Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46825 * 2 1 4 4 C 1.53009 * 109.47211 * 302.08967 * 3 2 1 5 5 C 1.52995 * 109.47312 * 295.93531 * 4 3 2 6 6 C 1.52998 * 109.47383 * 62.09450 * 3 2 1 7 7 N 1.46492 * 109.47207 * 64.99818 * 6 3 2 8 8 C 1.46508 * 119.99938 * 270.00144 * 7 6 3 9 9 C 1.50693 * 109.47055 * 270.00020 * 8 7 6 10 10 H 1.08003 * 120.00126 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99989 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99779 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00137 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47192 * 59.99756 * 13 11 9 15 15 H 1.48498 * 109.47015 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47075 * 299.99954 * 13 11 9 17 17 C 1.34772 * 120.00182 * 90.00146 * 7 6 3 18 18 O 1.21284 * 119.99847 * 0.02562 * 17 7 6 19 19 C 1.50698 * 120.00245 * 180.02562 * 17 7 6 20 20 C 1.52998 * 109.47279 * 176.31794 * 19 17 7 21 21 C 1.53009 * 115.54812 * 279.70322 * 20 19 17 22 22 C 1.52998 * 117.50198 * 133.99593 * 20 19 17 23 23 C 1.52999 * 117.50468 * 65.37002 * 20 19 17 24 24 H 1.08991 * 109.47466 * 305.69136 * 1 2 3 25 25 H 1.09004 * 109.47123 * 65.69167 * 1 2 3 26 26 H 1.09003 * 109.47147 * 185.68632 * 1 2 3 27 27 H 1.08999 * 109.47356 * 240.00145 * 2 1 3 28 28 H 1.08995 * 109.47074 * 119.99964 * 2 1 3 29 29 H 1.09006 * 109.46844 * 182.09505 * 3 2 1 30 30 H 1.08999 * 109.46337 * 55.93537 * 4 3 2 31 31 H 1.08999 * 109.47207 * 175.93195 * 4 3 2 32 32 H 1.08999 * 109.47071 * 185.72699 * 5 4 3 33 33 H 1.09000 * 109.47462 * 305.72657 * 5 4 3 34 34 H 1.09004 * 109.47078 * 65.72667 * 5 4 3 35 35 H 1.09008 * 109.46712 * 304.99554 * 6 3 2 36 36 H 1.08998 * 109.47065 * 184.99896 * 6 3 2 37 37 H 1.08992 * 109.46943 * 30.00211 * 8 7 6 38 38 H 1.09001 * 109.46679 * 150.00070 * 8 7 6 39 39 H 0.97005 * 119.99821 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.47166 * 296.31606 * 19 17 7 41 41 H 1.08995 * 109.47194 * 56.31650 * 19 17 7 42 42 H 1.08999 * 109.47056 * 59.39661 * 21 20 19 43 43 H 1.09000 * 109.47106 * 179.39841 * 21 20 19 44 44 H 1.09002 * 109.46774 * 299.39727 * 21 20 19 45 45 H 1.08997 * 117.49759 * 0.02562 * 22 20 19 46 46 H 1.09005 * 117.49735 * 145.02091 * 22 20 19 47 47 H 1.08990 * 117.50475 * 214.98102 * 23 20 19 48 48 H 1.09005 * 117.49637 * 0.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4874 2.1788 -1.2222 5 6 2.0358 1.5345 -2.4968 6 6 1.5734 2.1484 1.2747 7 7 2.1982 1.5165 2.4394 8 6 1.5333 0.3961 3.1095 9 6 0.6316 0.9239 4.1955 10 1 0.5611 1.9875 4.3694 11 6 -0.1027 0.0490 4.9677 12 7 -0.0157 -1.2462 4.7569 13 14 -1.2199 0.7031 6.3143 14 1 -2.2422 1.5996 5.7173 15 1 -1.8929 -0.4326 6.9943 16 1 -0.4120 1.4625 7.3023 17 6 3.3845 1.9658 2.8944 18 8 3.9347 2.8936 2.3399 19 6 4.0275 1.3154 4.0921 20 6 5.3976 1.9487 4.3423 21 6 6.5336 1.4358 3.4547 22 6 5.7447 2.3365 5.7810 23 6 5.4307 3.4229 4.7504 24 1 -0.3634 0.5995 0.8346 25 1 -0.3633 0.4230 -0.9366 26 1 -0.3633 -1.0226 0.1018 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.1293 1.4428 -0.0376 30 1 0.3992 2.1163 -1.2226 31 1 1.7912 3.2249 -1.1842 32 1 1.7249 2.1195 -3.3624 33 1 3.1244 1.5053 -2.4499 34 1 1.6487 0.5194 -2.5863 35 1 0.4892 2.0707 1.3570 36 1 1.8603 3.1992 1.2339 37 1 0.9407 -0.1612 2.3841 38 1 2.2836 -0.2618 3.5481 39 1 -0.5320 -1.8618 5.3005 40 1 3.3948 1.4607 4.9678 41 1 4.1491 0.2486 3.9047 42 1 6.2880 1.6184 2.4086 43 1 7.4564 1.9578 3.7078 44 1 6.6655 0.3659 3.6156 45 1 4.9971 2.1400 6.5495 46 1 6.7825 2.2261 6.0956 47 1 6.2618 4.0272 4.3871 48 1 4.4763 3.9415 4.8412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345896982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -42.691584 kcal Electronic energy + Delta-G solvation = -23842.250538 eV Core-core repulsion = 20703.991088 eV Total energy + Delta-G solvation = -3138.259450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.52140 -37.80491 -36.48623 -34.43310 -32.44752 -30.84137 -29.66854 -28.42082 -27.52376 -26.47244 -23.96252 -22.90564 -22.82253 -22.03333 -19.46566 -18.54522 -17.70246 -16.68893 -16.07416 -15.59079 -15.13057 -14.90299 -14.65643 -14.37957 -14.08486 -13.65156 -13.24738 -12.90164 -12.70496 -12.56826 -12.30994 -12.16515 -11.98944 -11.74510 -11.48515 -11.43137 -11.28301 -11.14534 -11.11445 -10.97095 -10.85992 -10.68494 -10.60518 -10.23187 -10.11435 -9.99769 -9.91837 -9.81413 -9.66481 -9.36591 -8.78150 -8.49450 -7.58335 -6.16801 -4.23840 3.23702 3.29004 3.31441 3.56467 3.89916 4.27895 4.39320 5.06382 5.13944 5.16554 5.18425 5.22047 5.29569 5.30383 5.45856 5.52423 5.67574 5.72420 5.75964 5.93695 5.98359 6.00344 6.02623 6.08127 6.11907 6.15542 6.21235 6.22052 6.28015 6.31603 6.33805 6.42415 6.45339 6.47133 6.52266 6.60258 6.68573 6.70080 6.73813 6.87479 6.98004 7.25970 7.63396 7.79286 8.09833 8.45129 8.82668 9.16268 9.44139 10.89275 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.008391 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.822609 B = 3335.961436 C = 5790.889554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.119 4.119 5 C -0.148 4.148 6 C 0.123 3.877 7 N -0.595 5.595 8 C 0.230 3.770 9 C -0.537 4.537 10 H 0.058 0.942 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.517 3.483 18 O -0.569 6.569 19 C -0.099 4.099 20 C -0.106 4.106 21 C -0.108 4.108 22 C -0.184 4.184 23 C -0.152 4.152 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 2.787 -6.245 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.119 4.119 4 C -0.157 4.157 5 C -0.206 4.206 6 C 0.000 4.000 7 N -0.325 5.325 8 C 0.111 3.889 9 C -0.576 4.576 10 H 0.076 0.924 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.305 3.695 18 O -0.450 6.450 19 C -0.138 4.138 20 C -0.107 4.107 21 C -0.165 4.165 22 C -0.221 4.221 23 C -0.190 4.190 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.127 3.059 -6.462 9.416 hybrid contribution -0.844 0.133 0.915 1.252 sum 5.283 3.192 -5.546 8.298 Atomic orbital electron populations 1.21874 0.95986 1.01733 1.01459 1.21609 0.96232 0.96186 1.01741 1.21549 1.00276 0.95538 0.94500 1.21538 1.00777 0.99188 0.94151 1.21766 1.00892 1.00734 0.97190 1.21348 0.97888 0.96554 0.84252 1.48194 1.19968 1.35200 1.29143 1.19587 0.92931 0.83759 0.92657 1.21484 1.25627 0.93554 1.16951 0.92358 1.24910 0.96693 0.94734 0.97328 1.69907 1.41371 1.01450 1.40140 0.86631 0.80885 0.78437 0.81969 1.20197 1.21163 1.20160 1.20430 0.81018 0.83206 0.84805 1.90573 1.64015 1.30133 1.60285 1.21152 0.93837 1.00416 0.98417 1.21096 0.95712 0.98011 0.95864 1.21250 0.95649 1.00008 0.99633 1.23147 1.01717 1.04904 0.92370 1.22780 1.02574 0.91423 1.02174 0.91433 0.93455 0.93190 0.92986 0.90947 0.91504 0.91637 0.92359 0.93377 0.93044 0.92648 0.90431 0.91447 0.93348 0.94772 0.92535 0.88126 0.89178 0.91870 0.93131 0.92738 0.88898 0.89339 0.89497 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.46 37.16 0.31 -2.07 16 2 C -0.12 -1.90 4.84 -26.73 -0.13 -2.03 16 3 C -0.10 -1.58 2.38 -90.62 -0.22 -1.79 16 4 C -0.12 -1.58 5.13 -26.73 -0.14 -1.72 16 5 C -0.15 -1.74 9.50 37.15 0.35 -1.39 16 6 C 0.12 2.27 4.73 -4.05 -0.02 2.25 16 7 N -0.59 -12.27 2.28 -175.07 -0.40 -12.67 16 8 C 0.23 5.29 4.05 -5.19 -0.02 5.27 16 9 C -0.54 -13.71 9.39 -34.44 -0.32 -14.04 16 10 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 11 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 13 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 C 0.52 10.66 7.58 -10.99 -0.08 10.58 16 18 O -0.57 -12.50 14.70 5.55 0.08 -12.42 16 19 C -0.10 -1.84 4.29 -27.88 -0.12 -1.96 16 20 C -0.11 -1.73 1.62 -154.51 -0.25 -1.98 16 21 C -0.11 -1.58 9.69 37.16 0.36 -1.22 16 22 C -0.18 -2.64 9.89 -26.73 -0.26 -2.91 16 23 C -0.15 -2.42 8.95 -26.73 -0.24 -2.66 16 24 H 0.07 1.18 5.60 -51.93 -0.29 0.89 16 25 H 0.05 0.63 6.63 -51.93 -0.34 0.29 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.74 6.77 -51.93 -0.35 0.39 16 28 H 0.07 1.31 5.71 -51.93 -0.30 1.02 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.84 6.30 -51.93 -0.33 0.52 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.63 6.88 -51.93 -0.36 0.28 16 35 H 0.08 1.45 6.06 -51.92 -0.31 1.13 16 36 H 0.07 1.29 7.42 -51.93 -0.39 0.90 16 37 H 0.05 1.14 4.84 -51.93 -0.25 0.89 16 38 H 0.03 0.82 6.34 -51.93 -0.33 0.49 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.10 2.00 7.95 -51.93 -0.41 1.59 16 41 H 0.09 1.64 7.19 -51.93 -0.37 1.27 16 42 H 0.06 1.01 7.96 -51.93 -0.41 0.59 16 43 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 46 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -27.10 368.29 -8.56 -35.67 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.64 Total: 5.84 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -0.87 Total: -14.04 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.34 Total: -36.00 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.10 -8.56 -35.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345896982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.026 kcal (2) G-P(sol) polarization free energy of solvation -27.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds