Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46746 * 2 1 4 4 C 1.52996 * 109.46957 * 240.00459 * 2 1 3 5 5 C 1.50697 * 109.47562 * 59.99517 * 4 2 1 6 6 H 1.08002 * 119.99508 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00175 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99971 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47229 * 60.00154 * 9 7 5 11 11 H 1.48501 * 109.47152 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47291 * 300.00089 * 9 7 5 13 13 C 1.52998 * 109.47504 * 120.00042 * 2 1 3 14 14 N 1.46504 * 109.46801 * 300.00287 * 13 2 1 15 15 C 1.34777 * 119.99807 * 179.97438 * 14 13 2 16 16 O 1.21285 * 119.99970 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00479 * 179.97438 * 15 14 13 18 18 H 1.09002 * 110.05024 * 332.97464 * 17 15 14 19 19 C 1.54265 * 110.03471 * 211.56242 * 17 15 14 20 20 C 1.54889 * 104.19478 * 217.10231 * 19 17 15 21 21 C 1.54887 * 102.91491 * 37.84833 * 20 19 17 22 22 C 1.53873 * 110.03244 * 94.39054 * 17 15 14 23 23 C 1.53001 * 110.03080 * 238.57368 * 22 17 15 24 24 C 1.52994 * 110.03220 * 359.95402 * 22 17 15 25 25 H 1.09006 * 109.47295 * 299.99482 * 1 2 3 26 26 H 1.08993 * 109.47189 * 59.99968 * 1 2 3 27 27 H 1.09007 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46785 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47303 * 299.99962 * 3 2 1 30 30 H 1.08997 * 109.46787 * 60.00400 * 3 2 1 31 31 H 1.09002 * 109.46998 * 179.97438 * 4 2 1 32 32 H 1.09007 * 109.46877 * 299.99476 * 4 2 1 33 33 H 0.97004 * 120.00026 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47549 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.46730 * 59.99495 * 13 2 1 36 36 H 0.96996 * 120.00400 * 359.97438 * 14 13 2 37 37 H 1.09002 * 110.49076 * 98.42674 * 19 17 15 38 38 H 1.09000 * 110.48224 * 335.77792 * 19 17 15 39 39 H 1.08997 * 110.75962 * 156.25539 * 20 19 17 40 40 H 1.09005 * 110.75512 * 279.44554 * 20 19 17 41 41 H 1.08999 * 110.48856 * 80.83107 * 21 20 19 42 42 H 1.08999 * 110.48713 * 203.47393 * 21 20 19 43 43 H 1.08998 * 109.47206 * 59.99816 * 23 22 17 44 44 H 1.09000 * 109.47182 * 180.02562 * 23 22 17 45 45 H 1.09005 * 109.47123 * 300.00144 * 23 22 17 46 46 H 1.08995 * 109.47135 * 61.23560 * 24 22 17 47 47 H 1.09003 * 109.46964 * 181.23543 * 24 22 17 48 48 H 1.09000 * 109.47558 * 301.23133 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3805 7 6 1.8702 -0.4821 -3.7320 8 7 2.6255 -1.5519 -3.8527 9 14 1.2480 0.3989 -5.2571 10 1 1.7440 1.7986 -5.2573 11 1 1.7419 -0.3019 -6.4697 12 1 -0.2369 0.4000 -5.2570 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5743 -1.4774 3.7807 17 6 1.3751 0.2192 4.9000 18 1 1.2012 1.2723 4.6786 19 6 2.4004 0.0822 6.0445 20 6 1.5309 -0.0731 7.3168 21 6 0.3514 -0.9484 6.8253 22 6 0.0742 -0.4374 5.3942 23 6 -1.0561 0.5934 5.4202 24 6 -0.3030 -1.6054 4.4809 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7207 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 2.8592 -1.8837 -4.7338 34 1 3.1301 -0.7208 1.2494 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 3.0188 0.9773 6.1120 38 1 3.0213 -0.8013 5.8965 39 1 2.0867 -0.5810 8.1049 40 1 1.1741 0.8975 7.6617 41 1 0.6391 -1.9995 6.8044 42 1 -0.5220 -0.8036 7.4612 43 1 -1.2124 0.9866 4.4157 44 1 -1.9724 0.1191 5.7717 45 1 -0.7887 1.4090 6.0921 46 1 0.4872 -2.3557 4.5053 47 1 -1.2366 -2.0497 4.8262 48 1 -0.4287 -1.2431 3.4606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345892749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -81.679410 kcal Electronic energy + Delta-G solvation = -23442.573148 eV Core-core repulsion = 20302.623059 eV Total energy + Delta-G solvation = -3139.950089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57713 -38.14405 -36.78217 -33.58924 -32.37863 -32.02726 -29.56134 -27.48038 -27.09551 -26.51362 -26.13699 -24.70293 -22.93678 -21.17542 -20.34487 -19.06541 -17.92875 -16.82856 -16.34112 -15.73615 -15.56488 -14.82425 -14.65594 -14.44759 -13.86506 -13.68984 -13.61540 -13.20270 -13.07424 -12.85741 -12.76449 -12.22064 -12.07638 -11.99570 -11.83481 -11.52168 -11.23650 -11.12606 -11.00439 -10.90610 -10.86391 -10.72231 -10.68661 -10.63766 -10.58387 -10.39616 -10.26581 -9.86859 -9.60792 -9.12667 -8.92634 -8.65202 -8.35805 -5.99892 -4.01339 2.87917 3.31727 3.37217 3.38081 3.50885 4.29339 4.40451 4.44936 4.57498 5.01920 5.12846 5.13128 5.19781 5.24575 5.33061 5.35476 5.48604 5.51908 5.54161 5.63459 5.68579 5.74474 5.75044 5.75967 5.83495 5.91554 5.96185 6.09830 6.14893 6.18227 6.23642 6.26222 6.27829 6.34196 6.40206 6.59915 6.62722 6.80165 7.06550 7.07282 7.13538 7.63831 7.76581 7.82243 7.98742 8.40341 8.52161 9.03290 9.61730 11.11542 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.003477 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.955468 B = 8050.188677 C = 8247.122792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.723 5.723 15 C 0.520 3.480 16 O -0.547 6.547 17 C -0.107 4.107 18 H 0.087 0.913 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.052 4.052 23 C -0.140 4.140 24 C -0.155 4.155 25 H 0.028 0.972 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 5.400 20.433 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.374 5.374 15 C 0.307 3.693 16 O -0.424 6.424 17 C -0.129 4.129 18 H 0.106 0.894 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.151 4.151 22 C -0.053 4.053 23 C -0.197 4.197 24 C -0.212 4.212 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.232 0.768 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.337 4.567 20.343 21.522 hybrid contribution -0.568 0.829 -1.134 1.515 sum -5.905 5.396 19.209 20.808 Atomic orbital electron populations 1.21754 0.95320 1.01099 1.00169 1.20897 0.95422 0.95822 0.95133 1.21756 1.00525 0.95936 1.00171 1.19080 0.96317 0.95193 0.89491 1.21148 1.31262 1.12063 0.90550 0.92332 1.25011 0.95311 0.95077 0.99071 1.69955 1.36924 1.22976 1.23549 0.86711 0.79139 0.79773 0.82679 1.20324 1.21394 1.20331 1.21597 0.98813 0.95972 0.83097 1.46297 1.53215 1.31926 1.05940 1.20357 0.79740 0.84674 0.84574 1.90664 1.38480 1.26565 1.86738 1.22097 0.96532 1.00124 0.94120 0.89436 1.22354 0.97001 1.03097 0.92636 1.22458 0.96544 0.99740 0.97220 1.22516 0.98144 0.99871 0.94580 1.21064 0.93141 0.95565 0.95522 1.21945 0.97494 0.98295 1.01946 1.22126 1.01846 0.97939 0.99280 0.95283 0.91484 0.93418 0.93399 0.91480 0.95277 0.96396 0.96392 0.92977 0.91971 0.91976 0.76831 0.91571 0.89569 0.91459 0.91638 0.91217 0.91502 0.92430 0.92357 0.92452 0.91388 0.92555 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 5 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.13 2.28 4.57 -4.04 -0.02 2.26 16 14 N -0.72 -10.44 4.53 -60.29 -0.27 -10.72 16 15 C 0.52 7.65 4.71 -10.99 -0.05 7.60 16 16 O -0.55 -10.12 14.88 5.55 0.08 -10.04 16 17 C -0.11 -1.18 2.94 -90.66 -0.27 -1.45 16 18 H 0.09 0.82 7.67 -51.93 -0.40 0.43 16 19 C -0.11 -1.19 6.32 -25.07 -0.16 -1.35 16 20 C -0.12 -1.03 6.90 -24.74 -0.17 -1.20 16 21 C -0.11 -1.02 5.92 -24.97 -0.15 -1.17 16 22 C -0.05 -0.52 0.94 -153.29 -0.14 -0.66 16 23 C -0.14 -1.13 8.13 37.16 0.30 -0.83 16 24 C -0.15 -1.81 7.22 37.15 0.27 -1.54 16 25 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 27 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 4.92 6.16 -40.82 -0.25 4.67 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.11 6.90 -51.93 -0.36 0.75 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 42 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.95 6.92 -51.93 -0.36 0.59 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.78 7.11 -51.93 -0.37 0.41 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -30.08 362.23 -8.24 -38.32 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.88 Total: 1.75 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -0.35 Total: -15.21 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.46 Total: -36.46 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.08 -8.24 -38.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345892749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.355 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds