Wall clock time and date at job start Tue Mar 31 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47007 * 2 1 4 4 C 1.53001 * 109.47549 * 120.00150 * 2 1 3 5 5 C 1.53000 * 109.47261 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46855 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47134 * 60.00491 * 6 5 4 8 8 C 1.53004 * 109.46915 * 59.99371 * 7 6 5 9 9 N 1.46905 * 109.46996 * 175.00239 * 8 7 6 10 10 C 1.47961 * 110.99947 * 190.00305 * 9 8 7 11 11 C 1.53938 * 86.17755 * 222.41847 * 10 9 8 12 12 O 1.42903 * 113.72946 * 269.25757 * 11 10 9 13 13 C 1.50701 * 113.73312 * 138.08341 * 11 10 9 14 14 H 1.08002 * 119.99761 * 1.89006 * 13 11 10 15 15 C 1.37871 * 119.99694 * 182.17569 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.48186 * 111.07059 * 90.57002 * 9 8 7 22 22 C 1.53001 * 109.46864 * 300.00075 * 7 6 5 23 23 C 1.52994 * 109.47534 * 59.99426 * 22 7 6 24 24 H 1.08996 * 109.47427 * 59.99778 * 1 2 3 25 25 H 1.09008 * 109.46746 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47259 * 299.99378 * 1 2 3 27 27 H 1.09002 * 109.47389 * 240.00178 * 2 1 3 28 28 H 1.09006 * 109.47640 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47209 * 300.00355 * 3 2 1 30 30 H 1.09007 * 109.47098 * 60.00318 * 3 2 1 31 31 H 1.09002 * 109.46798 * 300.00390 * 4 2 1 32 32 H 1.09003 * 109.46585 * 60.00185 * 5 4 2 33 33 H 1.08990 * 109.47220 * 300.00075 * 5 4 2 34 34 H 1.08997 * 109.47723 * 300.00599 * 6 5 4 35 35 H 1.09004 * 109.46943 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47345 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47228 * 55.00174 * 8 7 6 38 38 H 1.08997 * 109.47288 * 295.00516 * 8 7 6 39 39 H 1.08999 * 113.76238 * 108.09977 * 10 9 8 40 40 H 1.08996 * 113.85716 * 336.74563 * 10 9 8 41 41 H 0.96705 * 114.00014 * 178.10699 * 12 11 10 42 42 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 43 43 H 1.09000 * 113.75993 * 23.23703 * 21 9 8 44 44 H 1.09006 * 113.82361 * 251.80909 * 21 9 8 45 45 H 1.09001 * 109.47230 * 180.02562 * 22 7 6 46 46 H 1.08997 * 109.46978 * 299.99270 * 22 7 6 47 47 H 1.09006 * 109.47153 * 179.97438 * 23 22 7 48 48 H 1.09007 * 109.46947 * 60.00432 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7218 1.2488 6 6 4.0801 -1.4425 2.4983 7 6 3.5696 -2.8849 2.4992 8 6 4.0791 -3.6069 1.2502 9 7 3.6900 -5.0222 1.3098 10 6 4.3625 -5.8022 0.2473 11 6 3.0049 -6.4982 0.0420 12 8 2.8379 -7.6774 0.8318 13 6 2.6421 -6.7049 -1.4060 14 1 3.3278 -6.4011 -2.1831 15 6 1.4324 -7.2765 -1.7387 16 7 0.5974 -7.6465 -0.7924 17 14 0.9793 -7.5256 -3.5338 18 1 1.9832 -8.4089 -4.1797 19 1 -0.3630 -8.1546 -3.6228 20 1 0.9577 -6.2118 -4.2258 21 6 2.3735 -5.2404 0.6655 22 6 2.0396 -2.8844 2.4995 23 6 1.5296 -2.1636 1.2501 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6765 1.9563 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 -0.2075 2.1392 32 1 3.9337 0.3058 1.2486 33 1 3.9330 -1.2358 0.3589 34 1 3.7171 -0.9282 3.3882 35 1 5.1701 -1.4433 2.4979 36 1 3.9333 -3.3985 3.3891 37 1 5.1654 -3.5303 1.2039 38 1 3.6445 -3.1477 0.3623 39 1 5.1444 -6.4653 0.6174 40 1 4.6817 -5.2024 -0.6049 41 1 1.9752 -8.1018 0.7276 42 1 -0.2538 -8.0482 -1.0265 43 1 2.1090 -4.4744 -0.0634 44 1 1.5692 -5.4555 1.3691 45 1 1.6759 -3.9119 2.5005 46 1 1.6766 -2.3701 3.3893 47 1 0.4395 -2.1636 1.2501 48 1 1.8925 -2.6780 0.3602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348195381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:53 Heat of formation + Delta-G solvation = -49.543374 kcal Electronic energy + Delta-G solvation = -24075.217022 eV Core-core repulsion = 20936.660456 eV Total energy + Delta-G solvation = -3138.556566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.95609 -38.30865 -35.46685 -33.81374 -32.04726 -30.76614 -30.16745 -27.69560 -27.16085 -25.57018 -24.95213 -22.79072 -22.21390 -21.80129 -19.80411 -18.52961 -18.26448 -17.08191 -15.99441 -15.21886 -14.98051 -14.69659 -14.47270 -14.13672 -13.69222 -13.65560 -13.54231 -13.15724 -12.92545 -12.33592 -12.28940 -12.20943 -12.12251 -11.92055 -11.53086 -11.47557 -11.28810 -11.10634 -10.97706 -10.86729 -10.85081 -10.70974 -10.52641 -10.44765 -10.14267 -9.95039 -9.87693 -9.59765 -9.55539 -9.21376 -8.60299 -8.09726 -7.66848 -6.22815 -4.32470 3.21798 3.27331 3.29823 4.27482 4.65713 4.76920 4.88282 4.92541 5.01747 5.06669 5.21493 5.33559 5.44608 5.52778 5.60615 5.61297 5.66162 5.74517 5.75839 5.81673 5.82574 5.91832 6.00440 6.00502 6.02295 6.07455 6.11852 6.17740 6.20133 6.29872 6.34251 6.35961 6.41511 6.45698 6.52171 6.59801 6.68721 6.70915 6.81021 6.82958 7.14182 7.31172 7.42501 7.79059 8.04338 8.11533 8.68746 9.37241 9.66340 10.82831 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016496 B = 0.005432 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.994378 B = 5153.121909 C = 6171.848303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.077 4.077 5 C -0.117 4.117 6 C -0.112 4.112 7 C -0.076 4.076 8 C 0.022 3.978 9 N -0.479 5.479 10 C 0.007 3.993 11 C 0.242 3.758 12 O -0.572 6.572 13 C -0.538 4.538 14 H 0.063 0.937 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.005 4.005 22 C -0.115 4.115 23 C -0.121 4.121 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.387 0.613 42 H 0.270 0.730 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 14.843 3.518 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.096 4.096 5 C -0.154 4.154 6 C -0.150 4.150 7 C -0.095 4.095 8 C -0.106 4.106 9 N -0.201 5.201 10 C -0.121 4.121 11 C 0.200 3.800 12 O -0.383 6.383 13 C -0.576 4.576 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.727 3.273 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.201 1.201 21 C -0.134 4.134 22 C -0.152 4.152 23 C -0.158 4.158 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.241 0.759 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.128 14.743 4.430 15.540 hybrid contribution -0.973 0.189 -1.980 2.214 sum 1.155 14.931 2.450 15.175 Atomic orbital electron populations 1.21888 0.95480 1.02147 1.01097 1.21156 0.95656 0.95801 0.98653 1.21887 1.01079 0.96264 1.01199 1.21169 0.95144 0.96085 0.97189 1.21663 0.95370 0.99720 0.98633 1.21553 0.99775 0.95886 0.97789 1.20998 0.95651 0.94131 0.98677 1.22742 0.99139 0.91723 0.97032 1.68490 1.05407 1.06455 1.39770 1.24081 0.99176 0.96249 0.92630 1.19796 0.88913 0.82603 0.88669 1.86045 1.42038 1.41815 1.68409 1.21617 1.02667 1.41190 0.92127 0.91911 1.25026 0.95739 0.94168 0.98033 1.69422 1.09993 1.41851 1.32477 0.86531 0.77677 0.78577 0.84511 1.19989 1.21024 1.20136 1.24764 0.91884 1.00558 0.96168 1.21587 0.95208 1.01412 0.97018 1.21770 1.00062 0.94591 0.99358 0.93168 0.92039 0.93049 0.91286 0.92509 0.93169 0.93026 0.91807 0.92390 0.91830 0.92413 0.92482 0.91122 0.92590 0.93765 0.90967 0.92087 0.75944 0.91953 0.92207 0.91159 0.90599 0.93139 0.92195 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.84 37.15 0.33 -1.29 16 2 C -0.09 -1.06 2.51 -90.62 -0.23 -1.28 16 3 C -0.15 -1.41 8.84 37.16 0.33 -1.08 16 4 C -0.08 -0.92 1.77 -90.62 -0.16 -1.08 16 5 C -0.12 -1.37 4.58 -26.73 -0.12 -1.49 16 6 C -0.11 -1.36 5.45 -26.73 -0.15 -1.51 16 7 C -0.08 -1.12 2.87 -90.62 -0.26 -1.38 16 8 C 0.02 0.38 3.75 -3.82 -0.01 0.37 16 9 N -0.48 -9.95 6.04 -238.04 -1.44 -11.38 16 10 C 0.01 0.16 7.34 -2.76 -0.02 0.14 16 11 C 0.24 6.13 1.40 -90.84 -0.13 6.01 16 12 O -0.57 -15.59 13.48 -35.23 -0.48 -16.07 16 13 C -0.54 -14.39 8.61 -34.44 -0.30 -14.69 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 16 N -0.90 -24.05 11.20 55.43 0.62 -23.43 16 17 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.00 -0.11 5.26 -2.64 -0.01 -0.13 16 22 C -0.11 -1.73 4.90 -26.73 -0.13 -1.86 16 23 C -0.12 -1.72 4.35 -26.74 -0.12 -1.84 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.73 6.43 -51.92 -0.33 0.39 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 33 H 0.06 0.82 6.55 -51.93 -0.34 0.48 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.04 0.77 4.25 -51.93 -0.22 0.55 16 39 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.06 1.28 7.88 -51.93 -0.41 0.87 16 41 H 0.39 10.67 6.61 45.56 0.30 10.97 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.06 1.36 5.78 -51.93 -0.30 1.06 16 44 H 0.07 1.69 7.10 -51.93 -0.37 1.32 16 45 H 0.08 1.34 5.65 -51.93 -0.29 1.05 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.84 6.43 -51.93 -0.33 0.51 16 48 H 0.07 1.16 4.42 -51.92 -0.23 0.93 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -26.71 345.15 -10.00 -36.70 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -7.81 Total: 12.83 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -1.07 Total: -19.30 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.82 Total: -34.81 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.48 Total: -16.07 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.71 -10.00 -36.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.840 kcal (2) G-P(sol) polarization free energy of solvation -26.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds