Wall clock time and date at job start Tue Mar 31 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47092 * 2 1 4 4 C 1.52998 * 109.47008 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47324 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.46900 * 304.99620 * 5 4 3 7 7 C 1.52999 * 109.47626 * 64.99646 * 5 4 3 8 8 C 1.52995 * 109.47635 * 194.94046 * 7 5 4 9 9 C 1.50700 * 109.47332 * 184.99971 * 5 4 3 10 10 O 1.21282 * 119.99874 * 308.05593 * 9 5 4 11 11 N 1.34781 * 120.00064 * 128.05518 * 9 5 4 12 12 C 1.46496 * 120.00003 * 358.00306 * 11 9 5 13 13 C 1.50706 * 109.47216 * 119.02976 * 12 11 9 14 14 H 1.08004 * 119.99580 * 2.12478 * 13 12 11 15 15 C 1.37874 * 120.00278 * 182.12223 * 13 12 11 16 16 N 1.31512 * 119.99843 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99994 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46951 * 60.00298 * 17 15 13 19 19 H 1.48501 * 109.46735 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47196 * 299.99813 * 17 15 13 21 21 C 1.46496 * 119.99679 * 177.99943 * 11 9 5 22 22 C 1.53005 * 109.46898 * 94.31419 * 21 11 9 23 23 C 1.52999 * 117.49759 * 246.14404 * 22 21 11 24 24 C 1.53002 * 117.49786 * 177.48783 * 22 21 11 25 25 H 1.08993 * 109.47326 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47002 * 300.00467 * 1 2 3 27 27 H 1.09006 * 109.46781 * 60.00013 * 1 2 3 28 28 H 1.08999 * 109.47002 * 239.99533 * 2 1 3 29 29 H 1.09004 * 109.46690 * 119.99447 * 2 1 3 30 30 H 1.08999 * 109.47578 * 59.99886 * 3 2 1 31 31 H 1.09006 * 109.47296 * 299.99671 * 3 2 1 32 32 H 1.09001 * 109.47566 * 59.99647 * 4 3 2 33 33 H 1.08997 * 109.47363 * 299.99362 * 4 3 2 34 34 H 1.09001 * 109.47134 * 74.93299 * 7 5 4 35 35 H 1.08999 * 109.46785 * 314.94324 * 7 5 4 36 36 H 1.09000 * 109.47117 * 198.14345 * 8 7 5 37 37 H 1.08997 * 109.47406 * 78.13402 * 8 7 5 38 38 H 1.09004 * 109.46595 * 318.13490 * 8 7 5 39 39 H 1.08995 * 109.47424 * 239.02984 * 12 11 9 40 40 H 1.09000 * 109.47407 * 359.03357 * 12 11 9 41 41 H 0.96999 * 120.00445 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.46929 * 214.31117 * 21 11 9 43 43 H 1.08995 * 109.47538 * 334.31173 * 21 11 9 44 44 H 1.08993 * 115.54799 * 31.82071 * 22 21 11 45 45 H 1.09000 * 117.49986 * 0.02562 * 23 22 21 46 46 H 1.09002 * 117.49307 * 145.01925 * 23 22 21 47 47 H 1.09004 * 117.49901 * 214.98036 * 24 22 21 48 48 H 1.09006 * 117.49949 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6452 3.4244 -0.8414 7 6 3.6759 3.5683 1.3078 8 6 3.8464 5.0821 1.1662 9 6 5.5820 2.8868 -0.1245 10 8 6.2538 2.2158 0.6301 11 7 6.1786 3.6340 -1.0743 12 6 5.3654 4.4102 -2.0137 13 6 5.6856 5.8752 -1.8638 14 1 6.4457 6.1931 -1.1655 15 6 5.0083 6.8097 -2.6182 16 7 4.0825 6.4226 -3.4682 17 14 5.4057 8.6254 -2.4328 18 1 6.8329 8.8569 -2.7718 19 1 4.5444 9.4165 -3.3480 20 1 5.1553 9.0464 -1.0309 21 6 7.6401 3.6701 -1.1673 22 6 8.1122 2.6293 -2.1846 23 6 8.9295 1.4476 -1.6588 24 6 9.6133 2.5508 -2.4701 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9331 0.9287 -0.8908 33 1 3.9338 0.9286 0.8891 34 1 4.3086 3.2056 2.1180 35 1 2.6338 3.3393 1.5304 36 1 3.8758 5.5386 2.1556 37 1 3.0081 5.4910 0.6022 38 1 4.7769 5.2953 0.6400 39 1 5.5853 4.0928 -3.0330 40 1 4.3089 4.2458 -1.8019 41 1 3.6062 7.0799 -3.9992 42 1 7.9595 4.6619 -1.4873 43 1 8.0719 3.4465 -0.1918 44 1 7.4315 2.4409 -3.0147 45 1 9.1305 1.4113 -0.5881 46 1 8.7866 0.4817 -2.1433 47 1 9.9201 2.3103 -3.4881 48 1 10.2645 3.2409 -1.9335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344401974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:16 Heat of formation + Delta-G solvation = -46.463357 kcal Electronic energy + Delta-G solvation = -23458.718937 eV Core-core repulsion = 20320.295931 eV Total energy + Delta-G solvation = -3138.423007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.56046 -37.15479 -35.99505 -34.70042 -33.66033 -32.43710 -30.18775 -27.91295 -27.13922 -25.59531 -22.90776 -22.51442 -22.04390 -21.80033 -20.69919 -19.88229 -17.88900 -16.81344 -16.31066 -15.61779 -15.38203 -14.82689 -14.52660 -14.30182 -13.88432 -13.70036 -13.45436 -13.38902 -12.88326 -12.52931 -12.31463 -12.26480 -11.98065 -11.84228 -11.44827 -11.27625 -11.18961 -11.16396 -10.99243 -10.90924 -10.90254 -10.78987 -10.64135 -10.31049 -10.28189 -10.06870 -10.04518 -9.95307 -9.52682 -9.47692 -8.82883 -8.48601 -7.63798 -6.18324 -4.23732 3.23963 3.29166 3.31171 3.45457 3.89546 4.25135 4.33967 4.94178 5.01661 5.13708 5.15126 5.16809 5.29063 5.31265 5.37421 5.46497 5.52658 5.64790 5.76871 5.82675 5.86841 5.89141 5.91197 5.96255 6.01415 6.09256 6.15591 6.20766 6.22100 6.25655 6.29227 6.35391 6.41517 6.43330 6.51460 6.58324 6.61636 6.70057 6.72947 6.95889 7.04664 7.26142 7.56026 7.73270 8.04024 8.47444 8.79253 9.08793 9.43042 10.89253 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010370 B = 0.006400 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.576911 B = 4374.135819 C = 6099.729312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.118 4.118 6 H 0.107 0.893 7 C -0.105 4.105 8 C -0.158 4.158 9 C 0.520 3.480 10 O -0.574 6.574 11 N -0.590 5.590 12 C 0.231 3.769 13 C -0.531 4.531 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.891 5.891 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.149 3.851 22 C -0.155 4.155 23 C -0.177 4.177 24 C -0.181 4.181 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.024 0.976 40 H 0.053 0.947 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -8.181 4.303 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.138 4.138 6 H 0.124 0.876 7 C -0.143 4.143 8 C -0.216 4.216 9 C 0.308 3.692 10 O -0.455 6.455 11 N -0.319 5.319 12 C 0.112 3.888 13 C -0.570 4.570 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.026 3.974 22 C -0.174 4.174 23 C -0.214 4.214 24 C -0.218 4.218 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.225 -8.427 4.528 9.645 hybrid contribution 0.149 1.149 -0.225 1.180 sum -1.076 -7.278 4.303 8.523 Atomic orbital electron populations 1.21779 0.96188 1.01152 1.01820 1.21526 0.95502 0.97316 1.01826 1.21693 0.95352 0.96352 1.02441 1.21404 0.94917 0.95117 1.02364 1.21585 0.93066 0.97829 1.01361 0.87566 1.21461 1.01034 0.95995 0.95809 1.21878 1.04119 0.94720 1.00837 1.20491 0.90129 0.78663 0.79911 1.90560 1.66360 1.43915 1.44666 1.48199 1.06261 1.45139 1.32314 1.19581 0.91342 0.90222 0.87702 1.21301 1.21529 0.90925 1.23245 0.92102 1.24887 0.94771 0.99086 0.94862 1.69905 1.23841 1.34601 1.24573 0.86618 0.78434 0.84662 0.78142 1.20148 1.21195 1.20095 1.20821 0.81271 0.98004 0.97336 1.22736 0.93398 0.99525 1.01776 1.22958 1.04984 0.93546 0.99936 1.22891 0.95527 1.02597 1.00811 0.93163 0.92876 0.92701 0.92183 0.92245 0.91644 0.91699 0.92243 0.91465 0.92044 0.91558 0.93826 0.92528 0.90547 0.95776 0.92938 0.92513 0.89636 0.91141 0.87951 0.88855 0.89681 0.89260 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.39 5.93 -26.73 -0.16 -1.55 16 3 C -0.12 -1.56 5.00 -26.73 -0.13 -1.69 16 4 C -0.10 -1.54 4.48 -26.73 -0.12 -1.66 16 5 C -0.12 -2.09 1.87 -91.77 -0.17 -2.26 16 6 H 0.11 2.04 4.98 -51.93 -0.26 1.78 16 7 C -0.11 -1.73 5.37 -26.73 -0.14 -1.87 16 8 C -0.16 -2.81 9.92 37.16 0.37 -2.44 16 9 C 0.52 10.69 5.74 -10.98 -0.06 10.62 16 10 O -0.57 -12.87 16.17 5.56 0.09 -12.78 16 11 N -0.59 -12.38 2.60 -175.06 -0.46 -12.84 16 12 C 0.23 5.37 5.38 -5.19 -0.03 5.34 16 13 C -0.53 -13.36 7.87 -34.44 -0.27 -13.63 16 14 H 0.06 1.54 7.25 -52.48 -0.38 1.16 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 17 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 21 C 0.15 2.89 5.57 -4.04 -0.02 2.87 16 22 C -0.16 -2.68 6.01 -90.62 -0.54 -3.22 16 23 C -0.18 -2.71 10.18 -26.70 -0.27 -2.98 16 24 C -0.18 -2.59 10.25 -26.69 -0.27 -2.86 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.81 6.30 -51.93 -0.33 0.48 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.07 0.94 6.02 -51.93 -0.31 0.63 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.58 6.47 -51.93 -0.34 1.24 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 1.25 4.92 -51.93 -0.26 1.00 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.09 1.70 7.00 -51.93 -0.36 1.33 16 43 H 0.07 1.38 7.07 -51.93 -0.37 1.01 16 44 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 45 H 0.09 1.47 8.04 -51.93 -0.42 1.05 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -27.18 378.24 -9.42 -36.60 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.90 Total: 6.25 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.56 Total: -14.83 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.28 Total: -36.15 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.18 -9.42 -36.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344401974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.866 kcal (2) G-P(sol) polarization free energy of solvation -27.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds