Wall clock time and date at job start Tue Mar 31 2020 05:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46747 * 2 1 4 4 C 1.53002 * 109.46975 * 240.00149 * 2 1 3 5 5 C 1.52996 * 109.47481 * 119.99816 * 2 1 3 6 6 N 1.46507 * 109.46903 * 54.73334 * 5 2 1 7 7 C 1.46495 * 120.00166 * 274.34192 * 6 5 2 8 8 C 1.50701 * 109.46919 * 269.99956 * 7 6 5 9 9 H 1.07998 * 120.00234 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00184 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99285 * 359.97438 * 10 8 7 12 12 Si 1.86789 * 120.00131 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47458 * 60.00005 * 12 10 8 14 14 H 1.48505 * 109.47218 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47416 * 299.99810 * 12 10 8 16 16 C 1.34775 * 119.99647 * 94.33874 * 6 5 2 17 17 O 1.21284 * 119.99886 * 185.20894 * 16 6 5 18 18 C 1.50698 * 120.00299 * 5.21267 * 16 6 5 19 19 C 1.53788 * 113.61520 * 71.99353 * 18 16 6 20 20 C 1.53949 * 87.02090 * 89.23123 * 19 18 16 21 21 C 1.53005 * 113.53800 * 270.81360 * 20 19 18 22 22 C 1.52994 * 113.74578 * 139.94391 * 20 19 18 23 23 C 1.53777 * 113.61761 * 169.60028 * 18 16 6 24 24 H 1.09005 * 109.46793 * 299.99599 * 1 2 3 25 25 H 1.08997 * 109.47157 * 60.00100 * 1 2 3 26 26 H 1.08997 * 109.46532 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46680 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47210 * 299.99867 * 3 2 1 29 29 H 1.08997 * 109.47031 * 60.00364 * 3 2 1 30 30 H 1.08993 * 109.46991 * 296.90458 * 4 2 1 31 31 H 1.09000 * 109.46661 * 56.90243 * 4 2 1 32 32 H 1.09000 * 109.46918 * 176.89944 * 4 2 1 33 33 H 1.08997 * 109.47341 * 294.73853 * 5 2 1 34 34 H 1.08997 * 109.47516 * 174.73373 * 5 2 1 35 35 H 1.08997 * 109.47024 * 29.99875 * 7 6 5 36 36 H 1.08996 * 109.47172 * 150.00385 * 7 6 5 37 37 H 0.97007 * 119.99207 * 180.02562 * 11 10 8 38 38 H 1.08998 * 112.85053 * 300.80161 * 18 16 6 39 39 H 1.08998 * 113.61334 * 203.75037 * 19 18 16 40 40 H 1.09007 * 113.60966 * 334.65241 * 19 18 16 41 41 H 1.08996 * 109.47396 * 149.32149 * 21 20 19 42 42 H 1.08997 * 109.47032 * 269.32790 * 21 20 19 43 43 H 1.09001 * 109.47032 * 29.32301 * 21 20 19 44 44 H 1.08996 * 109.47090 * 322.40580 * 22 20 19 45 45 H 1.09010 * 109.47163 * 82.40153 * 22 20 19 46 46 H 1.08995 * 109.47533 * 202.40156 * 22 20 19 47 47 H 1.09002 * 113.61386 * 25.34458 * 23 18 16 48 48 H 1.08997 * 113.61751 * 156.25117 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 7 1.4510 -2.0610 1.3143 7 6 0.1351 -2.2535 1.9286 8 6 0.3035 -2.5307 3.4003 9 1 1.2918 -2.5600 3.8347 10 6 -0.8043 -2.7468 4.1923 11 7 -2.0078 -2.7106 3.6634 12 14 -0.5955 -3.0911 6.0163 13 1 0.0883 -1.9418 6.6619 14 1 -1.9295 -3.2861 6.6391 15 1 0.2204 -4.3184 6.1983 16 6 2.1198 -3.1164 0.8090 17 8 1.5938 -4.2088 0.7771 18 6 3.5211 -2.9392 0.2837 19 6 4.5688 -2.7152 1.3869 20 6 4.7262 -4.2459 1.4367 21 6 3.7666 -4.9273 2.4144 22 6 6.1741 -4.7112 1.6037 23 6 4.2370 -4.2656 -0.0212 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.7227 -1.7636 -1.2220 31 1 1.6320 -0.2404 -2.1383 32 1 3.1286 -0.6733 -1.2775 33 1 1.7558 -0.1558 2.1367 34 1 3.1260 -0.8036 1.2033 35 1 -0.4637 -1.3526 1.7947 36 1 -0.3669 -3.0972 1.4551 37 1 -2.7872 -2.8623 4.2207 38 1 3.5803 -2.2144 -0.5283 39 1 5.4624 -2.1955 1.0413 40 1 4.1560 -2.2878 2.3008 41 1 3.5236 -5.9251 2.0491 42 1 4.2393 -5.0039 3.3935 43 1 2.8532 -4.3382 2.4970 44 1 6.8335 -4.0596 1.0305 45 1 6.4495 -4.6707 2.6576 46 1 6.2707 -5.7349 1.2420 47 1 3.5568 -5.0881 -0.2423 48 1 5.0397 -4.1705 -0.7523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352275048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:11 Heat of formation + Delta-G solvation = -32.357562 kcal Electronic energy + Delta-G solvation = -24647.684800 eV Core-core repulsion = 21509.873467 eV Total energy + Delta-G solvation = -3137.811333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62541 -38.10483 -36.59076 -33.79790 -32.35778 -30.74861 -27.95372 -27.19284 -27.03346 -26.76733 -25.54143 -25.43606 -23.82531 -21.71610 -19.28318 -18.35287 -17.41569 -16.59990 -16.21742 -15.43832 -15.18671 -14.50995 -14.37887 -14.06828 -13.87396 -13.74131 -13.49061 -12.97832 -12.70074 -12.49350 -12.44270 -12.20540 -11.94909 -11.70017 -11.55700 -11.37449 -11.27721 -11.26272 -11.13193 -10.95937 -10.80322 -10.79174 -10.53522 -10.45855 -10.37448 -10.14996 -10.06578 -9.80524 -9.61314 -9.46713 -8.73809 -8.38547 -7.52755 -6.01179 -4.05297 3.32496 3.37111 3.38975 3.49194 4.00420 4.46600 4.70889 4.83421 4.92959 5.00610 5.07304 5.10490 5.22314 5.32403 5.47731 5.48369 5.72177 5.73586 5.74993 5.81454 5.82742 5.86592 5.87302 5.97871 6.01300 6.09789 6.15537 6.16876 6.19988 6.23503 6.26956 6.32983 6.36839 6.46098 6.49488 6.55986 6.62579 6.70308 6.80818 6.97856 7.19075 7.51073 7.64632 7.96397 8.28969 8.53292 8.94522 9.20503 9.59626 11.06462 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.008122 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.162419 B = 3446.526460 C = 5088.333339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.143 4.143 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.239 3.761 8 C -0.525 4.525 9 H 0.055 0.945 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.529 3.471 17 O -0.540 6.540 18 C -0.147 4.147 19 C -0.122 4.122 20 C -0.084 4.084 21 C -0.134 4.134 22 C -0.132 4.132 23 C -0.117 4.117 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.081 0.919 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.015 5.025 -7.779 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.006 4.006 6 N -0.321 5.321 7 C 0.120 3.880 8 C -0.564 4.564 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.316 3.684 17 O -0.418 6.418 18 C -0.168 4.168 19 C -0.160 4.160 20 C -0.085 4.085 21 C -0.191 4.191 22 C -0.189 4.189 23 C -0.154 4.154 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.498 4.423 -7.725 15.345 hybrid contribution 0.045 -0.042 1.077 1.079 sum 12.544 4.381 -6.649 14.857 Atomic orbital electron populations 1.22018 0.93923 1.03143 1.00846 1.20996 0.96880 0.95045 0.95893 1.21802 1.00471 0.95452 1.01724 1.22032 0.99957 1.00960 0.97022 1.21559 0.97344 0.84509 0.97151 1.48084 1.21309 1.05530 1.57169 1.19450 0.77981 0.98265 0.92254 1.21423 0.92825 1.48667 0.93438 0.92661 1.24902 0.95120 0.95328 0.98626 1.69924 0.97700 1.49793 1.35933 0.86633 0.77196 0.78877 0.85165 1.20320 1.21242 1.20225 1.19663 0.86339 0.84464 0.77894 1.90653 1.69230 1.25307 1.56654 1.22681 0.93585 1.00349 1.00227 1.23112 0.97734 0.96530 0.98602 1.21828 0.95332 0.95178 0.96113 1.21777 0.99542 1.01161 0.96651 1.21726 0.95146 1.00787 1.01284 1.22923 0.99039 0.97466 0.96019 0.92319 0.93822 0.91108 0.92946 0.92852 0.92471 0.92283 0.93040 0.92854 0.90409 0.91172 0.93928 0.94112 0.92764 0.88197 0.89932 0.90792 0.92573 0.93601 0.90007 0.92990 0.92881 0.92797 0.90052 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.01 37.16 0.26 -2.01 16 2 C -0.09 -1.22 0.85 -154.50 -0.13 -1.35 16 3 C -0.14 -1.55 8.47 37.16 0.31 -1.23 16 4 C -0.14 -1.86 6.88 37.16 0.26 -1.61 16 5 C 0.12 1.94 4.49 -4.04 -0.02 1.92 16 6 N -0.59 -12.08 1.98 -175.07 -0.35 -12.42 16 7 C 0.24 6.08 3.94 -5.20 -0.02 6.06 16 8 C -0.52 -14.58 9.39 -34.44 -0.32 -14.90 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 12 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.53 10.74 3.88 -10.99 -0.04 10.70 16 17 O -0.54 -13.23 13.70 5.55 0.08 -13.15 16 18 C -0.15 -2.27 2.69 -90.96 -0.24 -2.51 16 19 C -0.12 -1.70 5.66 -25.83 -0.15 -1.84 16 20 C -0.08 -1.23 1.39 -153.61 -0.21 -1.44 16 21 C -0.13 -2.39 8.32 37.16 0.31 -2.08 16 22 C -0.13 -1.55 9.18 37.15 0.34 -1.21 16 23 C -0.12 -1.70 6.74 -25.92 -0.17 -1.87 16 24 H 0.06 0.98 7.76 -51.93 -0.40 0.57 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.34 5.84 -51.93 -0.30 1.04 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.91 6.01 -51.93 -0.31 0.60 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.60 6.77 -51.93 -0.35 0.25 16 33 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 34 H 0.07 1.00 5.23 -51.93 -0.27 0.72 16 35 H 0.04 1.08 5.50 -51.93 -0.29 0.80 16 36 H 0.04 1.19 7.36 -51.93 -0.38 0.81 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 1.35 4.65 -51.93 -0.24 1.11 16 39 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 40 H 0.07 1.15 7.58 -51.93 -0.39 0.75 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.04 0.75 8.03 -51.93 -0.42 0.33 16 43 H 0.08 1.78 4.98 -51.93 -0.26 1.52 16 44 H 0.05 0.53 7.96 -51.93 -0.41 0.11 16 45 H 0.05 0.60 8.08 -51.92 -0.42 0.19 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 1.36 7.31 -51.93 -0.38 0.98 16 48 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -30.69 354.52 -7.73 -38.42 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.59 Total: 2.37 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.39 Total: -38.07 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.69 -7.73 -38.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352275048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.064 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds