Wall clock time and date at job start Tue Mar 31 2020 05:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47169 * 2 1 4 4 C 1.52999 * 109.47206 * 239.99933 * 2 1 3 5 5 C 1.50701 * 109.47257 * 59.99968 * 4 2 1 6 6 H 1.08003 * 120.00092 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00054 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00108 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00282 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47287 * 89.99488 * 9 7 5 11 11 H 1.48497 * 109.47336 * 210.00170 * 9 7 5 12 12 H 1.48503 * 109.47151 * 329.99775 * 9 7 5 13 13 C 1.52994 * 109.46772 * 119.99981 * 2 1 3 14 14 N 1.46503 * 109.47421 * 299.99714 * 13 2 1 15 15 C 1.34773 * 120.00140 * 180.02562 * 14 13 2 16 16 O 1.21281 * 120.00040 * 359.72729 * 15 14 13 17 17 C 1.50696 * 119.99849 * 180.02562 * 15 14 13 18 18 C 1.53001 * 117.49838 * 241.32318 * 17 15 14 19 19 C 1.53004 * 117.49830 * 359.97438 * 18 17 15 20 20 C 1.52997 * 117.49927 * 145.02122 * 18 17 15 21 21 C 1.52998 * 117.50003 * 172.66368 * 17 15 14 22 22 C 1.53000 * 117.50406 * 214.97905 * 21 17 15 23 23 C 1.53009 * 117.49591 * 359.97438 * 21 17 15 24 24 H 1.08996 * 109.47381 * 300.00121 * 1 2 3 25 25 H 1.09003 * 109.47045 * 59.99955 * 1 2 3 26 26 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47269 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47174 * 299.99966 * 3 2 1 29 29 H 1.09005 * 109.47226 * 59.99458 * 3 2 1 30 30 H 1.08993 * 109.47336 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47126 * 300.00112 * 4 2 1 32 32 H 0.96999 * 119.99960 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47170 * 180.02562 * 13 2 1 34 34 H 1.08993 * 109.47389 * 60.00388 * 13 2 1 35 35 H 0.97004 * 119.99450 * 0.02562 * 14 13 2 36 36 H 1.09003 * 115.55322 * 26.99207 * 17 15 14 37 37 H 1.08992 * 109.47125 * 111.39172 * 19 18 17 38 38 H 1.09001 * 109.46685 * 231.39337 * 19 18 17 39 39 H 1.08997 * 109.46636 * 351.38960 * 19 18 17 40 40 H 1.08998 * 109.47553 * 8.60852 * 20 18 17 41 41 H 1.09005 * 109.47069 * 128.60795 * 20 18 17 42 42 H 1.09002 * 109.47046 * 248.60267 * 20 18 17 43 43 H 1.09004 * 109.47396 * 111.38406 * 22 21 17 44 44 H 1.08995 * 109.47476 * 231.39150 * 22 21 17 45 45 H 1.09004 * 109.46861 * 351.39054 * 22 21 17 46 46 H 1.08994 * 109.47161 * 61.66183 * 23 21 17 47 47 H 1.09001 * 109.46949 * 181.65877 * 23 21 17 48 48 H 1.09001 * 109.46909 * 301.65169 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3807 7 6 1.8712 -0.4816 -3.7319 8 7 1.4333 0.1386 -4.8058 9 14 2.9452 -2.0004 -3.9034 10 1 2.0866 -3.2112 -3.9493 11 1 3.7376 -1.9075 -5.1558 12 1 3.8652 -2.0898 -2.7411 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4908 3.6695 16 8 2.5710 -1.4795 3.7808 17 6 1.3748 0.2193 4.8999 18 6 2.4181 0.8064 5.8527 19 6 3.8921 0.6271 5.4835 20 6 2.0695 2.1167 6.5615 21 6 1.6328 -0.4448 6.2539 22 6 0.5595 -0.2892 7.3331 23 6 2.3811 -1.7794 6.2549 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 -0.7217 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 1.6676 -0.1929 -5.6868 33 1 3.1299 -0.7209 1.2495 34 1 1.6766 -1.7488 1.2492 35 1 0.9936 0.7579 2.3564 36 1 0.4401 0.7668 4.7779 37 1 4.3211 1.5940 5.2211 38 1 4.4312 0.2089 6.3336 39 1 3.9738 -0.0497 4.6330 40 1 1.0234 2.3619 6.3781 41 1 2.2339 2.0048 7.6333 42 1 2.7029 2.9167 6.1784 43 1 0.0853 -1.2536 7.5157 44 1 1.0193 0.0697 8.2538 45 1 -0.1910 0.4270 6.9986 46 1 3.3769 -1.6379 5.8352 47 1 2.4667 -2.1471 7.2775 48 1 1.8325 -2.5039 5.6531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345897694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:05 Heat of formation + Delta-G solvation = -42.382091 kcal Electronic energy + Delta-G solvation = -23180.114415 eV Core-core repulsion = 20041.868385 eV Total energy + Delta-G solvation = -3138.246030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71036 -38.37374 -36.82172 -33.61831 -32.10037 -31.31600 -28.84728 -28.59175 -27.70453 -26.55825 -26.36975 -26.07286 -22.98048 -21.51540 -19.79655 -18.05949 -17.94097 -16.96426 -16.69346 -15.55217 -15.38688 -14.90670 -14.45093 -14.24873 -13.97000 -13.71700 -13.47428 -13.17305 -12.96758 -12.73051 -12.64992 -12.54480 -12.45808 -12.27194 -12.12863 -11.98638 -11.87664 -11.82212 -11.23890 -11.11617 -11.00771 -10.86574 -10.61851 -10.48881 -9.96953 -9.93849 -9.81789 -9.74673 -9.60565 -9.18878 -8.99049 -8.72748 -8.53803 -6.04591 -4.01851 2.58210 3.31303 3.35033 3.39411 3.43448 3.62289 4.44416 4.45435 4.50644 4.54196 4.85635 4.95758 5.12018 5.28094 5.30299 5.37659 5.39625 5.49375 5.50445 5.53479 5.64089 5.67408 5.73920 5.75251 5.78265 5.87773 5.92565 5.98472 6.11461 6.12232 6.13049 6.17853 6.22863 6.32147 6.47891 6.53810 6.59381 6.73511 6.91413 7.01237 7.04927 7.20108 7.36540 7.72170 7.80881 8.44200 8.52899 8.99440 9.58182 11.08170 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.003528 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.339986 B = 7933.938447 C = 8176.171308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.127 3.873 14 N -0.718 5.718 15 C 0.539 3.461 16 O -0.540 6.540 17 C -0.183 4.183 18 C -0.093 4.093 19 C -0.128 4.128 20 C -0.114 4.114 21 C -0.087 4.087 22 C -0.114 4.114 23 C -0.107 4.107 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.399 0.601 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 2.588 23.614 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.039 4.039 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.004 3.996 14 N -0.369 5.369 15 C 0.325 3.675 16 O -0.419 6.419 17 C -0.205 4.205 18 C -0.094 4.094 19 C -0.185 4.185 20 C -0.171 4.171 21 C -0.088 4.088 22 C -0.172 4.172 23 C -0.164 4.164 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.177 1.869 23.465 23.540 hybrid contribution 0.126 -0.384 -0.517 0.656 sum 0.304 1.485 22.948 22.998 Atomic orbital electron populations 1.21773 0.94837 1.01224 1.00747 1.20683 0.95793 0.95910 0.93950 1.21766 1.00408 0.95607 1.00754 1.19586 0.96251 0.95472 0.92639 1.21082 1.31811 1.13339 0.88629 0.90407 1.24998 0.95707 0.96753 0.95982 1.69903 1.45972 1.40570 0.97880 0.86857 0.81337 0.83921 0.77646 1.20371 1.21493 1.19008 1.21609 0.98764 0.95971 0.83246 1.46147 1.53246 1.31878 1.05652 1.19568 0.80053 0.84071 0.83763 1.90670 1.38492 1.26138 1.86593 1.22762 1.01638 1.05545 0.90511 1.21663 0.93140 0.94816 0.99778 1.21511 0.92272 1.02234 1.02437 1.21369 1.01457 0.94384 0.99928 1.21674 0.99312 0.94672 0.93147 1.21355 0.96735 1.01978 0.97087 1.21383 1.01193 0.93786 1.00020 0.95021 0.90902 0.93443 0.93449 0.90920 0.94984 0.96404 0.96856 0.92798 0.91969 0.91942 0.76613 0.86561 0.92313 0.91937 0.90691 0.92270 0.91862 0.91955 0.91979 0.91896 0.92405 0.90818 0.93625 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 2 C -0.06 -1.15 0.54 -154.52 -0.08 -1.24 16 3 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.69 8.20 -34.44 -0.28 -13.97 16 6 H 0.08 2.20 5.92 -52.48 -0.31 1.89 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 9 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.13 2.14 4.56 -4.04 -0.02 2.12 16 14 N -0.72 -10.12 4.96 -60.30 -0.30 -10.42 16 15 C 0.54 7.71 6.46 -10.99 -0.07 7.64 16 16 O -0.54 -9.23 11.83 5.56 0.07 -9.17 16 17 C -0.18 -2.04 5.48 -91.77 -0.50 -2.54 16 18 C -0.09 -0.93 2.70 -154.47 -0.42 -1.34 16 19 C -0.13 -1.38 8.17 37.16 0.30 -1.08 16 20 C -0.11 -0.87 8.88 37.16 0.33 -0.54 16 21 C -0.09 -0.90 2.70 -154.47 -0.42 -1.32 16 22 C -0.11 -0.91 8.83 37.16 0.33 -0.58 16 23 C -0.11 -1.25 7.93 37.16 0.29 -0.96 16 24 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 25 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 29 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.40 4.88 6.16 -40.82 -0.25 4.63 16 36 H 0.12 1.10 7.96 -51.93 -0.41 0.68 16 37 H 0.06 0.58 7.92 -51.93 -0.41 0.16 16 38 H 0.06 0.62 7.96 -51.93 -0.41 0.20 16 39 H 0.07 1.01 5.06 -51.93 -0.26 0.75 16 40 H 0.06 0.41 7.78 -51.93 -0.40 0.01 16 41 H 0.06 0.43 8.02 -51.93 -0.42 0.01 16 42 H 0.06 0.46 7.93 -51.93 -0.41 0.04 16 43 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 44 H 0.06 0.43 8.02 -51.93 -0.42 0.02 16 45 H 0.06 0.42 7.78 -51.93 -0.40 0.01 16 46 H 0.07 0.96 5.09 -51.93 -0.26 0.69 16 47 H 0.04 0.45 8.07 -51.93 -0.42 0.03 16 48 H 0.06 0.87 7.36 -51.93 -0.38 0.49 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -30.08 359.81 -7.45 -37.53 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.63 Total: 2.23 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -0.12 Total: -16.01 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.47 Total: -36.91 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.08 -7.45 -37.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345897694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.850 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds