Wall clock time and date at job start Tue Mar 31 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00157 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00386 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 89.99562 * 9 7 5 11 11 H 1.48494 * 109.47201 * 210.00305 * 9 7 5 12 12 H 1.48506 * 109.46710 * 330.00066 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 H 1.08996 * 110.66801 * 298.22457 * 17 15 14 19 19 C 1.54896 * 110.75436 * 61.45563 * 17 15 14 20 20 C 1.54258 * 104.19648 * 156.26019 * 19 17 15 21 21 C 1.53882 * 106.59802 * 336.38875 * 20 19 17 22 22 C 1.53007 * 110.02950 * 119.28575 * 21 20 19 23 23 C 1.52990 * 110.03253 * 240.66629 * 21 20 19 24 24 C 1.54261 * 106.59746 * 0.02562 * 21 20 19 25 25 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 26 26 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 27 27 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 30 30 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 31 31 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 33 33 H 0.96996 * 120.00642 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 35 35 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 36 36 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 37 37 H 1.09000 * 110.48524 * 274.94099 * 19 17 15 38 38 H 1.08998 * 110.48761 * 37.44692 * 19 17 15 39 39 H 1.09003 * 110.03393 * 95.67371 * 20 19 17 40 40 H 1.08998 * 110.03397 * 217.10423 * 20 19 17 41 41 H 1.08995 * 109.47023 * 61.45255 * 22 21 20 42 42 H 1.09000 * 109.46970 * 181.45632 * 22 21 20 43 43 H 1.08998 * 109.46739 * 301.45036 * 22 21 20 44 44 H 1.09003 * 109.47338 * 58.54695 * 23 21 20 45 45 H 1.09007 * 109.47292 * 178.54841 * 23 21 20 46 46 H 1.08999 * 109.47611 * 298.54557 * 23 21 20 47 47 H 1.09004 * 110.48514 * 264.93222 * 24 21 20 48 48 H 1.09002 * 110.49030 * 142.28625 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9451 -2.0003 -3.9035 10 1 2.0866 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5702 -1.4804 3.7807 17 6 1.3655 0.2124 4.9000 18 1 1.7430 1.2341 4.9400 19 6 -0.1828 0.1972 4.9425 20 6 -0.5219 0.3656 6.4379 21 6 0.7072 -0.1222 7.2249 22 6 1.2722 1.0184 8.0742 23 6 0.3220 -1.3010 8.1208 24 6 1.7504 -0.5693 6.1802 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 3.1300 -0.7208 -1.2496 32 1 1.6767 -1.7489 -1.2493 33 1 1.6673 -0.1927 -5.6868 34 1 3.1301 -0.7216 1.2490 35 1 1.6768 -1.7489 1.2492 36 1 0.9939 0.7579 2.3564 37 1 -0.5885 1.0269 4.3636 38 1 -0.5655 -0.7518 4.5670 39 1 -0.7158 1.4147 6.6610 40 1 -1.3926 -0.2381 6.6937 41 1 0.5196 1.3438 8.7923 42 1 2.1569 0.6705 8.6074 43 1 1.5425 1.8532 7.4276 44 1 -0.0802 -2.1073 7.5074 45 1 1.2040 -1.6555 8.6543 46 1 -0.4324 -0.9801 8.8392 47 1 1.6803 -1.6431 6.0064 48 1 2.7554 -0.2992 6.5047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345890745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:00 Heat of formation + Delta-G solvation = -83.125594 kcal Electronic energy + Delta-G solvation = -22883.269439 eV Core-core repulsion = 19743.256638 eV Total energy + Delta-G solvation = -3140.012800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27790 -38.52061 -37.06436 -33.68715 -32.61241 -31.92943 -29.18194 -27.85081 -27.56846 -26.56390 -26.55552 -24.66257 -22.69393 -21.64935 -19.84784 -18.93834 -18.21415 -17.07246 -16.75275 -15.85460 -15.56228 -14.87605 -14.54486 -14.13152 -14.08418 -13.72399 -13.62828 -13.54551 -13.34104 -13.21752 -12.72041 -12.38964 -12.29124 -12.25864 -11.83972 -11.74235 -11.28137 -11.23684 -11.12234 -11.00940 -10.91015 -10.79347 -10.76458 -10.68081 -10.62065 -10.48552 -9.97264 -9.82369 -9.72673 -9.36946 -8.99470 -8.76633 -8.53817 -6.04636 -4.01909 2.80257 3.31390 3.39229 3.41692 3.43685 4.23858 4.30161 4.45474 4.48841 4.88708 4.99471 5.02253 5.13644 5.24374 5.27454 5.28104 5.37466 5.40837 5.43417 5.52994 5.53869 5.59098 5.63827 5.70487 5.75216 5.81554 5.84229 5.99890 6.07260 6.10987 6.12351 6.14570 6.20226 6.23111 6.31685 6.50024 6.59051 6.71622 6.90877 7.00981 7.04680 7.20122 7.36634 7.70680 7.80308 8.41655 8.52700 8.99360 9.58157 11.08105 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037828 B = 0.003178 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.010278 B = 8807.169321 C = 9090.014610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.720 5.720 15 C 0.514 3.486 16 O -0.547 6.547 17 C -0.115 4.115 18 H 0.099 0.901 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.073 4.073 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.093 4.093 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.399 0.601 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.079 0.921 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 2.357 24.169 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.372 5.372 15 C 0.300 3.700 16 O -0.425 6.425 17 C -0.137 4.137 18 H 0.117 0.883 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.073 4.073 22 C -0.196 4.196 23 C -0.196 4.196 24 C -0.131 4.131 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.805 1.639 24.038 24.257 hybrid contribution 0.333 -0.424 -0.423 0.685 sum -2.472 1.216 23.615 23.775 Atomic orbital electron populations 1.21773 0.94816 1.01218 1.00744 1.20686 0.95802 0.95892 0.93952 1.21767 1.00433 0.95613 1.00740 1.19591 0.96276 0.95488 0.92645 1.21082 1.31808 1.13336 0.88625 0.90397 1.24999 0.95705 0.96752 0.95985 1.69901 1.45978 1.40577 0.97881 0.86858 0.81344 0.83921 0.77651 1.20372 1.21502 1.18995 1.21620 0.98830 0.96006 0.83353 1.46191 1.53271 1.31911 1.05802 1.20509 0.80242 0.84597 0.84643 1.90680 1.38283 1.26621 1.86937 1.22297 0.97173 1.00667 0.93523 0.88252 1.22338 0.93191 1.02609 0.97042 1.22274 0.97457 1.01329 0.94102 1.21212 0.95162 0.95593 0.95328 1.21920 1.00605 0.97714 0.99322 1.21904 1.01120 0.97419 0.99148 1.22319 0.98214 1.00777 0.91783 0.95011 0.90899 0.93449 0.93432 0.90896 0.95017 0.96386 0.96835 0.92797 0.91945 0.91967 0.76574 0.90968 0.91038 0.91448 0.91456 0.92780 0.92695 0.92547 0.92494 0.92681 0.92795 0.90210 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.06 -1.15 0.54 -154.50 -0.08 -1.23 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.65 8.20 -34.44 -0.28 -13.93 16 6 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 9 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.13 2.11 4.56 -4.04 -0.02 2.09 16 14 N -0.72 -9.98 4.90 -60.30 -0.30 -10.27 16 15 C 0.51 7.33 7.15 -10.98 -0.08 7.26 16 16 O -0.55 -10.00 15.79 5.55 0.09 -9.92 16 17 C -0.12 -1.19 3.29 -89.79 -0.30 -1.48 16 18 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.11 -0.99 6.22 -25.07 -0.16 -1.15 16 20 C -0.11 -0.86 6.11 -25.61 -0.16 -1.02 16 21 C -0.07 -0.58 0.94 -153.39 -0.14 -0.72 16 22 C -0.14 -0.96 8.14 37.16 0.30 -0.66 16 23 C -0.14 -1.04 8.16 37.15 0.30 -0.74 16 24 C -0.09 -0.95 4.93 -25.09 -0.12 -1.07 16 25 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 26 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 30 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 31 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.68 6.16 -40.82 -0.25 4.43 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 39 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 40 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 41 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.97 7.24 -51.93 -0.38 0.59 16 48 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -30.70 364.07 -7.90 -38.61 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.97 Total: 0.48 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.32 Total: -14.82 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.48 Total: -36.74 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.70 -7.90 -38.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345890745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.520 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds