Wall clock time and date at job start Tue Mar 31 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 C 1.52991 * 109.47531 * 239.99455 * 2 1 3 5 5 C 1.50704 * 109.46865 * 60.00095 * 4 2 1 6 6 H 1.08002 * 120.00183 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99869 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00285 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99778 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47461 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47239 * 120.00084 * 9 7 5 12 12 H 1.48499 * 109.47133 * 239.99803 * 9 7 5 13 13 C 1.53007 * 109.46954 * 119.99729 * 2 1 3 14 14 N 1.46506 * 109.47055 * 300.00320 * 13 2 1 15 15 C 1.34770 * 120.00245 * 180.02562 * 14 13 2 16 16 O 1.21287 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00383 * 179.97438 * 15 14 13 18 18 H 1.08999 * 110.01932 * 27.33904 * 17 15 14 19 19 C 1.54264 * 110.03608 * 148.73368 * 17 15 14 20 20 C 1.54884 * 104.20090 * 142.94251 * 19 17 15 21 21 C 1.54890 * 102.74579 * 322.05802 * 20 19 17 22 22 C 1.53876 * 110.03190 * 265.94687 * 17 15 14 23 23 C 1.53001 * 110.03340 * 359.95434 * 22 17 15 24 24 C 1.52999 * 110.03311 * 121.37912 * 22 17 15 25 25 H 1.08997 * 109.47492 * 300.00396 * 1 2 3 26 26 H 1.09001 * 109.46837 * 60.00320 * 1 2 3 27 27 H 1.09004 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46537 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47258 * 299.99285 * 3 2 1 30 30 H 1.08998 * 109.47346 * 60.00066 * 3 2 1 31 31 H 1.08997 * 109.47532 * 180.02562 * 4 2 1 32 32 H 1.09003 * 109.47546 * 300.00524 * 4 2 1 33 33 H 0.97004 * 120.00387 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47005 * 180.02562 * 13 2 1 35 35 H 1.08994 * 109.47011 * 59.99766 * 13 2 1 36 36 H 0.97003 * 119.99759 * 359.97438 * 14 13 2 37 37 H 1.09002 * 110.48314 * 261.62310 * 19 17 15 38 38 H 1.08999 * 110.48674 * 24.12885 * 19 17 15 39 39 H 1.09003 * 110.75715 * 80.36909 * 20 19 17 40 40 H 1.08995 * 110.75927 * 203.74361 * 20 19 17 41 41 H 1.09005 * 110.48563 * 156.62484 * 21 20 19 42 42 H 1.09002 * 110.48512 * 279.12423 * 21 20 19 43 43 H 1.08996 * 109.47404 * 58.59420 * 23 22 17 44 44 H 1.09001 * 109.47653 * 178.60244 * 23 22 17 45 45 H 1.09005 * 109.46921 * 298.60273 * 23 22 17 46 46 H 1.09001 * 109.47339 * 60.00079 * 24 22 17 47 47 H 1.09001 * 109.47793 * 180.02562 * 24 22 17 48 48 H 1.09000 * 109.47344 * 300.00084 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8674 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8525 9 14 1.2484 0.3985 -5.2571 10 1 0.4238 1.5656 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4228 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4455 15 6 1.8774 -0.4906 3.6696 16 8 2.5747 -1.4767 3.7810 17 6 1.3755 0.2201 4.9000 18 1 0.4382 0.7309 4.6796 19 6 1.1695 -0.7905 6.0471 20 6 1.6053 -0.0181 7.3169 21 6 2.8203 0.8024 6.8176 22 6 2.4256 1.2332 5.3887 23 6 3.6510 1.2009 4.4731 24 6 1.8252 2.6403 5.4122 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7217 -1.2488 32 1 1.6767 -1.7490 -1.2491 33 1 2.8601 -1.8837 -4.7335 34 1 3.1299 -0.7208 1.2496 35 1 1.6766 -1.7488 1.2494 36 1 0.9941 0.7583 2.3564 37 1 0.1208 -1.0793 6.1173 38 1 1.7970 -1.6693 5.8986 39 1 0.8084 0.6416 7.6602 40 1 1.9034 -0.7086 8.1058 41 1 2.9765 1.6763 7.4502 42 1 3.7167 0.1826 6.7970 43 1 3.3479 1.4325 3.4521 44 1 4.3779 1.9387 4.8127 45 1 4.1002 0.2081 4.5023 46 1 0.9687 2.6587 6.0861 47 1 2.5762 3.3501 5.7590 48 1 1.5031 2.9146 4.4077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345892748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:06 Heat of formation + Delta-G solvation = -81.705893 kcal Electronic energy + Delta-G solvation = -23445.498143 eV Core-core repulsion = 20305.546905 eV Total energy + Delta-G solvation = -3139.951238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58106 -38.14624 -36.78374 -33.59155 -32.38072 -32.02746 -29.55733 -27.48523 -27.09747 -26.51431 -26.13562 -24.70594 -22.94107 -21.17655 -20.34462 -19.06526 -17.92958 -16.82739 -16.34632 -15.74087 -15.56869 -14.82402 -14.65634 -14.44159 -13.86631 -13.68980 -13.61535 -13.20639 -13.06994 -12.85723 -12.76888 -12.21926 -12.08894 -11.99787 -11.83391 -11.52268 -11.22955 -11.12821 -11.02707 -10.90067 -10.83562 -10.72511 -10.68908 -10.65305 -10.58909 -10.40079 -10.24035 -9.87427 -9.60710 -9.13077 -8.90892 -8.65237 -8.36627 -6.00369 -4.01621 2.87949 3.29613 3.37694 3.39836 3.50880 4.29368 4.40450 4.44739 4.57435 5.01689 5.12956 5.13141 5.19887 5.24428 5.33120 5.35247 5.48758 5.51837 5.54088 5.63413 5.68419 5.74466 5.75019 5.75887 5.83399 5.91783 5.96172 6.09790 6.14848 6.18220 6.23644 6.26333 6.27757 6.34124 6.40174 6.59840 6.62759 6.80124 7.06561 7.07176 7.13509 7.64143 7.76313 7.82209 7.98580 8.40137 8.52139 9.03474 9.61589 11.11126 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035558 B = 0.003480 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.264057 B = 8044.768483 C = 8243.517270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.723 5.723 15 C 0.520 3.480 16 O -0.547 6.547 17 C -0.107 4.107 18 H 0.087 0.913 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.052 4.052 23 C -0.155 4.155 24 C -0.139 4.139 25 H 0.028 0.972 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 7.427 20.453 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.374 5.374 15 C 0.307 3.693 16 O -0.425 6.425 17 C -0.129 4.129 18 H 0.106 0.894 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.053 4.053 23 C -0.212 4.212 24 C -0.197 4.197 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.232 0.768 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.539 6.601 20.369 21.562 hybrid contribution -0.576 0.789 -1.146 1.506 sum -3.115 7.390 19.222 20.828 Atomic orbital electron populations 1.21756 0.95330 1.01123 1.00182 1.20894 0.95425 0.95821 0.95124 1.21753 1.00486 0.95931 1.00180 1.19089 0.96324 0.95217 0.89530 1.21225 1.31100 1.12016 0.90518 0.92215 1.25017 0.95333 0.95081 0.99097 1.69974 1.37045 1.23035 1.23325 0.86598 0.78605 0.79683 0.83468 1.19805 1.21131 1.21137 1.21599 0.98800 0.95985 0.83101 1.46298 1.53288 1.31852 1.05940 1.20357 0.80192 0.84223 0.84577 1.90665 1.38331 1.26721 1.86737 1.22101 0.99548 0.97115 0.94124 0.89441 1.22352 1.01739 0.98376 0.92635 1.22459 0.97721 0.98547 0.97219 1.22500 0.98427 0.99602 0.94593 1.21045 0.94552 0.94135 0.95550 1.22129 0.97004 1.02778 0.99283 1.21938 1.00675 0.95089 1.01958 0.95282 0.91468 0.93400 0.93417 0.91476 0.95281 0.96388 0.96384 0.93097 0.91981 0.91969 0.76830 0.91597 0.89564 0.91611 0.91432 0.91555 0.91206 0.92020 0.92550 0.91405 0.92442 0.92354 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.53 7.65 -34.44 -0.26 -13.80 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.27 4.56 -4.04 -0.02 2.25 16 14 N -0.72 -10.44 4.51 -60.29 -0.27 -10.71 16 15 C 0.52 7.65 4.71 -10.99 -0.05 7.60 16 16 O -0.55 -10.12 14.90 5.55 0.08 -10.04 16 17 C -0.11 -1.18 2.94 -90.66 -0.27 -1.45 16 18 H 0.09 0.82 7.67 -51.93 -0.40 0.43 16 19 C -0.11 -1.19 6.31 -25.08 -0.16 -1.35 16 20 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 21 C -0.11 -1.02 5.90 -25.02 -0.15 -1.17 16 22 C -0.05 -0.52 0.94 -153.34 -0.14 -0.66 16 23 C -0.15 -1.81 7.23 37.16 0.27 -1.54 16 24 C -0.14 -1.13 8.15 37.16 0.30 -0.83 16 25 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 26 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.40 4.92 6.16 -40.82 -0.25 4.66 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.11 6.89 -51.93 -0.36 0.75 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 42 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 43 H 0.06 0.78 7.08 -51.93 -0.37 0.41 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.94 6.94 -51.93 -0.36 0.58 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -30.12 362.20 -8.24 -38.36 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.88 Total: 1.67 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.35 Total: -15.19 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.46 Total: -36.42 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.12 -8.24 -38.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345892748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.351 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds