Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46746 * 2 1 4 4 C 1.52996 * 109.46957 * 240.00459 * 2 1 3 5 5 C 1.50697 * 109.47562 * 59.99517 * 4 2 1 6 6 H 1.08002 * 119.99508 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00175 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99971 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47229 * 60.00154 * 9 7 5 11 11 H 1.48501 * 109.47152 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47291 * 300.00089 * 9 7 5 13 13 C 1.52998 * 109.47504 * 120.00042 * 2 1 3 14 14 N 1.46504 * 109.46801 * 300.00287 * 13 2 1 15 15 C 1.34777 * 119.99807 * 179.97438 * 14 13 2 16 16 O 1.21285 * 119.99970 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00479 * 179.97438 * 15 14 13 18 18 H 1.09002 * 110.05024 * 332.97464 * 17 15 14 19 19 C 1.54265 * 110.03471 * 211.56242 * 17 15 14 20 20 C 1.54889 * 104.19478 * 217.10231 * 19 17 15 21 21 C 1.54887 * 102.91491 * 37.84833 * 20 19 17 22 22 C 1.53873 * 110.03244 * 94.39054 * 17 15 14 23 23 C 1.53001 * 110.03080 * 238.57368 * 22 17 15 24 24 C 1.52994 * 110.03220 * 359.95402 * 22 17 15 25 25 H 1.09006 * 109.47295 * 299.99482 * 1 2 3 26 26 H 1.08993 * 109.47189 * 59.99968 * 1 2 3 27 27 H 1.09007 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46785 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47303 * 299.99962 * 3 2 1 30 30 H 1.08997 * 109.46787 * 60.00400 * 3 2 1 31 31 H 1.09002 * 109.46998 * 179.97438 * 4 2 1 32 32 H 1.09007 * 109.46877 * 299.99476 * 4 2 1 33 33 H 0.97004 * 120.00026 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47549 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.46730 * 59.99495 * 13 2 1 36 36 H 0.96996 * 120.00400 * 359.97438 * 14 13 2 37 37 H 1.09002 * 110.49076 * 98.42674 * 19 17 15 38 38 H 1.09000 * 110.48224 * 335.77792 * 19 17 15 39 39 H 1.08997 * 110.75962 * 156.25539 * 20 19 17 40 40 H 1.09005 * 110.75512 * 279.44554 * 20 19 17 41 41 H 1.08999 * 110.48856 * 80.83107 * 21 20 19 42 42 H 1.08999 * 110.48713 * 203.47393 * 21 20 19 43 43 H 1.08998 * 109.47206 * 59.99816 * 23 22 17 44 44 H 1.09000 * 109.47182 * 180.02562 * 23 22 17 45 45 H 1.09005 * 109.47123 * 300.00144 * 23 22 17 46 46 H 1.08995 * 109.47135 * 61.23560 * 24 22 17 47 47 H 1.09003 * 109.46964 * 181.23543 * 24 22 17 48 48 H 1.09000 * 109.47558 * 301.23133 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3805 7 6 1.8702 -0.4821 -3.7320 8 7 2.6255 -1.5519 -3.8527 9 14 1.2480 0.3989 -5.2571 10 1 1.7440 1.7986 -5.2573 11 1 1.7419 -0.3019 -6.4697 12 1 -0.2369 0.4000 -5.2570 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5743 -1.4774 3.7807 17 6 1.3751 0.2192 4.9000 18 1 1.2012 1.2723 4.6786 19 6 2.4004 0.0822 6.0445 20 6 1.5309 -0.0731 7.3168 21 6 0.3514 -0.9484 6.8253 22 6 0.0742 -0.4374 5.3942 23 6 -1.0561 0.5934 5.4202 24 6 -0.3030 -1.6054 4.4809 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7207 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 2.8592 -1.8837 -4.7338 34 1 3.1301 -0.7208 1.2494 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 3.0188 0.9773 6.1120 38 1 3.0213 -0.8013 5.8965 39 1 2.0867 -0.5810 8.1049 40 1 1.1741 0.8975 7.6617 41 1 0.6391 -1.9995 6.8044 42 1 -0.5220 -0.8036 7.4612 43 1 -1.2124 0.9866 4.4157 44 1 -1.9724 0.1191 5.7717 45 1 -0.7887 1.4090 6.0921 46 1 0.4872 -2.3557 4.5053 47 1 -1.2366 -2.0497 4.8262 48 1 -0.4287 -1.2431 3.4606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345892749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -98.558469 kcal Electronic energy + Delta-G solvation = -23443.305079 eV Core-core repulsion = 20302.623059 eV Total energy + Delta-G solvation = -3140.682020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64619 -39.37002 -38.15779 -35.23748 -33.94692 -33.08000 -30.52633 -29.03750 -28.22577 -27.96619 -27.51393 -25.66609 -24.73666 -22.22812 -21.30717 -20.26338 -19.27574 -18.36968 -17.94514 -16.84170 -16.71851 -16.42526 -15.97568 -15.60486 -15.15079 -15.00940 -14.63315 -14.44108 -14.34055 -14.06299 -13.94230 -13.82197 -13.51975 -12.92016 -12.83380 -12.76771 -12.71037 -12.58967 -12.33688 -12.32099 -12.23010 -12.00851 -11.92028 -11.71778 -11.55030 -11.51084 -11.40416 -11.33202 -11.10552 -10.89718 -10.61332 -10.51329 -10.01200 -8.14335 -6.22630 1.42269 1.44542 1.51757 1.70301 2.27847 2.45295 3.19941 3.50028 3.60256 3.73276 3.96624 4.07399 4.16775 4.22119 4.32559 4.41853 4.43526 4.48155 4.54343 4.68404 4.70916 4.75105 4.79247 4.80183 4.90056 4.95627 5.04584 5.05221 5.09211 5.11501 5.12149 5.20825 5.24049 5.35377 5.37298 5.40699 5.44875 5.49069 5.49702 5.53215 5.57009 5.58970 5.79446 5.89061 6.29580 6.65116 6.92525 7.34112 7.45333 8.98114 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.003477 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.955468 B = 8050.188677 C = 8247.122792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.143 3.857 14 N -0.711 5.711 15 C 0.519 3.481 16 O -0.590 6.590 17 C -0.102 4.102 18 H 0.116 0.884 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.050 4.050 23 C -0.136 4.136 24 C -0.153 4.153 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.070 0.930 31 H -0.016 1.016 32 H -0.017 1.017 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.411 0.589 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 8.558 22.144 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.363 5.363 15 C 0.307 3.693 16 O -0.471 6.471 17 C -0.124 4.124 18 H 0.134 0.866 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.051 4.051 23 C -0.193 4.193 24 C -0.210 4.210 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.249 0.751 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.088 0.912 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.603 7.764 22.073 24.603 hybrid contribution 0.174 -0.240 -1.626 1.653 sum -7.429 7.524 20.447 23.019 Atomic orbital electron populations 1.21679 0.93514 1.00849 1.01666 1.20699 0.96736 0.96298 0.92708 1.21689 0.99836 0.94593 1.01700 1.18961 0.94143 0.94117 0.92479 1.21567 1.30530 1.12124 0.91042 0.90834 1.25969 0.95634 0.95853 1.02792 1.70123 1.38808 1.24984 1.24166 0.85582 0.78990 0.78764 0.78212 1.19053 1.21746 1.19067 1.21149 0.97478 0.95225 0.84307 1.46091 1.53244 1.32085 1.04869 1.21128 0.78654 0.84090 0.85426 1.90654 1.40441 1.28686 1.87333 1.22212 0.97098 1.01120 0.91940 0.86574 1.22374 0.97123 1.02287 0.93709 1.22453 0.95731 1.00825 0.96130 1.22531 0.99285 0.98965 0.94398 1.21109 0.93284 0.95331 0.95361 1.21931 0.96685 0.98014 1.02693 1.22094 1.01393 0.98152 0.99371 0.91116 0.92508 0.94630 0.94574 0.92495 0.91073 0.99798 0.99815 0.93170 0.94045 0.94116 0.75069 0.90167 0.92796 0.91001 0.89284 0.93078 0.89395 0.92174 0.91576 0.90667 0.94644 0.91180 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 2 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.04 2.09 4.04 29.85 0.12 2.21 16 5 C -0.51 -27.69 7.65 25.60 0.20 -27.50 16 6 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 9 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.14 5.22 4.57 86.38 0.39 5.62 16 14 N -0.71 -19.77 4.53 -463.06 -2.10 -21.86 16 15 C 0.52 15.05 4.71 87.66 0.41 15.46 16 16 O -0.59 -22.80 14.88 -3.04 -0.05 -22.84 16 17 C -0.10 -2.03 2.94 -10.82 -0.03 -2.06 16 18 H 0.12 1.67 7.67 -2.39 -0.02 1.65 16 19 C -0.12 -2.27 6.32 31.67 0.20 -2.07 16 20 C -0.11 -1.60 6.90 31.88 0.22 -1.38 16 21 C -0.11 -1.78 5.92 31.74 0.19 -1.60 16 22 C -0.05 -0.87 0.94 -51.39 -0.05 -0.92 16 23 C -0.14 -1.61 8.13 71.98 0.59 -1.03 16 24 C -0.15 -3.46 7.22 71.98 0.52 -2.94 16 25 H 0.07 1.77 6.86 -2.38 -0.02 1.75 16 26 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 27 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 30 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 31 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 33 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 8.86 6.16 -92.71 -0.57 8.28 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.41 6.90 -2.39 -0.02 1.39 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.05 0.98 7.83 -2.39 -0.02 0.96 16 42 H 0.09 1.02 7.84 -2.39 -0.02 1.00 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.03 1.02 6.92 -2.39 -0.02 1.00 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.05 1.24 7.11 -2.39 -0.02 1.22 16 Total: -1.00 -69.52 362.23 4.86 -64.66 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.34 Total: 17.19 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.35 Total: -25.42 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -1.81 Total: -79.22 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -69.52 4.86 -64.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345892749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.895 kcal (2) G-P(sol) polarization free energy of solvation -69.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds