Wall clock time and date at job start Tue Mar 31 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 C 1.52999 * 109.47112 * 120.00296 * 2 1 3 5 5 C 1.52998 * 115.55033 * 296.03816 * 4 2 1 6 6 C 1.52995 * 117.51838 * 81.74507 * 4 2 1 7 7 C 1.52998 * 60.00230 * 107.47717 * 6 4 2 8 8 H 1.09003 * 117.51981 * 107.47953 * 7 6 4 9 9 C 1.50696 * 117.50022 * 252.50881 * 7 6 4 10 10 O 1.21285 * 120.00250 * 93.58377 * 9 7 6 11 11 N 1.34779 * 120.00131 * 273.58234 * 9 7 6 12 12 C 1.46504 * 120.00231 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47192 * 300.00147 * 13 12 11 15 15 C 1.52999 * 109.47094 * 60.00384 * 13 12 11 16 16 C 1.53002 * 109.46855 * 179.97438 * 13 12 11 17 17 C 1.50697 * 109.47061 * 179.97438 * 16 13 12 18 18 H 1.08000 * 120.00287 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00166 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99745 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00111 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46894 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46843 * 120.00679 * 21 19 17 24 24 H 1.48498 * 109.47221 * 240.00748 * 21 19 17 25 25 H 1.09004 * 109.47108 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47092 * 299.99550 * 1 2 3 27 27 H 1.09000 * 109.47531 * 59.99636 * 1 2 3 28 28 H 1.09000 * 109.47092 * 240.00450 * 2 1 3 29 29 H 1.08996 * 109.47522 * 171.71198 * 3 2 1 30 30 H 1.09008 * 109.47300 * 291.71374 * 3 2 1 31 31 H 1.09006 * 109.46765 * 51.70885 * 3 2 1 32 32 H 1.08995 * 109.47313 * 274.33589 * 5 4 2 33 33 H 1.09001 * 109.46951 * 34.33729 * 5 4 2 34 34 H 1.09001 * 109.47107 * 154.32969 * 5 4 2 35 35 H 1.09000 * 117.49816 * 214.97004 * 6 4 2 36 36 H 1.09002 * 117.50257 * 359.97438 * 6 4 2 37 37 H 0.97000 * 120.00100 * 0.02562 * 11 9 7 38 38 H 1.09003 * 109.46891 * 300.00291 * 12 11 9 39 39 H 1.09000 * 109.46648 * 59.99800 * 12 11 9 40 40 H 1.08996 * 109.47568 * 59.99741 * 14 13 12 41 41 H 1.09000 * 109.47118 * 180.02562 * 14 13 12 42 42 H 1.09007 * 109.46990 * 299.99908 * 14 13 12 43 43 H 1.09003 * 109.47454 * 59.99513 * 15 13 12 44 44 H 1.09000 * 109.47054 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.47194 * 299.99497 * 15 13 12 46 46 H 1.09003 * 109.47028 * 300.00080 * 16 13 12 47 47 H 1.09000 * 109.47262 * 59.99771 * 16 13 12 48 48 H 0.97002 * 119.99643 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6886 -0.0593 2.5831 6 6 2.0919 -2.2499 1.2111 7 6 3.3877 -1.4387 1.1499 8 1 4.0242 -1.4388 2.0347 9 6 4.1109 -1.3813 -0.1709 10 8 3.9009 -0.4656 -0.9381 11 7 4.9912 -2.3474 -0.4998 12 6 5.6939 -2.2919 -1.7841 13 6 6.6265 -3.4985 -1.9078 14 6 7.6459 -3.4741 -0.7672 15 6 5.8058 -4.7874 -1.8309 16 6 7.3599 -3.4408 -3.2494 17 6 8.2789 -4.6289 -3.3709 18 1 8.3341 -5.3530 -2.5715 19 6 9.0486 -4.7921 -4.5032 20 7 8.9810 -3.9107 -5.4770 21 14 10.1873 -6.2652 -4.6542 22 1 10.0788 -7.1019 -3.4322 23 1 9.8006 -7.0701 -5.8408 24 1 11.5872 -5.7949 -4.8099 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1199 1.4461 0.1481 30 1 1.8027 1.9118 -0.9548 31 1 1.5607 1.9973 0.8066 32 1 2.4360 0.6975 2.8211 33 1 0.7075 0.4096 2.5086 34 1 1.6720 -0.8136 3.3698 35 1 1.8757 -2.7840 2.1364 36 1 1.7623 -2.7421 0.2961 37 1 5.1590 -3.0799 0.1135 38 1 4.9676 -2.3097 -2.5967 39 1 6.2782 -1.3734 -1.8391 40 1 7.1232 -3.5154 0.1883 41 1 8.3106 -4.3335 -0.8556 42 1 8.2307 -2.5558 -0.8221 43 1 5.0794 -4.8048 -2.6435 44 1 6.4701 -5.6470 -1.9194 45 1 5.2830 -4.8288 -0.8753 46 1 6.6333 -3.4584 -4.0617 47 1 7.9445 -2.5225 -3.3047 48 1 9.5228 -4.0253 -6.2734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345877221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:29 Heat of formation + Delta-G solvation = -47.841791 kcal Electronic energy + Delta-G solvation = -22970.295599 eV Core-core repulsion = 19831.812819 eV Total energy + Delta-G solvation = -3138.482780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35910 -38.17058 -36.71111 -33.82259 -33.23231 -32.00826 -28.78018 -27.18144 -27.09041 -26.51442 -26.40018 -23.90388 -22.69076 -22.40803 -20.10180 -18.85250 -17.91761 -16.73600 -16.33576 -15.75007 -15.42095 -14.69694 -14.48462 -14.47989 -13.96725 -13.62849 -13.30042 -13.27532 -13.00639 -12.86456 -12.67749 -12.37116 -12.17393 -12.06893 -12.00635 -11.92188 -11.31318 -11.17527 -11.05778 -11.02682 -10.84227 -10.65629 -10.60544 -10.40638 -10.24703 -10.08237 -9.87428 -9.85978 -9.49489 -9.11353 -8.91095 -8.64394 -8.36837 -6.00688 -4.01901 2.76844 3.29491 3.32854 3.37773 3.40212 3.67611 4.44472 4.47542 4.60691 4.69420 4.87504 5.13895 5.26136 5.31344 5.34951 5.41089 5.48185 5.55530 5.57112 5.62935 5.63321 5.72091 5.75173 5.80923 5.85392 5.91833 6.00505 6.03733 6.17461 6.23015 6.28105 6.29370 6.39574 6.48146 6.54963 6.61871 6.62680 6.81048 7.06315 7.07008 7.13085 7.63669 7.75862 7.81495 7.98295 8.39850 8.51134 9.03201 9.61324 11.10825 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.003190 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.043632 B = 8775.753902 C = 9055.589733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.129 4.129 4 C -0.085 4.085 5 C -0.116 4.116 6 C -0.155 4.155 7 C -0.184 4.184 8 H 0.123 0.877 9 C 0.534 3.466 10 O -0.534 6.534 11 N -0.718 5.718 12 C 0.129 3.871 13 C -0.073 4.073 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.029 0.971 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.029 0.971 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.565 4.833 15.899 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.186 4.186 4 C -0.085 4.085 5 C -0.173 4.173 6 C -0.192 4.192 7 C -0.205 4.205 8 H 0.141 0.859 9 C 0.320 3.680 10 O -0.411 6.411 11 N -0.369 5.369 12 C 0.006 3.994 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.627 5.532 15.154 21.776 hybrid contribution 0.946 -1.241 0.090 1.563 sum -13.680 4.291 15.244 20.927 Atomic orbital electron populations 1.21875 0.95862 1.01313 1.01297 1.20765 0.94106 0.96878 0.96088 1.21639 1.01826 0.94832 1.00321 1.21528 0.96523 0.93134 0.97336 1.21372 1.01842 1.00302 0.93747 1.23173 0.98277 0.94085 1.03651 1.22381 0.91587 1.08736 0.97762 0.85913 1.19633 0.79430 0.82088 0.86876 1.90675 1.64110 1.34263 1.52092 1.46201 1.42849 1.26516 1.21346 1.21607 0.94648 0.99467 0.83665 1.20899 0.94351 0.92397 0.99651 1.21755 0.98718 1.02534 0.95384 1.21756 0.99266 0.98553 0.98806 1.19090 0.94656 0.97469 0.88932 1.21224 1.22903 1.08308 1.02439 0.92208 1.25020 0.97208 0.96282 0.96023 1.69978 1.40784 1.35298 1.07325 0.86595 0.80791 0.82983 0.77973 1.19798 1.21132 1.21127 0.93045 0.92968 0.92838 0.89268 0.91855 0.93310 0.94031 0.92066 0.91634 0.92559 0.88091 0.88442 0.76693 0.91960 0.91906 0.95238 0.91463 0.93413 0.93434 0.91473 0.95212 0.96384 0.96381 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.03 37.16 0.34 -1.06 16 2 C -0.06 -0.70 1.96 -90.62 -0.18 -0.87 16 3 C -0.13 -1.54 8.24 37.16 0.31 -1.23 16 4 C -0.08 -0.86 1.62 -154.51 -0.25 -1.11 16 5 C -0.12 -0.93 8.97 37.16 0.33 -0.60 16 6 C -0.15 -1.44 9.60 -26.73 -0.26 -1.70 16 7 C -0.18 -2.00 5.90 -91.77 -0.54 -2.55 16 8 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 9 C 0.53 7.76 7.19 -10.99 -0.08 7.68 16 10 O -0.53 -9.42 12.28 5.55 0.07 -9.35 16 11 N -0.72 -10.32 4.96 -60.29 -0.30 -10.62 16 12 C 0.13 2.27 4.56 -4.04 -0.02 2.25 16 13 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 14 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 17 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 18 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 21 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 6.66 -51.93 -0.35 0.09 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16 29 H 0.06 0.87 7.03 -51.93 -0.37 0.51 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.04 0.42 7.76 -51.93 -0.40 0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.49 6.49 -51.93 -0.34 0.15 16 34 H 0.06 0.39 7.90 -51.93 -0.41 -0.03 16 35 H 0.10 0.74 8.05 -51.93 -0.42 0.33 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 4.94 6.16 -40.82 -0.25 4.68 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 41 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 45 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -29.68 366.83 -8.04 -37.72 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.74 Total: 2.32 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.31 Total: -16.05 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.44 Total: -36.32 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.68 -8.04 -37.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345877221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.124 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds