Wall clock time and date at job start Tue Mar 31 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46780 * 2 1 4 4 C 1.53008 * 109.46849 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46985 * 184.49710 * 4 3 2 6 6 H 1.09007 * 109.47555 * 54.76035 * 5 4 3 7 7 C 1.53004 * 109.47068 * 294.75963 * 5 4 3 8 8 C 1.52998 * 109.47065 * 300.66766 * 7 5 4 9 9 C 1.50700 * 109.47152 * 174.75786 * 5 4 3 10 10 O 1.21284 * 119.99888 * 19.95126 * 9 5 4 11 11 N 1.34779 * 120.00353 * 199.94187 * 9 5 4 12 12 C 1.46499 * 119.99933 * 2.93849 * 11 9 5 13 13 C 1.50705 * 109.47290 * 83.97703 * 12 11 9 14 14 H 1.08003 * 119.99604 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99911 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00335 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99827 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46948 * 90.00030 * 17 15 13 19 19 H 1.48500 * 109.47321 * 210.00026 * 17 15 13 20 20 H 1.48499 * 109.47555 * 330.00317 * 17 15 13 21 21 C 1.46500 * 120.00076 * 182.93114 * 11 9 5 22 22 C 1.53001 * 109.46813 * 94.31628 * 21 11 9 23 23 C 1.52992 * 117.49854 * 243.74526 * 22 21 11 24 24 C 1.52997 * 117.49548 * 175.08612 * 22 21 11 25 25 H 1.09002 * 109.47163 * 300.00258 * 1 2 3 26 26 H 1.09000 * 109.47196 * 59.99667 * 1 2 3 27 27 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47246 * 240.00116 * 2 1 3 29 29 H 1.08998 * 109.47187 * 119.99790 * 2 1 3 30 30 H 1.09002 * 109.47484 * 59.99938 * 3 2 1 31 31 H 1.08998 * 109.47090 * 299.99850 * 3 2 1 32 32 H 1.08999 * 109.47350 * 64.49177 * 4 3 2 33 33 H 1.09004 * 109.46889 * 304.49495 * 4 3 2 34 34 H 1.09004 * 109.46675 * 180.66967 * 7 5 4 35 35 H 1.08995 * 109.47023 * 60.67003 * 7 5 4 36 36 H 1.08998 * 109.47494 * 179.46424 * 8 7 5 37 37 H 1.09003 * 109.46801 * 59.46118 * 8 7 5 38 38 H 1.09000 * 109.47640 * 299.46984 * 8 7 5 39 39 H 1.08991 * 109.47099 * 203.97966 * 12 11 9 40 40 H 1.09006 * 109.46978 * 323.98256 * 12 11 9 41 41 H 0.96994 * 120.00630 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.47036 * 214.31692 * 21 11 9 43 43 H 1.09004 * 109.47077 * 334.31685 * 21 11 9 44 44 H 1.09001 * 115.55011 * 29.42264 * 22 21 11 45 45 H 1.09001 * 117.50263 * 359.97438 * 23 22 21 46 46 H 1.09000 * 117.50170 * 145.02622 * 23 22 21 47 47 H 1.09002 * 117.49700 * 214.97807 * 24 22 21 48 48 H 1.08996 * 117.50058 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8806 0.1125 6 1 3.6424 3.3532 0.9919 7 6 3.6798 3.6636 -1.1397 8 6 4.2803 2.9906 -2.3756 9 6 5.5814 2.8724 0.2414 10 8 6.2150 1.9001 -0.1109 11 7 6.2202 3.9456 0.7481 12 6 5.4511 5.0943 1.2330 13 6 5.0097 4.8406 2.6515 14 1 5.2760 3.9163 3.1427 15 6 4.2662 5.7885 3.3221 16 7 3.9416 6.9137 2.7238 17 14 3.7185 5.4737 5.0800 18 1 4.7518 5.9804 6.0186 19 1 2.4344 6.1757 5.3317 20 1 3.5341 4.0149 5.2875 21 6 7.6836 3.9634 0.8139 22 6 8.2417 4.6570 -0.4304 23 6 9.0970 3.8188 -1.3825 24 6 9.7538 4.8801 -0.4964 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 1.0002 -0.9283 33 1 3.9336 0.8604 0.8461 34 1 4.0534 4.6848 -1.0644 35 1 2.5934 3.6796 -1.2264 36 1 3.9874 3.5429 -3.2684 37 1 3.9142 1.9663 -2.4454 38 1 5.3672 2.9830 -2.2932 39 1 6.0738 5.9882 1.2006 40 1 4.5752 5.2384 0.6003 41 1 3.4188 7.5807 3.1956 42 1 8.0006 4.5054 1.7050 43 1 8.0578 2.9406 0.8584 44 1 7.6005 5.4210 -0.8701 45 1 9.2626 2.7734 -1.1223 46 1 9.0190 4.0316 -2.4487 47 1 10.1076 5.7907 -0.9799 48 1 10.3511 4.5325 0.3465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344401973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:13 Heat of formation + Delta-G solvation = -51.007462 kcal Electronic energy + Delta-G solvation = -23560.963906 eV Core-core repulsion = 20422.343852 eV Total energy + Delta-G solvation = -3138.620054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.56534 -37.22545 -35.99445 -34.65819 -33.66430 -32.45730 -29.72442 -28.14521 -26.97856 -25.48754 -23.24520 -22.99280 -22.09155 -21.59018 -20.54723 -19.61972 -17.76623 -16.65384 -16.21576 -15.61651 -15.47959 -14.79922 -14.66056 -14.39913 -14.11556 -13.81104 -13.56274 -12.79811 -12.75896 -12.63920 -12.37423 -12.21827 -11.98739 -11.93110 -11.42349 -11.25387 -11.22928 -11.14846 -11.12948 -10.90015 -10.80068 -10.60305 -10.58658 -10.44167 -10.20823 -10.08749 -10.06065 -9.88365 -9.67275 -9.54893 -8.77717 -8.52056 -7.64574 -6.17770 -4.24858 3.22415 3.29833 3.33138 3.54319 3.91271 4.20305 4.34470 5.00979 5.09596 5.11160 5.14632 5.20771 5.25667 5.33268 5.38030 5.44868 5.51599 5.68878 5.76838 5.81954 5.82662 5.85562 5.94201 6.00720 6.05072 6.11608 6.15056 6.20349 6.21687 6.25890 6.29484 6.36287 6.36825 6.39515 6.53166 6.56647 6.59602 6.65828 6.78161 6.85637 6.93215 7.25403 7.61467 7.78729 8.08541 8.42356 8.82340 9.14592 9.43272 10.88644 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009166 B = 0.007509 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.903225 B = 3728.108743 C = 6045.676678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.098 4.098 5 C -0.108 4.108 6 H 0.112 0.888 7 C -0.111 4.111 8 C -0.152 4.152 9 C 0.528 3.472 10 O -0.575 6.575 11 N -0.595 5.595 12 C 0.235 3.765 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.147 3.853 22 C -0.158 4.158 23 C -0.176 4.176 24 C -0.181 4.181 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.265 0.735 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -6.294 -7.231 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.136 4.136 5 C -0.129 4.129 6 H 0.130 0.870 7 C -0.148 4.148 8 C -0.210 4.210 9 C 0.317 3.683 10 O -0.457 6.457 11 N -0.324 5.324 12 C 0.115 3.885 13 C -0.575 4.575 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.024 3.976 22 C -0.177 4.177 23 C -0.213 4.213 24 C -0.219 4.219 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.050 -6.593 -7.366 9.886 hybrid contribution -0.319 0.212 1.116 1.180 sum -0.269 -6.381 -6.251 8.936 Atomic orbital electron populations 1.21778 0.96313 1.01055 1.01766 1.21521 0.95362 0.97478 1.01766 1.21674 0.95774 0.96146 1.02245 1.21418 0.94265 0.95341 1.02587 1.21354 0.92905 0.97556 1.01118 0.87046 1.21458 1.00739 0.99427 0.93206 1.21851 1.01487 1.00473 0.97139 1.20434 0.89957 0.81919 0.75972 1.90553 1.68874 1.34356 1.51880 1.48169 1.05577 1.18924 1.59780 1.19488 0.91498 0.83004 0.94516 1.21515 1.34093 1.03656 0.98272 0.92199 1.24918 0.95668 0.94847 0.98250 1.69914 1.38169 1.07448 1.37348 0.86563 0.78159 0.78563 0.84638 1.20549 1.21043 1.19732 1.20828 0.81322 1.00223 0.95272 1.22794 0.92835 1.02327 0.99756 1.22962 1.04828 0.96882 0.96653 1.22908 0.95596 1.00640 1.02727 0.92755 0.92915 0.93240 0.92336 0.92204 0.91760 0.91950 0.91326 0.92186 0.91158 0.91378 0.93498 0.92511 0.92574 0.94729 0.93987 0.92554 0.90499 0.90712 0.87895 0.88821 0.89576 0.89205 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.49 5.93 -26.73 -0.16 -1.65 16 3 C -0.12 -1.67 4.86 -26.73 -0.13 -1.80 16 4 C -0.10 -1.61 3.83 -26.73 -0.10 -1.71 16 5 C -0.11 -2.00 1.66 -91.77 -0.15 -2.16 16 6 H 0.11 2.31 6.48 -51.93 -0.34 1.98 16 7 C -0.11 -1.82 5.20 -26.73 -0.14 -1.96 16 8 C -0.15 -2.31 9.32 37.16 0.35 -1.97 16 9 C 0.53 11.01 5.66 -10.98 -0.06 10.95 16 10 O -0.58 -12.86 15.36 5.55 0.09 -12.77 16 11 N -0.59 -12.53 2.47 -175.05 -0.43 -12.96 16 12 C 0.23 5.50 4.83 -5.19 -0.03 5.48 16 13 C -0.54 -13.83 8.48 -34.44 -0.29 -14.12 16 14 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -24.23 13.29 55.43 0.74 -23.50 16 17 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.15 2.78 5.73 -4.04 -0.02 2.76 16 22 C -0.16 -2.60 6.01 -90.62 -0.54 -3.14 16 23 C -0.18 -2.57 10.18 -26.70 -0.27 -2.84 16 24 C -0.18 -2.46 10.25 -26.70 -0.27 -2.73 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.81 6.81 -51.93 -0.35 0.46 16 32 H 0.07 1.12 6.05 -51.93 -0.31 0.81 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 35 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.82 6.27 -51.93 -0.33 0.49 16 38 H 0.06 0.96 7.05 -51.93 -0.37 0.60 16 39 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 40 H 0.04 1.01 5.08 -51.93 -0.26 0.74 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 43 H 0.07 1.44 6.99 -51.93 -0.36 1.07 16 44 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 45 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -27.47 375.18 -9.41 -36.89 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.88 Total: 5.74 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.56 Total: -14.50 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.30 Total: -36.46 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.47 -9.41 -36.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344401973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.119 kcal (2) G-P(sol) polarization free energy of solvation -27.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds