Wall clock time and date at job start Tue Mar 31 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48493 * 109.47158 * 270.00276 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00116 * 3 2 1 6 6 H 1.48499 * 109.47242 * 149.99832 * 3 2 1 7 7 C 1.37871 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99848 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00200 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47051 * 175.61025 * 9 7 2 11 11 C 1.46907 * 111.00182 * 71.24176 * 10 9 7 12 12 C 1.52999 * 109.47497 * 189.99838 * 11 10 9 13 13 C 1.53000 * 109.47297 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47113 * 180.02562 * 13 12 11 15 15 C 1.53180 * 109.53817 * 294.55314 * 14 13 12 16 16 C 1.53095 * 109.16023 * 183.15496 * 15 14 13 17 17 O 1.42896 * 109.41568 * 57.60811 * 16 15 14 18 18 C 1.42903 * 114.09902 * 298.84093 * 17 16 15 19 19 C 1.53097 * 109.41413 * 61.15920 * 18 17 16 20 20 C 1.46901 * 111.00159 * 195.19236 * 10 9 7 21 21 C 1.53004 * 109.46441 * 67.58810 * 20 10 9 22 22 C 1.52996 * 117.49589 * 243.10414 * 21 20 10 23 23 C 1.53001 * 60.00512 * 252.51693 * 22 21 20 24 24 H 0.96996 * 120.00385 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47002 * 55.61561 * 9 7 2 26 26 H 1.08992 * 109.46850 * 295.60798 * 9 7 2 27 27 H 1.09000 * 109.46928 * 310.00203 * 11 10 9 28 28 H 1.09000 * 109.46840 * 69.99648 * 11 10 9 29 29 H 1.08997 * 109.46837 * 300.00198 * 12 11 10 30 30 H 1.08998 * 109.46719 * 60.00004 * 12 11 10 31 31 H 1.09004 * 109.46607 * 299.99868 * 13 12 11 32 32 H 1.09000 * 109.47043 * 59.99809 * 13 12 11 33 33 H 1.08994 * 109.54561 * 54.81994 * 14 13 12 34 34 H 1.09002 * 109.52733 * 303.05667 * 15 14 13 35 35 H 1.08997 * 109.52293 * 63.25195 * 15 14 13 36 36 H 1.09007 * 109.48128 * 297.62403 * 16 15 14 37 37 H 1.09003 * 109.47962 * 177.59304 * 16 15 14 38 38 H 1.09001 * 109.48239 * 301.17671 * 18 17 16 39 39 H 1.09004 * 109.49220 * 181.14780 * 18 17 16 40 40 H 1.09000 * 109.52217 * 182.48350 * 19 18 17 41 41 H 1.08999 * 109.52004 * 62.29350 * 19 18 17 42 42 H 1.09002 * 109.47425 * 187.58279 * 20 10 9 43 43 H 1.09001 * 109.47387 * 307.59309 * 20 10 9 44 44 H 1.08992 * 115.55371 * 28.81955 * 21 20 10 45 45 H 1.09004 * 117.50548 * 0.02562 * 22 21 20 46 46 H 1.09007 * 117.49547 * 145.02380 * 22 21 20 47 47 H 1.09001 * 117.49944 * 252.51282 * 23 22 21 48 48 H 1.08996 * 117.49871 * 107.49060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5748 0.1044 11 6 3.7606 -3.3155 -1.1413 12 6 4.0501 -4.8008 -0.9157 13 6 3.8000 -5.5720 -2.2132 14 6 4.0889 -7.0574 -1.9873 15 6 5.5800 -7.2505 -1.6945 16 6 5.8737 -8.7458 -1.5480 17 8 5.4795 -9.4265 -2.7410 18 6 4.0861 -9.3205 -3.0399 19 6 3.7204 -7.8482 -3.2463 20 6 5.4248 -2.6024 0.4664 21 6 5.5980 -2.0800 1.8940 22 6 6.4148 -0.8004 2.0838 23 6 6.9983 -2.1500 2.5068 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6137 0.8470 26 1 3.8745 -0.7495 -0.9278 27 1 2.7209 -3.1897 -1.4435 28 1 4.4153 -2.9324 -1.9240 29 1 5.0898 -4.9264 -0.6134 30 1 3.3953 -5.1837 -0.1329 31 1 2.7603 -5.4463 -2.5158 32 1 4.4550 -5.1889 -2.9956 33 1 3.5005 -7.4193 -1.1442 34 1 6.1685 -6.8425 -2.5163 35 1 5.8390 -6.7361 -0.7691 36 1 5.3159 -9.1447 -0.7007 37 1 6.9411 -8.8920 -1.3819 38 1 3.5048 -9.7267 -2.2121 39 1 3.8653 -9.8807 -3.9485 40 1 2.6497 -7.7612 -3.4309 41 1 4.2714 -7.4523 -4.0994 42 1 5.7952 -3.6258 0.4065 43 1 5.9871 -1.9715 -0.2220 44 1 4.7492 -2.2390 2.5590 45 1 6.8285 -0.3303 1.1915 46 1 6.1032 -0.1169 2.8737 47 1 7.0706 -2.3545 3.5750 48 1 7.7960 -2.5681 1.8928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346820313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:01 Heat of formation + Delta-G solvation = -42.600009 kcal Electronic energy + Delta-G solvation = -22621.320026 eV Core-core repulsion = 19483.064547 eV Total energy + Delta-G solvation = -3138.255479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.59629 -38.08032 -36.24035 -35.03574 -32.55081 -31.41484 -31.05434 -28.21352 -27.05826 -24.81388 -23.70481 -22.79192 -22.08510 -20.97979 -20.56201 -20.04822 -19.46534 -16.84462 -16.28328 -16.15917 -15.63093 -15.23461 -14.87498 -14.73264 -14.46285 -14.06951 -13.94865 -13.51572 -13.38343 -12.98270 -12.50217 -12.42282 -12.28259 -12.01075 -11.68544 -11.49283 -11.39930 -11.33574 -11.23819 -10.88597 -10.72894 -10.70824 -10.51164 -10.41376 -10.16825 -10.09853 -9.98431 -9.76712 -9.56389 -9.36806 -9.20506 -8.54931 -7.35544 -6.02837 -3.99167 3.29177 3.36914 3.39779 3.72138 4.08818 4.44093 4.49275 4.62189 4.73407 4.77703 4.87415 5.05290 5.13019 5.20691 5.23983 5.29213 5.30800 5.37546 5.41798 5.51094 5.54412 5.63805 5.70077 5.77248 5.80494 5.85599 5.88432 5.91140 5.95988 6.03874 6.11042 6.13193 6.15798 6.20478 6.32071 6.34263 6.40682 6.63132 6.68983 6.77922 6.94584 7.02092 7.02942 7.66977 7.95781 8.10660 8.69635 9.06200 9.59678 11.10479 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.003896 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.662971 B = 7185.563347 C = 8621.410848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.161 3.839 10 N -0.524 5.524 11 C 0.063 3.937 12 C -0.115 4.115 13 C -0.112 4.112 14 C -0.088 4.088 15 C -0.151 4.151 16 C 0.060 3.940 17 O -0.387 6.387 18 C 0.060 3.940 19 C -0.152 4.152 20 C 0.082 3.918 21 C -0.132 4.132 22 C -0.185 4.185 23 C -0.186 4.186 24 H 0.263 0.737 25 H 0.035 0.965 26 H -0.020 1.020 27 H 0.086 0.914 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.021 0.979 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.470 -14.082 -2.477 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.699 3.301 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.098 0.902 9 C 0.034 3.966 10 N -0.248 5.248 11 C -0.065 4.065 12 C -0.153 4.153 13 C -0.150 4.150 14 C -0.107 4.107 15 C -0.189 4.189 16 C -0.017 4.017 17 O -0.306 6.306 18 C -0.016 4.016 19 C -0.190 4.190 20 C -0.047 4.047 21 C -0.150 4.150 22 C -0.222 4.222 23 C -0.223 4.223 24 H 0.072 0.928 25 H 0.053 0.947 26 H -0.003 1.003 27 H 0.105 0.895 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.132 0.868 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.169 -14.278 -2.219 18.891 hybrid contribution 0.600 1.717 -0.462 1.877 sum 12.769 -12.561 -2.681 18.111 Atomic orbital electron populations 1.69892 1.06096 1.26719 1.51467 1.24882 0.94689 0.98746 0.94993 0.86914 0.80546 0.84210 0.78450 1.20468 1.21234 1.18942 1.21058 0.88877 0.94595 1.49765 0.90243 1.20213 0.96871 0.84559 0.94917 1.61955 1.13399 1.17030 1.32374 1.22013 1.02151 0.92126 0.90254 1.21665 1.01197 0.95327 0.97091 1.21585 1.01894 0.93236 0.98262 1.21203 0.95825 0.96056 0.97588 1.22290 0.96927 0.96693 1.02991 1.22602 1.00338 0.91729 0.87023 1.87903 1.24813 1.73995 1.43904 1.22582 0.82270 0.96089 1.00696 1.22262 1.02058 0.95783 0.98868 1.21680 0.90719 0.99307 0.92962 1.22317 0.94228 1.00208 0.98293 1.22995 1.04973 0.91139 1.03103 1.22923 0.97268 1.01391 1.00726 0.92761 0.94669 1.00279 0.89517 0.96574 0.92548 0.91317 0.91581 0.92318 0.91004 0.91207 0.90462 0.93283 0.89154 0.93296 0.89155 0.90768 0.91126 0.91265 0.96119 0.86801 0.89392 0.89173 0.89197 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.63 27.56 -169.99 -4.68 16.94 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.32 6.42 56.52 0.36 -5.96 16 7 C -0.50 -14.30 9.07 -34.44 -0.31 -14.61 16 8 H 0.08 2.45 7.62 -52.49 -0.40 2.05 16 9 C 0.16 3.89 3.69 -4.98 -0.02 3.87 16 10 N -0.52 -10.74 4.45 -236.06 -1.05 -11.79 16 11 C 0.06 1.16 4.80 -3.82 -0.02 1.14 16 12 C -0.12 -1.66 4.93 -26.73 -0.13 -1.79 16 13 C -0.11 -1.37 4.69 -26.73 -0.13 -1.50 16 14 C -0.09 -0.93 2.27 -90.44 -0.21 -1.14 16 15 C -0.15 -1.51 5.10 -26.59 -0.14 -1.64 16 16 C 0.06 0.57 6.84 37.21 0.25 0.82 16 17 O -0.39 -4.32 10.77 -35.23 -0.38 -4.70 16 18 C 0.06 0.56 6.84 37.21 0.25 0.81 16 19 C -0.15 -1.46 5.42 -26.59 -0.14 -1.61 16 20 C 0.08 1.40 5.11 -3.82 -0.02 1.38 16 21 C -0.13 -2.15 4.74 -90.61 -0.43 -2.58 16 22 C -0.19 -2.78 10.05 -26.73 -0.27 -3.05 16 23 C -0.19 -2.41 10.25 -26.72 -0.27 -2.69 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 25 H 0.04 0.87 5.62 -51.93 -0.29 0.58 16 26 H -0.02 -0.50 7.71 -51.93 -0.40 -0.91 16 27 H 0.09 1.82 6.96 -51.93 -0.36 1.46 16 28 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 29 H 0.06 0.76 4.86 -51.93 -0.25 0.50 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.75 6.75 -51.93 -0.35 0.40 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.05 6.04 -51.93 -0.31 0.73 16 43 H 0.02 0.36 7.84 -51.93 -0.41 -0.05 16 44 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 45 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 46 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -30.42 366.63 -10.62 -41.03 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -9.13 Total: 0.62 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.67 Total: -20.71 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.28 Total: -38.71 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.38 Total: -4.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.68 Total: 16.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.42 -10.62 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346820313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.566 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds