Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47169 * 2 1 4 4 C 1.52999 * 109.47206 * 239.99933 * 2 1 3 5 5 C 1.50701 * 109.47257 * 59.99968 * 4 2 1 6 6 H 1.08003 * 120.00092 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00054 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00108 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00282 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47287 * 89.99488 * 9 7 5 11 11 H 1.48497 * 109.47336 * 210.00170 * 9 7 5 12 12 H 1.48503 * 109.47151 * 329.99775 * 9 7 5 13 13 C 1.52994 * 109.46772 * 119.99981 * 2 1 3 14 14 N 1.46503 * 109.47421 * 299.99714 * 13 2 1 15 15 C 1.34773 * 120.00140 * 180.02562 * 14 13 2 16 16 O 1.21281 * 120.00040 * 359.72729 * 15 14 13 17 17 C 1.50696 * 119.99849 * 180.02562 * 15 14 13 18 18 C 1.53001 * 117.49838 * 241.32318 * 17 15 14 19 19 C 1.53004 * 117.49830 * 359.97438 * 18 17 15 20 20 C 1.52997 * 117.49927 * 145.02122 * 18 17 15 21 21 C 1.52998 * 117.50003 * 172.66368 * 17 15 14 22 22 C 1.53000 * 117.50406 * 214.97905 * 21 17 15 23 23 C 1.53009 * 117.49591 * 359.97438 * 21 17 15 24 24 H 1.08996 * 109.47381 * 300.00121 * 1 2 3 25 25 H 1.09003 * 109.47045 * 59.99955 * 1 2 3 26 26 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47269 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47174 * 299.99966 * 3 2 1 29 29 H 1.09005 * 109.47226 * 59.99458 * 3 2 1 30 30 H 1.08993 * 109.47336 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47126 * 300.00112 * 4 2 1 32 32 H 0.96999 * 119.99960 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47170 * 180.02562 * 13 2 1 34 34 H 1.08993 * 109.47389 * 60.00388 * 13 2 1 35 35 H 0.97004 * 119.99450 * 0.02562 * 14 13 2 36 36 H 1.09003 * 115.55322 * 26.99207 * 17 15 14 37 37 H 1.08992 * 109.47125 * 111.39172 * 19 18 17 38 38 H 1.09001 * 109.46685 * 231.39337 * 19 18 17 39 39 H 1.08997 * 109.46636 * 351.38960 * 19 18 17 40 40 H 1.08998 * 109.47553 * 8.60852 * 20 18 17 41 41 H 1.09005 * 109.47069 * 128.60795 * 20 18 17 42 42 H 1.09002 * 109.47046 * 248.60267 * 20 18 17 43 43 H 1.09004 * 109.47396 * 111.38406 * 22 21 17 44 44 H 1.08995 * 109.47476 * 231.39150 * 22 21 17 45 45 H 1.09004 * 109.46861 * 351.39054 * 22 21 17 46 46 H 1.08994 * 109.47161 * 61.66183 * 23 21 17 47 47 H 1.09001 * 109.46949 * 181.65877 * 23 21 17 48 48 H 1.09001 * 109.46909 * 301.65169 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3807 7 6 1.8712 -0.4816 -3.7319 8 7 1.4333 0.1386 -4.8058 9 14 2.9452 -2.0004 -3.9034 10 1 2.0866 -3.2112 -3.9493 11 1 3.7376 -1.9075 -5.1558 12 1 3.8652 -2.0898 -2.7411 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4908 3.6695 16 8 2.5710 -1.4795 3.7808 17 6 1.3748 0.2193 4.8999 18 6 2.4181 0.8064 5.8527 19 6 3.8921 0.6271 5.4835 20 6 2.0695 2.1167 6.5615 21 6 1.6328 -0.4448 6.2539 22 6 0.5595 -0.2892 7.3331 23 6 2.3811 -1.7794 6.2549 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 -0.7217 -1.2490 31 1 1.6767 -1.7489 -1.2492 32 1 1.6676 -0.1929 -5.6868 33 1 3.1299 -0.7209 1.2495 34 1 1.6766 -1.7488 1.2492 35 1 0.9936 0.7579 2.3564 36 1 0.4401 0.7668 4.7779 37 1 4.3211 1.5940 5.2211 38 1 4.4312 0.2089 6.3336 39 1 3.9738 -0.0497 4.6330 40 1 1.0234 2.3619 6.3781 41 1 2.2339 2.0048 7.6333 42 1 2.7029 2.9167 6.1784 43 1 0.0853 -1.2536 7.5157 44 1 1.0193 0.0697 8.2538 45 1 -0.1910 0.4270 6.9986 46 1 3.3769 -1.6379 5.8352 47 1 2.4667 -2.1471 7.2775 48 1 1.8325 -2.5039 5.6531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345897694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = -59.417072 kcal Electronic energy + Delta-G solvation = -23180.853107 eV Core-core repulsion = 20041.868385 eV Total energy + Delta-G solvation = -3138.984722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68710 -39.58259 -38.12850 -35.18244 -33.97885 -32.04720 -30.00147 -29.51817 -29.21188 -28.00701 -27.36156 -27.07394 -24.64337 -22.79066 -20.91460 -19.54129 -18.91267 -18.69322 -17.88863 -16.76642 -16.53628 -16.13137 -15.80884 -15.50991 -15.31645 -15.04154 -14.75167 -14.30217 -14.19802 -14.16260 -13.82541 -13.64088 -13.32470 -13.20047 -13.06490 -12.90787 -12.85240 -12.82203 -12.67896 -12.62605 -12.55588 -12.32198 -12.18085 -11.78491 -11.63680 -11.52572 -11.25725 -10.93852 -10.74734 -10.72007 -10.71563 -10.16969 -9.95582 -8.23885 -6.24014 1.34290 1.37055 1.47069 1.54883 2.24717 2.37603 2.76961 3.11463 3.63318 3.70875 3.72433 3.91204 4.04317 4.09813 4.14925 4.20712 4.30045 4.59621 4.62408 4.69313 4.72534 4.77369 4.79797 4.83906 4.93309 4.97305 5.00129 5.01742 5.04864 5.07422 5.08499 5.15089 5.19974 5.22560 5.28096 5.34364 5.37665 5.38586 5.44693 5.51810 5.57184 5.64043 5.67384 5.75065 6.36556 6.65250 6.82781 7.34535 7.38844 8.91737 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.003528 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.339986 B = 7933.938447 C = 8176.171308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.122 4.122 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.934 3.066 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.253 1.253 13 C 0.142 3.858 14 N -0.711 5.711 15 C 0.535 3.465 16 O -0.573 6.573 17 C -0.191 4.191 18 C -0.085 4.085 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.111 4.111 23 C -0.104 4.104 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.013 0.987 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.410 0.590 36 H 0.140 0.860 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 3.152 26.554 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.058 4.058 3 C -0.179 4.179 4 C -0.041 4.041 5 C -0.540 4.540 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.177 1.177 13 C 0.018 3.982 14 N -0.363 5.363 15 C 0.323 3.677 16 O -0.453 6.453 17 C -0.212 4.212 18 C -0.085 4.085 19 C -0.185 4.185 20 C -0.168 4.168 21 C -0.091 4.091 22 C -0.167 4.167 23 C -0.161 4.161 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.247 0.753 36 H 0.158 0.842 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.142 2.449 26.430 26.544 hybrid contribution 0.228 -0.542 -1.396 1.514 sum 0.086 1.907 25.035 25.107 Atomic orbital electron populations 1.21695 0.93926 1.01170 1.01239 1.20547 0.96465 0.96119 0.92700 1.21685 1.00140 0.94899 1.01218 1.19557 0.95851 0.95427 0.93222 1.21364 1.30280 1.12312 0.90074 0.92922 1.25820 0.97416 0.99865 0.95890 1.70038 1.48115 1.42631 0.98437 0.85905 0.79884 0.80437 0.77901 1.19698 1.21341 1.17729 1.21212 0.97985 0.95427 0.83620 1.45991 1.53391 1.32075 1.04863 1.20171 0.79297 0.83720 0.84486 1.90666 1.39871 1.27715 1.87052 1.22830 1.02982 1.06269 0.89136 1.21774 0.92037 0.95864 0.98868 1.21490 0.93547 1.01963 1.01498 1.21394 1.02321 0.92758 1.00318 1.21794 0.99990 0.93974 0.93329 1.21367 0.96210 1.02480 0.96687 1.21298 1.00047 0.94469 1.00328 0.91328 0.93560 0.93777 0.93821 0.93571 0.91341 0.96852 0.97011 0.92825 0.93075 0.93001 0.75254 0.84186 0.91382 0.91373 0.93691 0.90999 0.90612 0.91585 0.92040 0.90477 0.91105 0.92680 0.91973 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 8.05 71.98 0.58 -3.57 16 2 C -0.06 -2.08 0.54 -52.19 -0.03 -2.11 16 3 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 4 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 5 C -0.50 -27.46 8.20 25.60 0.21 -27.25 16 6 H 0.05 3.09 5.92 -2.91 -0.02 3.08 16 7 C 0.01 0.37 5.47 84.65 0.46 0.83 16 8 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 9 Si 0.93 44.79 27.47 68.60 1.88 46.67 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 13 C 0.14 4.63 4.56 86.38 0.39 5.02 16 14 N -0.71 -18.66 4.96 -463.08 -2.30 -20.96 16 15 C 0.53 14.58 6.46 87.66 0.57 15.14 16 16 O -0.57 -19.56 11.83 -3.03 -0.04 -19.60 16 17 C -0.19 -3.75 5.48 -11.54 -0.06 -3.82 16 18 C -0.08 -1.45 2.70 -52.16 -0.14 -1.59 16 19 C -0.13 -2.59 8.17 71.98 0.59 -2.00 16 20 C -0.11 -1.25 8.88 71.98 0.64 -0.61 16 21 C -0.09 -1.65 2.70 -52.15 -0.14 -1.79 16 22 C -0.11 -1.37 8.83 71.98 0.64 -0.73 16 23 C -0.10 -2.36 7.93 71.99 0.57 -1.79 16 24 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 25 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.80 6.62 -2.39 -0.02 1.79 16 29 H 0.07 1.78 6.86 -2.38 -0.02 1.77 16 30 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 31 H 0.01 0.53 7.57 -2.39 -0.02 0.52 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.41 8.74 6.16 -92.71 -0.57 8.17 16 36 H 0.14 2.07 7.96 -2.39 -0.02 2.05 16 37 H 0.07 1.21 7.92 -2.39 -0.02 1.19 16 38 H 0.07 1.27 7.96 -2.39 -0.02 1.25 16 39 H 0.04 1.19 5.06 -2.39 -0.01 1.18 16 40 H 0.07 0.66 7.78 -2.39 -0.02 0.64 16 41 H 0.08 0.70 8.02 -2.38 -0.02 0.68 16 42 H 0.07 0.72 7.93 -2.39 -0.02 0.70 16 43 H 0.06 0.78 8.09 -2.38 -0.02 0.76 16 44 H 0.08 0.75 8.02 -2.39 -0.02 0.73 16 45 H 0.07 0.71 7.78 -2.39 -0.02 0.69 16 46 H 0.05 1.44 5.09 -2.39 -0.01 1.43 16 47 H 0.06 1.14 8.07 -2.39 -0.02 1.13 16 48 H 0.04 1.12 7.36 -2.39 -0.02 1.11 16 Total: -1.00 -67.05 359.81 5.09 -61.95 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.30 Total: 18.29 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 4.95 Total: -27.82 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.00 Total: -79.49 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.04 Total: -19.60 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -67.05 5.09 -61.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345897694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.535 kcal (2) G-P(sol) polarization free energy of solvation -67.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds