Wall clock time and date at job start Tue Mar 31 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 5 5 C 1.50709 * 109.47079 * 59.99964 * 4 2 1 6 6 H 1.08001 * 119.99331 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00295 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47410 * 89.99542 * 9 7 5 11 11 H 1.48504 * 109.46876 * 209.99820 * 9 7 5 12 12 H 1.48506 * 109.47254 * 329.99302 * 9 7 5 13 13 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 14 14 N 1.46506 * 109.47237 * 300.00146 * 13 2 1 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 2 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 14 13 18 18 H 1.09004 * 110.42773 * 59.29771 * 17 15 14 19 19 C 1.54892 * 110.48283 * 296.76212 * 17 15 14 20 20 C 1.54888 * 102.74651 * 203.37611 * 19 17 15 21 21 C 1.54266 * 104.19565 * 37.94079 * 20 19 17 22 22 C 1.53001 * 110.02971 * 95.67449 * 21 20 19 23 23 C 1.52999 * 110.03464 * 217.05479 * 21 20 19 24 24 C 1.54090 * 106.62442 * 336.28197 * 21 20 19 25 25 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 26 26 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 27 27 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 30 30 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 31 31 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47235 * 299.99931 * 4 2 1 33 33 H 0.96994 * 119.99926 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47671 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.47454 * 60.00483 * 13 2 1 36 36 H 0.97005 * 119.99811 * 0.02562 * 14 13 2 37 37 H 1.09003 * 110.75703 * 321.69015 * 19 17 15 38 38 H 1.08998 * 110.75482 * 85.06715 * 19 17 15 39 39 H 1.08998 * 110.48998 * 156.62233 * 20 19 17 40 40 H 1.08998 * 110.48921 * 279.26771 * 20 19 17 41 41 H 1.09001 * 109.47000 * 61.45763 * 22 21 20 42 42 H 1.09004 * 109.47068 * 181.45218 * 22 21 20 43 43 H 1.09002 * 109.47325 * 301.45422 * 22 21 20 44 44 H 1.09001 * 109.46903 * 58.54686 * 23 21 20 45 45 H 1.09001 * 109.47366 * 178.54512 * 23 21 20 46 46 H 1.08997 * 109.47423 * 298.55096 * 23 21 20 47 47 H 1.08993 * 110.16008 * 240.87825 * 24 21 20 48 48 H 1.09002 * 110.00782 * 119.37863 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4324 0.1381 -4.8058 9 14 2.9452 -2.0003 -3.9033 10 1 2.0868 -3.2111 -3.9492 11 1 3.7376 -1.9074 -5.1558 12 1 3.8653 -2.0897 -2.7410 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8726 -0.4943 3.6695 16 8 2.5661 -1.4830 3.7808 17 6 1.3698 0.2158 4.9000 18 1 0.2800 0.2396 4.9070 19 6 1.9439 1.6528 4.9693 20 6 1.8558 1.9835 6.4798 21 6 2.2150 0.6563 7.1793 22 6 3.7012 0.6407 7.5424 23 6 1.3660 0.4818 8.4401 24 6 1.9031 -0.4698 6.1749 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1300 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2492 33 1 1.6668 -0.1933 -5.6867 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 2.9793 1.6718 4.6293 38 1 1.3321 2.3416 4.3868 39 1 2.5742 2.7600 6.7429 40 1 0.8447 2.2927 6.7444 41 1 3.9146 1.4550 8.2349 42 1 3.9504 -0.3107 8.0124 43 1 4.2974 0.7666 6.6386 44 1 0.3097 0.4954 8.1716 45 1 1.6085 -0.4700 8.9127 46 1 1.5748 1.2958 9.1343 47 1 1.1459 -1.1387 6.5837 48 1 2.8111 -1.0280 5.9466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345890744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:58 Heat of formation + Delta-G solvation = -82.794865 kcal Electronic energy + Delta-G solvation = -22910.475871 eV Core-core repulsion = 19770.477412 eV Total energy + Delta-G solvation = -3139.998459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29776 -38.49002 -37.05878 -33.69381 -32.60650 -31.92917 -29.15958 -27.85298 -27.53961 -26.56455 -26.55420 -24.65663 -22.68697 -21.63135 -19.86869 -18.89717 -18.21601 -17.11706 -16.78465 -15.82271 -15.46776 -14.93425 -14.61688 -14.17164 -13.99837 -13.91358 -13.56883 -13.40837 -13.33956 -13.10096 -12.72319 -12.37055 -12.33042 -12.22441 -11.79766 -11.74599 -11.31492 -11.23471 -11.12608 -11.00884 -10.93242 -10.77230 -10.71137 -10.66317 -10.62071 -10.48788 -9.97374 -9.82254 -9.72682 -9.37258 -8.99544 -8.77030 -8.53942 -6.04727 -4.01997 2.80051 3.31332 3.39142 3.41474 3.43583 4.25520 4.31361 4.45378 4.50988 4.91261 4.98764 5.00932 5.16512 5.25823 5.28011 5.30517 5.38347 5.41684 5.43968 5.53088 5.55293 5.60146 5.63705 5.70849 5.75552 5.85445 5.86003 6.00847 6.05200 6.10817 6.12147 6.18143 6.19927 6.27550 6.31552 6.50136 6.58929 6.71666 6.90785 7.00875 7.04591 7.20004 7.36483 7.70491 7.80178 8.41376 8.52622 8.99252 9.58106 11.08032 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037251 B = 0.003201 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.479624 B = 8745.507757 C = 9021.517065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.720 5.720 15 C 0.513 3.487 16 O -0.547 6.547 17 C -0.114 4.114 18 H 0.097 0.903 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.071 4.071 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.102 4.102 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.399 0.601 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 3.850 24.080 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.371 5.371 15 C 0.299 3.701 16 O -0.425 6.425 17 C -0.136 4.136 18 H 0.115 0.885 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.072 4.072 22 C -0.195 4.195 23 C -0.196 4.196 24 C -0.140 4.140 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.160 3.124 23.947 24.151 hybrid contribution 0.242 -0.503 -0.422 0.700 sum 0.082 2.621 23.525 23.671 Atomic orbital electron populations 1.21772 0.94832 1.01232 1.00746 1.20683 0.95788 0.95906 0.93948 1.21768 1.00417 0.95597 1.00743 1.19592 0.96274 0.95490 0.92648 1.21082 1.31807 1.13338 0.88623 0.90397 1.24996 0.95707 0.96748 0.95986 1.69900 1.45949 1.40601 0.97882 0.86859 0.81342 0.83926 0.77648 1.20374 1.21503 1.18998 1.21625 0.98817 0.96008 0.83349 1.46179 1.53309 1.31868 1.05787 1.20524 0.80319 0.84499 0.84730 1.90668 1.38546 1.26482 1.86807 1.22156 1.01564 0.96310 0.93540 0.88456 1.22475 1.01613 0.94026 0.97025 1.22482 1.01620 0.96663 0.94346 1.21236 0.95709 0.95019 0.95188 1.21903 0.94842 1.01497 1.01299 1.21916 0.99396 1.01490 0.96790 1.22250 1.02548 0.96925 0.92307 0.95022 0.90889 0.93442 0.93443 0.90902 0.95001 0.96387 0.96836 0.92796 0.91954 0.91956 0.76568 0.90898 0.90845 0.91343 0.91279 0.92868 0.92667 0.92463 0.92602 0.92702 0.92817 0.91503 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 2 C -0.06 -1.14 0.54 -154.51 -0.08 -1.23 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.65 8.20 -34.44 -0.28 -13.93 16 6 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 9 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.13 2.11 4.56 -4.04 -0.02 2.09 16 14 N -0.72 -9.96 4.92 -60.29 -0.30 -10.26 16 15 C 0.51 7.31 7.14 -10.98 -0.08 7.23 16 16 O -0.55 -9.95 15.44 5.56 0.09 -9.87 16 17 C -0.11 -1.18 3.25 -90.11 -0.29 -1.47 16 18 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.11 -0.99 6.29 -24.74 -0.16 -1.15 16 20 C -0.11 -0.86 5.90 -25.07 -0.15 -1.00 16 21 C -0.07 -0.59 0.94 -153.28 -0.14 -0.73 16 22 C -0.14 -1.13 8.15 37.16 0.30 -0.83 16 23 C -0.14 -0.97 8.16 37.16 0.30 -0.67 16 24 C -0.10 -1.05 5.49 -25.50 -0.14 -1.19 16 25 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 26 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 30 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 31 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.67 6.16 -40.82 -0.25 4.42 16 37 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.48 7.84 -51.93 -0.41 0.08 16 40 H 0.07 0.47 7.85 -51.93 -0.41 0.06 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 48 H 0.09 1.08 6.41 -51.93 -0.33 0.75 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -30.65 363.49 -7.89 -38.53 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.93 Total: 0.71 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.32 Total: -15.04 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.48 Total: -36.71 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.65 -7.89 -38.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345890744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.261 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds