Wall clock time and date at job start Tue Mar 31 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 C 1.53001 * 109.47132 * 189.35550 * 3 2 1 5 5 C 1.53004 * 109.47157 * 173.10021 * 4 3 2 6 6 C 1.52993 * 109.47179 * 69.35316 * 3 2 1 7 7 N 1.46505 * 109.46932 * 67.21259 * 6 3 2 8 8 C 1.46499 * 119.99750 * 84.20670 * 7 6 3 9 9 C 1.50697 * 109.47306 * 90.00000 * 8 7 6 10 10 H 1.07993 * 120.00233 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99622 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00530 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99679 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47224 * 60.00095 * 13 11 9 15 15 H 1.48497 * 109.47018 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47179 * 300.00449 * 13 11 9 17 17 C 1.34780 * 119.99967 * 264.20209 * 7 6 3 18 18 O 1.21280 * 119.99549 * 182.76093 * 17 7 6 19 19 C 1.50696 * 119.99921 * 2.75980 * 17 7 6 20 20 C 1.52999 * 109.46819 * 189.14655 * 19 17 7 21 21 H 1.08999 * 115.55246 * 29.41615 * 20 19 17 22 22 C 1.53006 * 117.49863 * 243.74803 * 20 19 17 23 23 C 1.53000 * 117.49901 * 175.09080 * 20 19 17 24 24 H 1.08994 * 117.49887 * 214.97787 * 23 20 19 25 25 C 1.52999 * 117.49648 * 359.97438 * 23 20 19 26 26 H 1.08995 * 109.46558 * 307.37116 * 1 2 3 27 27 H 1.08992 * 109.47060 * 67.37722 * 1 2 3 28 28 H 1.08997 * 109.46793 * 187.38012 * 1 2 3 29 29 H 1.09005 * 109.46761 * 240.00280 * 2 1 3 30 30 H 1.08998 * 109.47606 * 120.00578 * 2 1 3 31 31 H 1.08999 * 109.47236 * 309.35098 * 3 2 1 32 32 H 1.09001 * 109.47104 * 293.10038 * 4 3 2 33 33 H 1.09000 * 109.47395 * 53.09765 * 4 3 2 34 34 H 1.08998 * 109.46928 * 64.12581 * 5 4 3 35 35 H 1.08998 * 109.46876 * 184.12509 * 5 4 3 36 36 H 1.08999 * 109.46772 * 304.12474 * 5 4 3 37 37 H 1.08998 * 109.47602 * 187.21276 * 6 3 2 38 38 H 1.09003 * 109.47215 * 307.21409 * 6 3 2 39 39 H 1.09005 * 109.46977 * 210.00135 * 8 7 6 40 40 H 1.09000 * 109.47194 * 329.99310 * 8 7 6 41 41 H 0.96998 * 120.00034 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.47255 * 309.14502 * 19 17 7 43 43 H 1.09000 * 109.46609 * 69.15149 * 19 17 7 44 44 H 1.09003 * 117.49976 * 0.02562 * 22 20 19 45 45 H 1.08998 * 117.49760 * 144.99522 * 22 20 19 46 46 H 1.09000 * 109.47524 * 60.00435 * 25 23 20 47 47 H 1.09002 * 109.47285 * 180.02562 * 25 23 20 48 48 H 1.09002 * 109.47111 * 300.00012 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5519 1.4489 -0.2345 5 6 4.0353 2.8904 -0.4061 6 6 1.7305 2.0929 1.3498 7 7 2.5278 1.4487 2.3965 8 6 3.9046 1.8853 2.6417 9 6 3.9066 2.9871 3.6698 10 1 2.9755 3.3283 4.0975 11 6 5.0973 3.5595 4.0644 12 7 6.2312 3.1444 3.5432 13 14 5.0998 4.9258 5.3383 14 1 4.5063 4.4239 6.6037 15 1 6.4954 5.3682 5.5868 16 1 4.2995 6.0718 4.8367 17 6 1.9947 0.4544 3.1339 18 8 2.6370 -0.0449 4.0334 19 6 0.6005 -0.0369 2.8407 20 6 0.1537 -0.9938 3.9477 21 1 0.5854 -0.8090 4.9314 22 6 -0.1181 -2.4480 3.5574 23 6 -1.2838 -1.5147 3.8936 24 1 -1.7978 -1.6730 4.8416 25 6 -2.1647 -1.0384 2.7369 26 1 -0.3632 0.6238 0.8167 27 1 -0.3633 0.3953 -0.9485 28 1 -0.3633 -1.0191 0.1320 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5468 2.0023 -0.7947 32 1 4.0542 0.9966 0.6207 33 1 3.7825 0.8789 -1.1345 34 1 3.8713 3.4413 0.5201 35 1 5.0987 2.8909 -0.6457 36 1 3.4804 3.3659 -1.2148 37 1 1.9765 3.1539 1.3069 38 1 0.6707 1.9745 1.5756 39 1 4.4925 1.0442 3.0093 40 1 4.3396 2.2542 1.7128 41 1 7.0688 3.5469 3.8211 42 1 -0.0820 0.8118 2.7967 43 1 0.5931 -0.5592 1.8841 44 1 0.0219 -2.7231 2.5119 45 1 0.1348 -3.2199 4.2842 46 1 -1.7144 -1.3371 1.7902 47 1 -3.1546 -1.4859 2.8258 48 1 -2.2529 0.0475 2.7707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354823685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:19 Heat of formation + Delta-G solvation = -21.456849 kcal Electronic energy + Delta-G solvation = -24277.387557 eV Core-core repulsion = 21140.048914 eV Total energy + Delta-G solvation = -3137.338643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88388 -37.75881 -36.77184 -33.82121 -32.44951 -32.18368 -29.57390 -28.22458 -28.11743 -26.06233 -24.91022 -22.91062 -21.64574 -21.34775 -20.03894 -19.51198 -17.82540 -16.73618 -16.39637 -15.73530 -15.57097 -14.90901 -14.50895 -14.10209 -14.00606 -13.76879 -13.34095 -13.15995 -12.89330 -12.71155 -12.37177 -12.33302 -12.14257 -12.00136 -11.51845 -11.38912 -11.32828 -11.23875 -11.06957 -10.92606 -10.82502 -10.65224 -10.53473 -10.21100 -10.15587 -10.07141 -9.93931 -9.76697 -9.58605 -9.46096 -8.72315 -8.35065 -7.52403 -5.98779 -4.02182 3.34045 3.38629 3.41451 3.55296 3.83613 4.10428 4.48965 4.79252 4.89593 4.96163 5.02665 5.07809 5.12708 5.27622 5.34227 5.38428 5.44386 5.54009 5.66358 5.67299 5.74041 5.78033 5.83914 5.84214 5.86393 5.94208 5.99437 6.03250 6.05376 6.09613 6.18309 6.23754 6.31668 6.32558 6.40154 6.47308 6.56849 6.59571 6.83654 6.88195 7.24442 7.52766 7.66001 7.98733 8.32524 8.54377 8.97596 9.22606 9.62197 11.08730 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.006118 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.138187 B = 4575.715902 C = 5777.988459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.130 4.130 3 C -0.103 4.103 4 C -0.126 4.126 5 C -0.155 4.155 6 C 0.111 3.889 7 N -0.592 5.592 8 C 0.229 3.771 9 C -0.523 4.523 10 H 0.054 0.946 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.505 3.495 18 O -0.542 6.542 19 C -0.133 4.133 20 C -0.127 4.127 21 H 0.113 0.887 22 C -0.175 4.175 23 C -0.161 4.161 24 H 0.100 0.900 25 C -0.123 4.123 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.059 0.941 41 H 0.262 0.738 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 -5.905 -8.686 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.167 4.167 3 C -0.122 4.122 4 C -0.164 4.164 5 C -0.212 4.212 6 C -0.013 4.013 7 N -0.323 5.323 8 C 0.110 3.890 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.292 3.708 18 O -0.420 6.420 19 C -0.172 4.172 20 C -0.146 4.146 21 H 0.131 0.869 22 C -0.212 4.212 23 C -0.179 4.179 24 H 0.118 0.882 25 C -0.180 4.180 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.480 -6.117 -8.209 16.927 hybrid contribution 0.103 0.834 0.744 1.122 sum -13.377 -5.283 -7.465 16.204 Atomic orbital electron populations 1.22122 0.96350 1.01439 1.02036 1.21795 0.95285 0.97346 1.02290 1.21637 0.96854 0.95894 0.97831 1.21752 0.94957 0.97698 1.01949 1.21880 1.00478 0.96693 1.02116 1.21561 0.94937 0.97991 0.86843 1.48161 1.16342 1.34263 1.33583 1.19673 0.76134 0.95510 0.97641 1.21431 0.92869 1.18453 1.23436 0.92769 1.24893 0.95401 0.97214 0.96480 1.69914 0.97638 1.42473 1.43402 0.86635 0.76889 0.82118 0.82217 1.20317 1.21259 1.20349 1.20293 0.88057 0.80253 0.82244 1.90653 1.62821 1.57888 1.30617 1.21986 0.95488 0.99573 1.00146 1.22157 0.96864 0.94661 1.00877 0.86892 1.23111 1.02580 0.93646 1.01822 1.22396 0.90382 1.04840 1.00280 0.88189 1.21387 0.98694 1.01033 0.96878 0.91747 0.92807 0.92873 0.92208 0.91248 0.90947 0.89899 0.93241 0.90619 0.93048 0.93921 0.90202 0.91443 0.94523 0.92365 0.92808 0.89669 0.87078 0.89139 0.89121 0.92351 0.92595 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 7.87 37.16 0.29 -1.31 16 2 C -0.13 -1.60 4.81 -26.73 -0.13 -1.73 16 3 C -0.10 -1.39 2.16 -90.62 -0.20 -1.59 16 4 C -0.13 -1.98 4.85 -26.73 -0.13 -2.11 16 5 C -0.15 -2.48 8.70 37.16 0.32 -2.16 16 6 C 0.11 1.77 4.88 -4.04 -0.02 1.75 16 7 N -0.59 -12.15 1.98 -175.06 -0.35 -12.50 16 8 C 0.23 5.81 3.70 -5.20 -0.02 5.79 16 9 C -0.52 -14.72 9.39 -34.44 -0.32 -15.04 16 10 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 13 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.50 10.48 6.55 -10.99 -0.07 10.40 16 18 O -0.54 -13.85 15.28 5.56 0.08 -13.77 16 19 C -0.13 -2.00 2.54 -27.89 -0.07 -2.07 16 20 C -0.13 -1.88 5.34 -90.62 -0.48 -2.37 16 21 H 0.11 1.97 7.47 -51.93 -0.39 1.59 16 22 C -0.17 -2.18 9.83 -26.69 -0.26 -2.45 16 23 C -0.16 -1.85 6.41 -90.58 -0.58 -2.43 16 24 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.12 -1.17 9.20 37.16 0.34 -0.82 16 26 H 0.06 0.64 4.51 -51.93 -0.23 0.40 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.48 7.15 -51.93 -0.37 0.11 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.07 1.02 4.96 -51.93 -0.26 0.76 16 31 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 32 H 0.08 1.58 5.18 -51.93 -0.27 1.31 16 33 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.07 1.42 5.55 -51.93 -0.29 1.13 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.34 7.05 -51.93 -0.37 0.98 16 38 H 0.07 0.91 4.51 -51.93 -0.23 0.68 16 39 H 0.04 1.08 7.46 -51.93 -0.39 0.69 16 40 H 0.06 1.43 3.35 -51.93 -0.17 1.25 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.09 1.16 5.92 -51.93 -0.31 0.86 16 43 H 0.11 1.46 2.79 -51.93 -0.15 1.32 16 44 H 0.09 1.05 7.94 -51.93 -0.41 0.64 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.53 6.87 -51.93 -0.36 0.17 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.55 7.84 -51.93 -0.41 0.15 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -31.64 350.88 -8.62 -40.27 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.94 Total: 3.83 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.42 Total: -14.47 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.39 Total: -38.12 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.08 Total: -13.77 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.64 -8.62 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354823685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.811 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds