 35 35 H 1.09000 * 109.46336 * 60.07508 * 15 14 13 36 36 H 1.08997 * 109.46762 * 180.02562 * 15 14 13 37 37 H 1.09003 * 109.52745 * 56.98654 * 17 16 15 38 38 H 1.09005 * 109.52890 * 177.17685 * 17 16 15 39 39 H 1.09002 * 109.47789 * 182.49823 * 18 17 16 40 40 H 1.08999 * 109.47858 * 62.46131 * 18 17 16 41 41 H 1.09001 * 109.48391 * 178.85846 * 20 19 18 42 42 H 1.08997 * 109.48579 * 58.80806 * 20 19 18 43 43 H 1.08998 * 109.52520 * 297.65935 * 21 20 19 44 44 H 1.09003 * 109.52833 * 177.46048 * 21 20 19 45 45 H 1.08996 * 109.46715 * 60.17710 * 22 16 15 46 46 H 1.09000 * 109.46756 * 180.16266 * 22 16 15 47 47 H 1.08999 * 109.46887 * 59.96843 * 23 13 12 48 48 H 1.08993 * 109.47043 * 299.96384 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 7 2.4348 -6.1037 -0.0024 13 6 1.7344 -7.3950 -0.0023 14 6 2.6404 -8.4665 -0.6122 15 6 1.9105 -9.8113 -0.6126 16 6 1.5551 -10.1994 0.8233 17 6 2.8367 -10.3235 1.6516 18 6 3.6985 -11.4515 1.0778 19 8 2.9497 -12.6686 1.0784 20 6 1.7647 -12.6259 0.2807 21 6 0.8252 -11.5455 0.8230 22 6 0.6518 -9.1281 1.4357 23 6 1.3811 -7.7836 1.4348 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 2.8713 -3.6048 0.8890 28 1 2.8725 -3.6039 -0.8909 29 1 0.8539 -5.0447 -0.8923 30 1 0.8532 -5.0450 0.8877 31 1 3.0696 -6.0364 -0.7836 32 1 0.8211 -7.3130 -0.5915 33 1 3.5534 -8.5493 -0.0224 34 1 2.8930 -8.1893 -1.6357 35 1 0.9980 -9.7291 -1.2031 36 1 2.5559 -10.5749 -1.0467 37 1 3.3899 -9.3852 1.6098 38 1 2.5811 -10.5508 2.6866 39 1 4.5918 -11.5740 1.6902 40 1 3.9887 -11.2037 0.0567 41 1 1.2656 -13.5942 0.3190 42 1 2.0291 -12.3934 -0.7509 43 1 0.5276 -11.7987 1.8405 44 1 -0.0593 -11.4802 0.1893 45 1 -0.2629 -9.0452 0.8487 46 1 0.4022 -9.4054 2.4598 47 1 0.7362 -7.0200 1.8695 48 1 2.2945 -7.8663 2.0238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344268482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:06 Heat of formation + Delta-G solvation = -86.582486 kcal Electronic energy + Delta-G solvation = -22721.083664 eV Core-core repulsion = 19580.920961 eV Total energy + Delta-G solvation = -3140.162702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88755 -38.03067 -35.82198 -33.71136 -32.19410 -31.37074 -31.07216 -30.15450 -27.16312 -25.55111 -23.91467 -23.69470 -22.43703 -22.11263 -20.40475 -19.96970 -18.42761 -16.67695 -16.30464 -16.24933 -15.76838 -15.19376 -14.88006 -14.72056 -14.58342 -14.43621 -14.30734 -13.67564 -13.29407 -12.99910 -12.55119 -12.33868 -12.27136 -12.18680 -11.92230 -11.67726 -11.58133 -11.52508 -11.31290 -11.13643 -10.86652 -10.64549 -10.60136 -10.43695 -10.38703 -10.24597 -10.13396 -9.66538 -9.55119 -9.29325 -9.02806 -8.32895 -8.13205 -5.98040 -4.00040 3.33140 3.39154 3.43101 3.62318 4.16432 4.33177 4.44102 4.47957 4.56763 4.73750 4.83385 4.88842 4.93168 5.04671 5.13288 5.17432 5.32456 5.37720 5.39841 5.40880 5.43928 5.46862 5.53105 5.59025 5.67032 5.69132 5.80540 5.85534 5.89156 5.91729 5.97260 6.04109 6.08433 6.19127 6.27334 6.34807 6.43673 6.74875 6.82042 6.93498 7.16238 7.40671 7.67831 7.70931 7.85979 8.02637 8.46016 9.07272 9.63846 11.13454 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.049371 B = 0.002532 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.998844 B =11056.175167 C =11231.952249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.689 5.689 13 C 0.088 3.912 14 C -0.122 4.122 15 C -0.110 4.110 16 C -0.056 4.056 17 C -0.148 4.148 18 C 0.058 3.942 19 O -0.385 6.385 20 C 0.059 3.941 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.108 4.108 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.337 0.663 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -25.980 0.262 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.320 5.320 13 C -0.022 4.022 14 C -0.160 4.160 15 C -0.148 4.148 16 C -0.056 4.056 17 C -0.186 4.186 18 C -0.018 4.018 19 O -0.304 6.304 20 C -0.017 4.017 21 C -0.183 4.183 22 C -0.144 4.144 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.241 -26.004 1.051 26.226 hybrid contribution -0.132 1.281 -1.103 1.695 sum 3.109 -24.723 -0.052 24.918 Atomic orbital electron populations 1.69971 1.06069 1.26534 1.51088 1.25036 0.94853 0.99271 0.95411 0.86593 0.79879 0.83475 0.78061 1.20709 1.21234 1.19850 1.21265 0.93053 0.91075 1.50260 0.92682 1.19065 0.94027 0.91417 0.97055 1.21617 0.99148 0.93056 1.00640 1.22152 0.94115 0.90847 0.99722 1.60566 1.20402 1.01274 1.49729 1.21487 0.95458 0.89143 0.96084 1.21756 0.99259 0.94344 1.00597 1.21647 1.00502 0.96867 0.95773 1.20512 0.95317 0.94404 0.95406 1.22336 0.96640 0.99732 0.99863 1.22639 0.94151 0.84469 1.00551 1.87913 1.37112 1.34980 1.70421 1.22599 0.85888 0.99255 0.94002 1.22249 0.98738 0.94907 1.02444 1.21562 0.97937 0.94385 1.00564 1.21535 1.00738 0.95695 0.96638 0.93053 0.96880 0.96621 0.92606 0.93741 0.95957 0.91579 0.84551 0.94314 0.90850 0.92192 0.91872 0.91827 0.89713 0.91199 0.89113 0.93014 0.89230 0.93077 0.91039 0.90946 0.92065 0.91875 0.91870 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 11 C 0.06 1.06 5.48 -3.83 -0.02 1.04 16 12 N -0.69 -9.96 6.31 -106.72 -0.67 -10.63 16 13 C 0.09 1.06 2.49 -67.71 -0.17 0.89 16 14 C -0.12 -1.17 4.92 -26.73 -0.13 -1.31 16 15 C -0.11 -0.92 4.17 -26.76 -0.11 -1.03 16 16 C -0.06 -0.47 0.51 -154.46 -0.08 -0.55 16 17 C -0.15 -1.25 4.22 -26.62 -0.11 -1.37 16 18 C 0.06 0.48 6.57 37.21 0.24 0.73 16 19 O -0.39 -3.77 10.76 -35.23 -0.38 -4.15 16 20 C 0.06 0.45 6.57 37.21 0.24 0.70 16 21 C -0.15 -1.10 4.92 -26.61 -0.13 -1.24 16 22 C -0.11 -1.00 4.73 -26.79 -0.13 -1.13 16 23 C -0.11 -1.24 5.15 -26.75 -0.14 -1.37 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 30 H 0.07 1.20 7.44 -51.93 -0.39 0.81 16 31 H 0.34 4.58 8.35 -39.29 -0.33 4.25 16 32 H 0.04 0.50 7.80 -51.93 -0.40 0.10 16 33 H 0.07 0.71 6.38 -51.93 -0.33 0.38 16 34 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.49 5.00 -51.93 -0.26 0.23 16 37 H 0.08 0.75 4.86 -51.93 -0.25 0.50 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.40 6.60 -51.93 -0.34 0.06 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.36 6.60 -51.93 -0.34 0.02 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.82 7.45 -51.93 -0.39 0.43 16 48 H 0.07 0.83 6.52 -51.93 -0.34 0.49 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -30.51 352.85 -10.07 -40.59 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.83 Total: -1.05 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -1.23 Total: -20.36 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.06 Total: -37.27 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.38 Total: -4.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.51 -10.07 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344268482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.996 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds