Wall clock time and date at job start Tue Mar 31 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47505 * 2 1 4 4 C 1.53001 * 109.46901 * 120.00066 * 2 1 3 5 5 C 1.53000 * 115.56024 * 272.80057 * 4 2 1 6 6 C 1.52998 * 117.49949 * 127.11886 * 4 2 1 7 7 C 1.52999 * 117.50485 * 58.49356 * 4 2 1 8 8 H 1.08995 * 117.52090 * 214.97383 * 7 4 2 9 9 C 1.50708 * 117.49448 * 359.97438 * 7 4 2 10 10 O 1.21285 * 119.99734 * 44.13285 * 9 7 4 11 11 N 1.34769 * 120.00032 * 224.12612 * 9 7 4 12 12 C 1.46501 * 119.99956 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47050 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46989 * 60.00493 * 13 12 11 15 15 C 1.52998 * 109.47357 * 300.00300 * 13 12 11 16 16 C 1.53001 * 109.46893 * 179.97438 * 13 12 11 17 17 C 1.50702 * 109.46987 * 180.02562 * 16 13 12 18 18 H 1.08005 * 120.00085 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99901 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00224 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99747 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46749 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47057 * 299.99886 * 21 19 17 24 24 H 1.48495 * 109.47268 * 60.00057 * 21 19 17 25 25 H 1.09009 * 109.46970 * 300.05168 * 1 2 3 26 26 H 1.09003 * 109.47206 * 60.04542 * 1 2 3 27 27 H 1.08996 * 109.47658 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46939 * 239.99207 * 2 1 3 29 29 H 1.09003 * 109.47231 * 172.66803 * 3 2 1 30 30 H 1.08999 * 109.46970 * 292.66287 * 3 2 1 31 31 H 1.08994 * 109.47581 * 52.66579 * 3 2 1 32 32 H 1.08999 * 109.47516 * 205.69330 * 5 4 2 33 33 H 1.09006 * 109.47409 * 325.69123 * 5 4 2 34 34 H 1.09003 * 109.47096 * 85.68922 * 5 4 2 35 35 H 1.08998 * 117.50513 * 145.01969 * 6 4 2 36 36 H 1.08997 * 117.49807 * 359.97438 * 6 4 2 37 37 H 0.97003 * 120.00269 * 359.97438 * 11 9 7 38 38 H 1.08997 * 109.46858 * 60.00268 * 12 11 9 39 39 H 1.09000 * 109.47336 * 299.99990 * 12 11 9 40 40 H 1.09002 * 109.47179 * 179.97438 * 14 13 12 41 41 H 1.09005 * 109.46990 * 299.99306 * 14 13 12 42 42 H 1.09000 * 109.47343 * 59.99859 * 14 13 12 43 43 H 1.09003 * 109.46816 * 299.99442 * 15 13 12 44 44 H 1.08991 * 109.47402 * 60.00036 * 15 13 12 45 45 H 1.09002 * 109.47000 * 179.97438 * 15 13 12 46 46 H 1.09004 * 109.47042 * 60.00907 * 16 13 12 47 47 H 1.09000 * 109.47623 * 300.00254 * 16 13 12 48 48 H 0.97001 * 119.99831 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.1964 0.1502 2.4970 6 6 3.0475 -1.8550 1.0486 7 6 1.6068 -2.1746 1.4524 8 1 1.4332 -2.5102 2.4748 9 6 0.7099 -2.7859 0.4068 10 8 0.9439 -2.6108 -0.7703 11 7 -0.3520 -3.5271 0.7798 12 6 -1.2235 -4.1219 -0.2366 13 6 -2.3435 -4.9075 0.4484 14 6 -3.1614 -3.9639 1.3325 15 6 -1.7357 -6.0156 1.3107 16 6 -3.2540 -5.5281 -0.6131 17 6 -4.3576 -6.3014 0.0615 18 1 -4.4051 -6.3455 1.1396 19 6 -5.3067 -6.9526 -0.6975 20 7 -5.2486 -6.8994 -2.0103 21 14 -6.6750 -7.9106 0.1388 22 1 -7.5580 -8.5140 -0.8916 23 1 -6.0859 -8.9859 0.9765 24 1 -7.4686 -6.9939 0.9961 25 1 -0.3633 0.5147 0.8896 26 1 -0.3634 0.5131 -0.8904 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 3.1222 1.4452 0.1312 30 1 1.7879 1.9169 -0.9483 31 1 1.5737 1.9928 0.8170 32 1 2.9499 -0.2860 3.1528 33 1 2.5069 1.1530 2.2034 34 1 1.2437 0.2046 3.0240 35 1 3.8218 -1.9801 1.8055 36 1 3.3468 -2.0873 0.0266 37 1 -0.5389 -3.6676 1.7212 38 1 -0.6409 -4.7944 -0.8662 39 1 -1.6562 -3.3325 -0.8512 40 1 -3.9596 -4.5235 1.8201 41 1 -2.5130 -3.5214 2.0888 42 1 -3.5944 -3.1745 0.7182 43 1 -1.1531 -6.6878 0.6807 44 1 -1.0873 -5.5731 2.0669 45 1 -2.5337 -6.5749 1.7990 46 1 -2.6717 -6.2003 -1.2433 47 1 -3.6871 -4.7384 -1.2271 48 1 -4.5383 -6.4016 -2.4445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345877216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:24 Heat of formation + Delta-G solvation = -48.889844 kcal Electronic energy + Delta-G solvation = -23204.829724 eV Core-core repulsion = 20066.301498 eV Total energy + Delta-G solvation = -3138.528227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55235 -38.24967 -36.80001 -33.75395 -33.52188 -32.13457 -29.03774 -26.98464 -26.81977 -26.58983 -26.56872 -23.86254 -22.67509 -22.40068 -20.17173 -19.00487 -18.17278 -17.03443 -16.48753 -15.78650 -15.45998 -14.81779 -14.73081 -14.02591 -13.94988 -13.84859 -13.60210 -13.32467 -13.13367 -12.79896 -12.75866 -12.60581 -12.14655 -12.04352 -11.77322 -11.76359 -11.34934 -11.21345 -11.18676 -11.16642 -11.02562 -10.75403 -10.65927 -10.27029 -10.19162 -10.10803 -9.99885 -9.88413 -9.65129 -9.36735 -8.74363 -8.47443 -8.32007 -6.33300 -4.02436 2.55831 3.36120 3.43439 3.44736 3.63416 3.76625 4.43114 4.54471 4.56619 4.68122 4.77234 5.02945 5.10575 5.21048 5.32838 5.39879 5.40610 5.49065 5.54498 5.56077 5.58580 5.61152 5.65148 5.76319 5.82014 5.87352 5.89381 5.92995 6.09288 6.12771 6.17392 6.20000 6.30676 6.33269 6.40695 6.52122 6.55136 6.72086 6.95882 6.98292 7.02332 7.34140 7.49106 7.74165 8.21552 8.44427 8.47147 8.89823 9.68595 11.06616 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033853 B = 0.003340 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.904292 B = 8381.254338 C = 8529.773211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.086 4.086 5 C -0.122 4.122 6 C -0.141 4.141 7 C -0.189 4.189 8 H 0.115 0.885 9 C 0.542 3.458 10 O -0.544 6.544 11 N -0.720 5.720 12 C 0.129 3.871 13 C -0.066 4.066 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.023 3.977 17 C -0.592 4.592 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.914 5.914 21 Si 1.066 2.934 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.289 1.289 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.030 0.970 45 H 0.068 0.932 46 H 0.008 0.992 47 H 0.008 0.992 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.066 13.419 10.032 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.179 4.179 6 C -0.179 4.179 7 C -0.211 4.211 8 H 0.133 0.867 9 C 0.329 3.671 10 O -0.423 6.423 11 N -0.371 5.371 12 C 0.006 3.994 13 C -0.066 4.066 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.014 4.014 17 C -0.630 4.630 18 H 0.071 0.929 19 C -0.190 4.190 20 N -0.550 5.550 21 Si 0.894 3.106 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.215 1.215 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.861 12.597 8.886 20.731 hybrid contribution 1.178 0.683 0.831 1.595 sum 15.039 13.280 9.717 22.293 Atomic orbital electron populations 1.21926 0.94922 1.02621 1.00985 1.20690 0.95914 0.95229 0.96114 1.21893 1.00745 0.95949 1.01523 1.21548 1.01697 0.87752 0.97641 1.21505 1.01803 0.99695 0.94867 1.23219 0.90156 1.01080 1.03400 1.22419 0.98389 1.00665 0.99587 0.86676 1.19443 0.80765 0.77956 0.88964 1.90681 1.72486 1.60625 1.18508 1.46139 1.27999 1.52131 1.10834 1.21599 0.91036 0.96602 0.90166 1.20754 0.93868 0.94585 0.97397 1.21748 0.99567 0.98650 0.98343 1.21745 0.99982 0.98149 0.98437 1.19208 0.93925 0.95127 0.93157 1.21975 1.12178 1.34521 0.94331 0.92884 1.25787 1.00305 0.97142 0.95797 1.70772 1.34602 1.40646 1.09022 0.83586 0.75832 0.76112 0.75037 1.20874 1.21544 1.21531 0.93341 0.92867 0.91841 0.89503 0.92667 0.92779 0.92594 0.92423 0.90982 0.92080 0.88214 0.87701 0.76696 0.92010 0.92012 0.91318 0.95107 0.93503 0.93497 0.95117 0.91314 0.97348 0.97344 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.70 37.16 0.32 -1.53 16 2 C -0.06 -0.69 2.24 -90.62 -0.20 -0.90 16 3 C -0.14 -1.28 7.89 37.16 0.29 -0.99 16 4 C -0.09 -0.86 1.94 -154.51 -0.30 -1.16 16 5 C -0.12 -0.94 9.49 37.16 0.35 -0.59 16 6 C -0.14 -1.42 9.34 -26.73 -0.25 -1.67 16 7 C -0.19 -2.12 5.81 -91.77 -0.53 -2.65 16 8 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 9 C 0.54 7.98 4.94 -10.99 -0.05 7.93 16 10 O -0.54 -9.77 13.63 5.55 0.08 -9.69 16 11 N -0.72 -10.52 4.96 -60.29 -0.30 -10.82 16 12 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 13 C -0.07 -1.26 0.54 -154.51 -0.08 -1.34 16 14 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 15 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 16 C 0.02 0.57 3.35 -27.88 -0.09 0.48 16 17 C -0.59 -15.91 7.65 -34.44 -0.26 -16.17 16 18 H 0.05 1.38 5.68 -52.48 -0.30 1.08 16 19 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 20 N -0.91 -27.80 13.65 55.43 0.76 -27.04 16 21 Si 1.07 24.91 29.90 -169.99 -5.08 19.83 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.94 4.67 -51.93 -0.24 0.70 16 28 H 0.09 1.19 6.75 -51.93 -0.35 0.83 16 29 H 0.05 0.44 8.03 -51.93 -0.42 0.03 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 6.99 -51.93 -0.36 0.09 16 32 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 33 H 0.07 0.50 5.69 -51.93 -0.30 0.21 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.78 8.05 -51.93 -0.42 0.37 16 36 H 0.10 1.21 7.78 -51.93 -0.40 0.81 16 37 H 0.40 5.01 6.16 -40.82 -0.25 4.76 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 1.33 6.61 -51.93 -0.34 0.98 16 41 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 45 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 46 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 47 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 48 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -30.63 362.66 -7.99 -38.62 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.58 Total: 3.57 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -0.33 Total: -19.93 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.46 Total: -37.86 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.63 -7.99 -38.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345877216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.271 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds