Wall clock time and date at job start Tue Mar 31 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46992 * 2 1 4 4 C 1.53005 * 109.46919 * 305.65714 * 3 2 1 5 5 C 1.52998 * 109.47343 * 294.50871 * 4 3 2 6 6 C 1.52999 * 109.47664 * 65.65743 * 3 2 1 7 7 N 1.46496 * 109.46842 * 64.99688 * 6 3 2 8 8 C 1.46504 * 120.00109 * 90.00222 * 7 6 3 9 9 C 1.50703 * 109.47026 * 89.99722 * 8 7 6 10 10 H 1.08001 * 119.99973 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00309 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00719 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99648 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47237 * 89.99826 * 13 11 9 15 15 H 1.48495 * 109.47262 * 329.99645 * 13 11 9 16 16 H 1.48503 * 109.46937 * 209.99677 * 13 11 9 17 17 C 1.34777 * 120.00399 * 270.00314 * 7 6 3 18 18 O 1.21280 * 119.99917 * 0.02562 * 17 7 6 19 19 C 1.50701 * 120.00307 * 179.97438 * 17 7 6 20 20 C 1.53005 * 109.47111 * 180.02562 * 19 17 7 21 21 H 1.08997 * 115.54677 * 330.72058 * 20 19 17 22 22 C 1.52998 * 117.49543 * 116.39506 * 20 19 17 23 23 C 1.53001 * 117.49383 * 185.01526 * 20 19 17 24 24 H 1.08994 * 117.50075 * 359.97438 * 23 20 19 25 25 C 1.53005 * 117.49410 * 145.02250 * 23 20 19 26 26 H 1.08993 * 109.46701 * 186.77820 * 1 2 3 27 27 H 1.09000 * 109.46891 * 306.77769 * 1 2 3 28 28 H 1.08995 * 109.46989 * 66.77448 * 1 2 3 29 29 H 1.08999 * 109.47070 * 240.00133 * 2 1 3 30 30 H 1.08998 * 109.47107 * 119.99626 * 2 1 3 31 31 H 1.08998 * 109.47298 * 185.66067 * 3 2 1 32 32 H 1.08998 * 109.47354 * 54.51643 * 4 3 2 33 33 H 1.09006 * 109.46597 * 174.51088 * 4 3 2 34 34 H 1.09002 * 109.47067 * 175.60024 * 5 4 3 35 35 H 1.08999 * 109.47416 * 295.60740 * 5 4 3 36 36 H 1.09002 * 109.46514 * 55.60189 * 5 4 3 37 37 H 1.09005 * 109.46733 * 305.00144 * 6 3 2 38 38 H 1.08997 * 109.47515 * 185.00300 * 6 3 2 39 39 H 1.09003 * 109.46909 * 330.00460 * 8 7 6 40 40 H 1.09003 * 109.47396 * 209.99900 * 8 7 6 41 41 H 0.96993 * 120.00179 * 179.97438 * 12 11 9 42 42 H 1.08999 * 109.46922 * 299.99994 * 19 17 7 43 43 H 1.08998 * 109.47076 * 59.99880 * 19 17 7 44 44 H 1.09002 * 117.49347 * 214.97775 * 22 20 19 45 45 H 1.08996 * 117.50327 * 359.97320 * 22 20 19 46 46 H 1.08999 * 109.47162 * 59.99694 * 25 23 20 47 47 H 1.08997 * 109.46839 * 179.97438 * 25 23 20 48 48 H 1.09000 * 109.46791 * 299.99258 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4172 2.2036 -1.1721 5 6 1.9174 1.6087 -2.4900 6 6 1.6495 2.1216 1.3142 7 7 2.3411 1.4661 2.4269 8 6 3.6578 1.9448 2.8551 9 6 3.4875 3.0027 3.9148 10 1 2.4974 3.2894 4.2374 11 6 4.5954 3.6045 4.4725 12 7 4.4469 4.5281 5.3970 13 14 6.3078 3.1092 3.9140 14 1 6.7240 3.9658 2.7745 15 1 6.2969 1.6872 3.4862 16 1 7.2638 3.2808 5.0373 17 6 1.7660 0.4225 3.0568 18 8 0.6762 0.0258 2.7021 19 6 2.4777 -0.2523 4.2010 20 6 1.6148 -1.3979 4.7339 21 1 0.5385 -1.2672 4.6216 22 6 2.1709 -2.8178 4.6099 23 6 2.1113 -2.1364 5.9785 24 1 3.0527 -1.8063 6.4174 25 6 1.0588 -2.6351 6.9708 26 1 -0.3632 -1.0204 0.1213 27 1 -0.3633 0.6153 0.8231 28 1 -0.3633 0.4052 -0.9443 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.1253 1.4442 -0.1014 32 1 0.3315 2.1193 -1.1242 33 1 1.7029 3.2540 -1.1160 34 1 1.4145 2.0987 -3.3238 35 1 2.9932 1.7628 -2.5731 36 1 1.7006 0.5407 -2.5118 37 1 0.5720 2.0416 1.4583 38 1 1.9341 3.1732 1.2784 39 1 4.1859 2.3682 2.0007 40 1 4.2325 1.1126 3.2615 41 1 5.2264 4.9512 5.7895 42 1 3.4317 -0.6481 3.8527 43 1 2.6534 0.4714 4.9970 44 1 1.4603 -3.6215 4.4165 45 1 3.1513 -2.9359 4.1484 46 1 0.3889 -3.3337 6.4694 47 1 1.5527 -3.1387 7.8017 48 1 0.4850 -1.7885 7.3479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354823684.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:17 Heat of formation + Delta-G solvation = -40.860036 kcal Electronic energy + Delta-G solvation = -23584.618615 eV Core-core repulsion = 20446.438587 eV Total energy + Delta-G solvation = -3138.180028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.64668 -37.73242 -36.55866 -34.74712 -32.45540 -30.94205 -30.20201 -28.71351 -27.59887 -26.76502 -24.01348 -22.98613 -22.54032 -21.06279 -20.00775 -18.79254 -18.07163 -17.06533 -16.41344 -15.65225 -15.45176 -14.97055 -14.53536 -14.31971 -14.02722 -13.62892 -13.35452 -13.00670 -12.81735 -12.72339 -12.58160 -12.28928 -12.08527 -11.99986 -11.82702 -11.69127 -11.37731 -11.22757 -11.08615 -11.05713 -10.93019 -10.89717 -10.65061 -10.26744 -10.06887 -10.05382 -10.00787 -9.72881 -9.60510 -9.47541 -8.91676 -8.72194 -7.66287 -6.22309 -4.23727 3.16262 3.23846 3.25543 3.44079 3.82669 4.07165 4.25434 4.88144 5.07525 5.11084 5.12001 5.12955 5.14400 5.22198 5.42559 5.48235 5.55591 5.65139 5.67499 5.79826 5.84935 5.91394 5.97135 5.97679 6.00013 6.04541 6.08651 6.10969 6.14253 6.15185 6.17924 6.35255 6.38820 6.40324 6.44702 6.48750 6.54387 6.62267 6.69329 6.73834 6.75635 6.93750 7.40607 7.45667 8.17637 8.43803 8.83430 9.02707 9.37569 10.90409 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.007973 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.471797 B = 3510.999954 C = 6036.566077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.104 4.104 4 C -0.120 4.120 5 C -0.150 4.150 6 C 0.122 3.878 7 N -0.590 5.590 8 C 0.209 3.791 9 C -0.540 4.540 10 H 0.078 0.922 11 C 0.076 3.924 12 N -0.891 5.891 13 Si 0.871 3.129 14 H -0.274 1.274 15 H -0.264 1.264 16 H -0.283 1.283 17 C 0.522 3.478 18 O -0.560 6.560 19 C -0.110 4.110 20 C -0.124 4.124 21 H 0.115 0.885 22 C -0.179 4.179 23 C -0.160 4.160 24 H 0.103 0.897 25 C -0.119 4.119 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.027 0.973 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 -10.245 -7.076 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.123 4.123 4 C -0.158 4.158 5 C -0.207 4.207 6 C -0.001 4.001 7 N -0.320 5.320 8 C 0.087 3.913 9 C -0.578 4.578 10 H 0.096 0.904 11 C -0.127 4.127 12 N -0.529 5.529 13 Si 0.697 3.303 14 H -0.200 1.200 15 H -0.189 1.189 16 H -0.209 1.209 17 C 0.311 3.689 18 O -0.441 6.441 19 C -0.149 4.149 20 C -0.143 4.143 21 H 0.133 0.867 22 C -0.216 4.216 23 C -0.178 4.178 24 H 0.121 0.879 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.737 -10.301 -7.131 13.074 hybrid contribution 1.298 0.038 -0.164 1.309 sum -2.439 -10.264 -7.295 12.826 Atomic orbital electron populations 1.21764 0.95779 1.01358 1.00862 1.21451 0.96574 0.95781 1.00857 1.21597 1.00104 0.95846 0.94770 1.21557 1.00869 0.99293 0.94038 1.21780 1.00838 1.01073 0.97023 1.21422 0.97849 0.96209 0.84648 1.47864 1.20782 1.31081 1.32258 1.19780 0.80183 0.95575 0.95735 1.21397 0.95481 1.20308 1.20605 0.90385 1.24878 0.98890 0.94452 0.94512 1.69890 1.30522 1.25700 1.26752 0.86937 0.84784 0.79703 0.78850 1.19954 1.18905 1.20899 1.20303 0.85723 0.79896 0.83011 1.90577 1.21388 1.65335 1.66809 1.21226 0.98184 0.97426 0.98105 1.22188 1.00526 0.91537 1.00009 0.86698 1.23157 1.02175 0.96271 0.99954 1.22411 1.01015 1.04645 0.89732 0.87909 1.21326 0.97598 1.00654 0.98069 0.93991 0.90888 0.94211 0.93541 0.91753 0.91545 0.91523 0.92126 0.93271 0.93065 0.92610 0.90469 0.90653 0.95484 0.94933 0.92385 0.89803 0.87323 0.89285 0.89297 0.92843 0.92558 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.14 37.16 0.30 -1.79 16 2 C -0.11 -1.66 4.81 -26.73 -0.13 -1.79 16 3 C -0.10 -1.57 2.36 -90.62 -0.21 -1.78 16 4 C -0.12 -1.53 5.07 -26.73 -0.14 -1.66 16 5 C -0.15 -1.68 9.77 37.16 0.36 -1.32 16 6 C 0.12 2.17 4.90 -4.04 -0.02 2.15 16 7 N -0.59 -11.73 2.34 -175.06 -0.41 -12.14 16 8 C 0.21 4.54 4.03 -5.19 -0.02 4.52 16 9 C -0.54 -14.05 9.84 -34.44 -0.34 -14.39 16 10 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 13 Si 0.87 19.72 27.47 -169.99 -4.67 15.06 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 C 0.52 10.21 6.22 -10.98 -0.07 10.14 16 18 O -0.56 -11.38 11.33 5.56 0.06 -11.31 16 19 C -0.11 -1.94 4.53 -27.88 -0.13 -2.07 16 20 C -0.12 -1.95 5.14 -90.62 -0.47 -2.41 16 21 H 0.12 1.96 7.30 -51.93 -0.38 1.58 16 22 C -0.18 -2.39 9.82 -26.73 -0.26 -2.65 16 23 C -0.16 -2.15 6.13 -90.62 -0.56 -2.71 16 24 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 25 C -0.12 -1.39 10.19 37.16 0.38 -1.01 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.23 4.86 -51.93 -0.25 0.98 16 28 H 0.04 0.52 6.63 -51.93 -0.34 0.17 16 29 H 0.05 0.64 6.76 -51.93 -0.35 0.29 16 30 H 0.06 1.13 5.57 -51.93 -0.29 0.84 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.83 6.18 -51.93 -0.32 0.51 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.62 6.51 -51.93 -0.34 0.28 16 37 H 0.08 1.41 5.66 -51.93 -0.29 1.11 16 38 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 39 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 40 H 0.03 0.69 5.50 -51.93 -0.29 0.41 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.08 1.40 7.13 -51.93 -0.37 1.02 16 43 H 0.11 2.10 8.00 -51.93 -0.42 1.69 16 44 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 45 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 46 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -27.86 363.45 -8.82 -36.68 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.67 Total: 6.07 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -1.39 Total: -14.83 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.36 Total: -37.13 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.06 Total: -11.31 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.86 -8.82 -36.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354823684.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.183 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds