Wall clock time and date at job start Tue Mar 31 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48493 * 109.47158 * 270.00276 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00116 * 3 2 1 6 6 H 1.48499 * 109.47242 * 149.99832 * 3 2 1 7 7 C 1.37871 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99848 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00200 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47051 * 175.61025 * 9 7 2 11 11 C 1.46907 * 111.00182 * 71.24176 * 10 9 7 12 12 C 1.52999 * 109.47497 * 189.99838 * 11 10 9 13 13 C 1.53000 * 109.47297 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47113 * 180.02562 * 13 12 11 15 15 C 1.53180 * 109.53817 * 294.55314 * 14 13 12 16 16 C 1.53095 * 109.16023 * 183.15496 * 15 14 13 17 17 O 1.42896 * 109.41568 * 57.60811 * 16 15 14 18 18 C 1.42903 * 114.09902 * 298.84093 * 17 16 15 19 19 C 1.53097 * 109.41413 * 61.15920 * 18 17 16 20 20 C 1.46901 * 111.00159 * 195.19236 * 10 9 7 21 21 C 1.53004 * 109.46441 * 67.58810 * 20 10 9 22 22 C 1.52996 * 117.49589 * 243.10414 * 21 20 10 23 23 C 1.53001 * 60.00512 * 252.51693 * 22 21 20 24 24 H 0.96996 * 120.00385 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47002 * 55.61561 * 9 7 2 26 26 H 1.08992 * 109.46850 * 295.60798 * 9 7 2 27 27 H 1.09000 * 109.46928 * 310.00203 * 11 10 9 28 28 H 1.09000 * 109.46840 * 69.99648 * 11 10 9 29 29 H 1.08997 * 109.46837 * 300.00198 * 12 11 10 30 30 H 1.08998 * 109.46719 * 60.00004 * 12 11 10 31 31 H 1.09004 * 109.46607 * 299.99868 * 13 12 11 32 32 H 1.09000 * 109.47043 * 59.99809 * 13 12 11 33 33 H 1.08994 * 109.54561 * 54.81994 * 14 13 12 34 34 H 1.09002 * 109.52733 * 303.05667 * 15 14 13 35 35 H 1.08997 * 109.52293 * 63.25195 * 15 14 13 36 36 H 1.09007 * 109.48128 * 297.62403 * 16 15 14 37 37 H 1.09003 * 109.47962 * 177.59304 * 16 15 14 38 38 H 1.09001 * 109.48239 * 301.17671 * 18 17 16 39 39 H 1.09004 * 109.49220 * 181.14780 * 18 17 16 40 40 H 1.09000 * 109.52217 * 182.48350 * 19 18 17 41 41 H 1.08999 * 109.52004 * 62.29350 * 19 18 17 42 42 H 1.09002 * 109.47425 * 187.58279 * 20 10 9 43 43 H 1.09001 * 109.47387 * 307.59309 * 20 10 9 44 44 H 1.08992 * 115.55371 * 28.81955 * 21 20 10 45 45 H 1.09004 * 117.50548 * 0.02562 * 22 21 20 46 46 H 1.09007 * 117.49547 * 145.02380 * 22 21 20 47 47 H 1.09001 * 117.49944 * 252.51282 * 23 22 21 48 48 H 1.08996 * 117.49871 * 107.49060 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5748 0.1044 11 6 3.7606 -3.3155 -1.1413 12 6 4.0501 -4.8008 -0.9157 13 6 3.8000 -5.5720 -2.2132 14 6 4.0889 -7.0574 -1.9873 15 6 5.5800 -7.2505 -1.6945 16 6 5.8737 -8.7458 -1.5480 17 8 5.4795 -9.4265 -2.7410 18 6 4.0861 -9.3205 -3.0399 19 6 3.7204 -7.8482 -3.2463 20 6 5.4248 -2.6024 0.4664 21 6 5.5980 -2.0800 1.8940 22 6 6.4148 -0.8004 2.0838 23 6 6.9983 -2.1500 2.5068 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6137 0.8470 26 1 3.8745 -0.7495 -0.9278 27 1 2.7209 -3.1897 -1.4435 28 1 4.4153 -2.9324 -1.9240 29 1 5.0898 -4.9264 -0.6134 30 1 3.3953 -5.1837 -0.1329 31 1 2.7603 -5.4463 -2.5158 32 1 4.4550 -5.1889 -2.9956 33 1 3.5005 -7.4193 -1.1442 34 1 6.1685 -6.8425 -2.5163 35 1 5.8390 -6.7361 -0.7691 36 1 5.3159 -9.1447 -0.7007 37 1 6.9411 -8.8920 -1.3819 38 1 3.5048 -9.7267 -2.2121 39 1 3.8653 -9.8807 -3.9485 40 1 2.6497 -7.7612 -3.4309 41 1 4.2714 -7.4523 -4.0994 42 1 5.7952 -3.6258 0.4065 43 1 5.9871 -1.9715 -0.2220 44 1 4.7492 -2.2390 2.5590 45 1 6.8285 -0.3303 1.1915 46 1 6.1032 -0.1169 2.8737 47 1 7.0706 -2.3545 3.5750 48 1 7.7960 -2.5681 1.8928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346820313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:01 Heat of formation + Delta-G solvation = -60.404566 kcal Electronic energy + Delta-G solvation = -22622.092090 eV Core-core repulsion = 19483.064547 eV Total energy + Delta-G solvation = -3139.027543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41818 -39.46118 -37.40723 -36.22976 -34.63374 -32.56026 -31.92334 -30.07291 -28.23004 -26.23818 -24.54861 -24.12285 -23.16657 -22.44795 -21.81961 -21.00213 -20.81700 -18.99062 -17.11324 -16.99164 -16.92110 -16.53099 -16.35365 -15.81213 -15.53305 -15.41865 -15.30299 -14.80291 -14.60621 -14.31791 -14.28241 -13.70108 -13.48434 -13.28153 -12.86482 -12.75513 -12.61160 -12.57094 -12.34529 -12.26757 -12.19132 -12.01213 -11.82724 -11.61387 -11.51810 -11.47887 -11.17740 -11.12611 -11.02541 -10.78219 -10.62071 -10.37876 -8.99943 -8.28167 -6.30197 1.31885 1.33952 1.44973 2.33571 2.91442 3.01337 3.04250 3.20274 3.73604 3.79220 3.92487 3.95285 4.05166 4.12938 4.15748 4.19640 4.34094 4.39552 4.46889 4.51186 4.54838 4.60250 4.64880 4.76283 4.77072 4.78969 4.82295 4.85476 4.87775 4.92121 5.02217 5.04515 5.07655 5.08748 5.13746 5.19930 5.26081 5.28137 5.35715 5.40249 5.47141 5.54919 5.58140 6.03144 6.30230 6.44602 6.69521 6.75947 7.33119 8.88651 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.003896 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.662971 B = 7185.563347 C = 8621.410848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.511 4.511 8 H 0.036 0.964 9 C 0.175 3.825 10 N -0.540 5.540 11 C 0.065 3.935 12 C -0.100 4.100 13 C -0.106 4.106 14 C -0.085 4.085 15 C -0.148 4.148 16 C 0.057 3.943 17 O -0.405 6.405 18 C 0.058 3.942 19 C -0.150 4.150 20 C 0.086 3.914 21 C -0.161 4.161 22 C -0.195 4.195 23 C -0.150 4.150 24 H 0.266 0.734 25 H 0.035 0.965 26 H -0.024 1.024 27 H 0.048 0.952 28 H 0.022 0.978 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.023 0.977 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.362 -14.396 -2.248 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.171 1.171 7 C -0.549 4.549 8 H 0.055 0.945 9 C 0.047 3.953 10 N -0.264 5.264 11 C -0.063 4.063 12 C -0.138 4.138 13 C -0.144 4.144 14 C -0.104 4.104 15 C -0.186 4.186 16 C -0.019 4.019 17 O -0.325 6.325 18 C -0.018 4.018 19 C -0.187 4.187 20 C -0.042 4.042 21 C -0.179 4.179 22 C -0.232 4.232 23 C -0.187 4.187 24 H 0.075 0.925 25 H 0.053 0.947 26 H -0.007 1.007 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.041 0.959 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.125 0.875 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.081 -14.616 -1.989 21.095 hybrid contribution -0.358 1.734 -0.528 1.847 sum 14.723 -12.882 -2.517 19.724 Atomic orbital electron populations 1.70046 1.08038 1.27961 1.52960 1.25794 0.95542 1.02920 0.94554 0.85799 0.79684 0.78985 0.79045 1.19493 1.20646 1.17129 1.21290 0.91261 0.93087 1.49274 0.94544 1.19904 0.93953 0.86984 0.94410 1.61871 1.16235 1.14880 1.33374 1.21994 0.99960 0.94620 0.89771 1.21531 1.01892 0.92460 0.97880 1.21518 1.01311 0.94446 0.97094 1.21157 0.96602 0.94551 0.98081 1.22258 0.95997 0.97294 1.03006 1.22708 1.01335 0.91095 0.86752 1.87882 1.25692 1.74287 1.44599 1.22687 0.81687 0.95768 1.01661 1.22235 1.02307 0.96087 0.98116 1.21744 0.88135 1.00849 0.93451 1.22220 0.95625 1.02415 0.97677 1.23077 1.05078 0.91614 1.03425 1.23014 0.95029 0.98828 1.01828 0.92528 0.94698 1.00651 0.93356 0.95988 0.90617 0.92600 0.92773 0.91885 0.91210 0.91530 0.90039 0.92664 0.87802 0.92638 0.87824 0.90341 0.91495 0.88960 0.95885 0.89186 0.89228 0.89201 0.87541 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.14 13.96 21.44 0.30 -59.84 16 2 C 0.01 0.53 5.47 84.65 0.46 0.99 16 3 Si 0.94 44.83 27.56 68.60 1.89 46.73 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.25 -11.02 6.42 99.48 0.64 -10.38 16 7 C -0.51 -30.08 9.07 25.60 0.23 -29.85 16 8 H 0.04 2.39 7.62 -2.91 -0.02 2.37 16 9 C 0.17 8.54 3.69 85.56 0.32 8.85 16 10 N -0.54 -22.27 4.45 -900.77 -4.00 -26.28 16 11 C 0.06 2.42 4.80 86.30 0.41 2.84 16 12 C -0.10 -2.84 4.93 30.59 0.15 -2.69 16 13 C -0.11 -2.55 4.69 30.59 0.14 -2.41 16 14 C -0.09 -1.70 2.27 -10.68 -0.02 -1.73 16 15 C -0.15 -2.64 5.10 30.69 0.16 -2.49 16 16 C 0.06 0.97 6.84 72.01 0.49 1.46 16 17 O -0.41 -8.31 10.77 -148.98 -1.60 -9.91 16 18 C 0.06 0.98 6.84 72.01 0.49 1.48 16 19 C -0.15 -2.70 5.42 30.68 0.17 -2.54 16 20 C 0.09 2.78 5.11 86.30 0.44 3.22 16 21 C -0.16 -4.96 4.74 -10.79 -0.05 -5.01 16 22 C -0.19 -5.39 10.05 30.59 0.31 -5.08 16 23 C -0.15 -3.36 10.25 30.60 0.31 -3.05 16 24 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 25 H 0.03 1.71 5.62 -2.39 -0.01 1.69 16 26 H -0.02 -1.19 7.71 -2.39 -0.02 -1.21 16 27 H 0.05 2.16 6.96 -2.39 -0.02 2.14 16 28 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 29 H 0.08 1.86 4.86 -2.39 -0.01 1.85 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.38 6.75 -2.39 -0.02 1.36 16 36 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 2.53 6.04 -2.39 -0.01 2.51 16 43 H 0.02 0.74 7.84 -2.39 -0.02 0.72 16 44 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.09 2.44 8.03 -2.39 -0.02 2.42 16 46 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 47 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -67.59 366.63 1.42 -66.17 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.82 Total: 19.13 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 4.01 Total: -36.00 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -3.71 Total: -86.12 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.60 Total: -9.91 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.89 Total: 46.73 kcal Total: -67.59 1.42 -66.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346820313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.768 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds