Wall clock time and date at job start Tue Mar 31 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46845 * 2 1 4 4 C 1.52999 * 109.47412 * 64.99712 * 3 2 1 5 5 C 1.52996 * 109.46966 * 186.20401 * 4 3 2 6 6 C 1.53007 * 109.46678 * 184.99880 * 3 2 1 7 7 N 1.46501 * 109.47203 * 63.30316 * 6 3 2 8 8 C 1.46498 * 120.00085 * 263.94767 * 7 6 3 9 9 C 1.50696 * 109.47144 * 270.00123 * 8 7 6 10 10 H 1.08002 * 119.99992 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00031 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00067 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99791 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46983 * 90.00415 * 13 11 9 15 15 H 1.48504 * 109.47051 * 209.99693 * 13 11 9 16 16 H 1.48495 * 109.47405 * 329.99797 * 13 11 9 17 17 C 1.34777 * 120.00032 * 83.94475 * 7 6 3 18 18 O 1.21280 * 120.00227 * 355.08655 * 17 7 6 19 19 C 1.50698 * 120.00005 * 175.07992 * 17 7 6 20 20 C 1.53001 * 109.47101 * 180.02562 * 19 17 7 21 21 H 1.09001 * 115.55094 * 29.33734 * 20 19 17 22 22 C 1.53072 * 117.51444 * 243.60793 * 20 19 17 23 23 C 1.52997 * 59.98472 * 252.52385 * 22 20 19 24 24 H 1.08998 * 117.49647 * 107.50102 * 23 22 20 25 25 C 1.53001 * 117.50153 * 252.49828 * 23 22 20 26 26 H 1.09007 * 109.47253 * 60.00490 * 1 2 3 27 27 H 1.09006 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47176 * 300.00243 * 1 2 3 29 29 H 1.08997 * 109.47176 * 239.99757 * 2 1 3 30 30 H 1.09000 * 109.46938 * 119.99772 * 2 1 3 31 31 H 1.08998 * 109.46765 * 304.99600 * 3 2 1 32 32 H 1.08992 * 109.47128 * 306.20768 * 4 3 2 33 33 H 1.09000 * 109.47001 * 66.20476 * 4 3 2 34 34 H 1.09000 * 109.47222 * 63.81837 * 5 4 3 35 35 H 1.08998 * 109.47115 * 183.82046 * 5 4 3 36 36 H 1.09000 * 109.47172 * 303.81826 * 5 4 3 37 37 H 1.08997 * 109.47361 * 303.30070 * 6 3 2 38 38 H 1.09002 * 109.46682 * 183.30373 * 6 3 2 39 39 H 1.09006 * 109.46850 * 29.99718 * 8 7 6 40 40 H 1.08994 * 109.47353 * 149.99865 * 8 7 6 41 41 H 0.97001 * 119.99938 * 180.02562 * 12 11 9 42 42 H 1.09005 * 109.46944 * 60.00405 * 19 17 7 43 43 H 1.08995 * 109.47606 * 300.00271 * 19 17 7 44 44 H 1.09004 * 117.50775 * 145.04818 * 22 20 19 45 45 H 1.08995 * 117.49797 * 0.02562 * 22 20 19 46 46 H 1.09001 * 109.47264 * 128.75073 * 25 23 22 47 47 H 1.09002 * 109.46698 * 8.74799 * 25 23 22 48 48 H 1.08999 * 109.47137 * 248.75248 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0081 3.6091 1.2438 6 6 3.5648 1.4443 -0.1257 7 7 3.9494 0.8605 -1.4131 8 6 4.3158 -0.5556 -1.4950 9 6 5.7985 -0.7046 -1.2703 10 1 6.4071 0.1683 -1.0855 11 6 6.3781 -1.9552 -1.3008 12 7 5.6370 -3.0181 -1.5253 13 14 8.2162 -2.1397 -1.0230 14 1 8.4816 -2.3249 0.4264 15 1 8.7138 -3.3214 -1.7721 16 1 8.9142 -0.9198 -1.5022 17 6 3.9660 1.6260 -2.5222 18 8 3.5778 2.7740 -2.4726 19 6 4.4671 1.0557 -3.8240 20 6 4.3808 2.1243 -4.9157 21 1 4.4812 3.1545 -4.5741 22 6 3.4394 1.8581 -6.0929 23 6 4.9543 1.7770 -6.2910 24 1 5.3930 0.7873 -6.4180 25 6 5.6247 2.9024 -7.0815 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6053 1.9815 -0.8419 32 1 0.5591 2.0285 1.4507 33 1 2.1571 1.6560 2.1404 34 1 1.4350 4.0945 0.4538 35 1 1.7820 4.0818 2.1996 36 1 3.0730 3.7071 1.0329 37 1 3.9968 0.8559 0.6837 38 1 3.9330 2.4686 -0.0668 39 1 3.7747 -1.1156 -0.7322 40 1 4.0572 -0.9414 -2.4810 41 1 6.0448 -3.8980 -1.5464 42 1 3.8548 0.1987 -4.1048 43 1 5.5034 0.7391 -3.7071 44 1 2.9203 2.7133 -6.5258 45 1 2.8812 0.9219 -6.0893 46 1 6.4661 3.2959 -6.5111 47 1 4.9033 3.6994 -7.2618 48 1 5.9824 2.5136 -8.0349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354823686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:21 Heat of formation + Delta-G solvation = -51.307150 kcal Electronic energy + Delta-G solvation = -23353.454937 eV Core-core repulsion = 20214.821888 eV Total energy + Delta-G solvation = -3138.633049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.40464 -37.63584 -36.53682 -34.48671 -32.43722 -31.49626 -30.24857 -28.37953 -27.23843 -26.47375 -23.88869 -23.05194 -22.20887 -21.05471 -20.03801 -19.48163 -18.17066 -16.64017 -16.02420 -15.78551 -14.86280 -14.60154 -14.42878 -14.27177 -13.89404 -13.70894 -13.64897 -13.15147 -12.96993 -12.61401 -12.41704 -12.17754 -12.09386 -11.79250 -11.60801 -11.58023 -11.44555 -11.13384 -11.07639 -11.01414 -10.94775 -10.85840 -10.62213 -10.34500 -10.17841 -10.03374 -9.88142 -9.69850 -9.64900 -9.43261 -8.88634 -8.54151 -7.61744 -6.18249 -4.25549 3.21896 3.29425 3.32473 3.51967 3.92667 4.13796 4.33693 4.94877 5.10702 5.13663 5.17344 5.19669 5.20025 5.30094 5.48114 5.52377 5.59947 5.64577 5.72716 5.83322 5.90523 5.91819 5.96894 5.99295 6.05923 6.09241 6.14416 6.16492 6.17293 6.19862 6.27754 6.36813 6.42405 6.42605 6.48004 6.51395 6.64470 6.67582 6.76212 6.85346 6.90006 7.20708 7.61041 7.77261 8.07402 8.42096 8.81173 9.11568 9.42724 10.88026 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.007398 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.376124 B = 3784.113161 C = 6070.942293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.152 4.152 6 C 0.127 3.873 7 N -0.595 5.595 8 C 0.236 3.764 9 C -0.537 4.537 10 H 0.060 0.940 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.519 3.481 18 O -0.575 6.575 19 C -0.105 4.105 20 C -0.126 4.126 21 H 0.113 0.887 22 C -0.178 4.178 23 C -0.161 4.161 24 H 0.103 0.897 25 C -0.119 4.119 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.265 0.735 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 6.967 -1.906 9.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.121 4.121 4 C -0.154 4.154 5 C -0.209 4.209 6 C 0.003 3.997 7 N -0.324 5.324 8 C 0.116 3.884 9 C -0.576 4.576 10 H 0.079 0.921 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.307 3.693 18 O -0.456 6.456 19 C -0.145 4.145 20 C -0.145 4.145 21 H 0.131 0.869 22 C -0.215 4.215 23 C -0.179 4.179 24 H 0.121 0.879 25 C -0.176 4.176 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.001 7.322 -1.887 9.653 hybrid contribution 1.068 -0.505 0.213 1.200 sum -4.933 6.817 -1.674 8.580 Atomic orbital electron populations 1.21811 0.96737 1.00952 1.01169 1.21629 0.94916 0.96545 1.02797 1.21576 0.96682 0.96007 0.97800 1.21548 1.00825 0.95505 0.97526 1.21806 1.02123 0.96257 1.00717 1.21360 0.93296 0.98836 0.86185 1.48190 1.64836 1.12820 1.06590 1.19485 0.95619 0.74845 0.98446 1.21525 0.93198 0.93032 1.49833 0.92147 1.24930 0.98319 0.95675 0.94830 1.69919 1.35692 0.98525 1.48816 0.86554 0.85130 0.77801 0.78359 1.20556 1.21079 1.19768 1.20397 0.77557 0.85497 0.85808 1.90560 1.50008 1.18823 1.86244 1.21178 1.04250 0.97497 0.91545 1.22225 1.03343 1.00633 0.88264 0.86901 1.23166 0.92256 1.02629 1.03432 1.22412 0.95694 1.00384 0.99413 0.87856 1.21325 1.00207 0.96966 0.99112 0.93247 0.93217 0.93037 0.90973 0.92177 0.90968 0.92064 0.92190 0.92914 0.93482 0.92306 0.90693 0.91378 0.94191 0.94659 0.92565 0.89408 0.87635 0.89328 0.89132 0.92314 0.92847 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.68 37.16 0.36 -1.64 16 2 C -0.12 -1.93 4.71 -26.73 -0.13 -2.05 16 3 C -0.10 -1.63 2.02 -90.62 -0.18 -1.81 16 4 C -0.12 -1.56 5.28 -26.73 -0.14 -1.70 16 5 C -0.15 -1.98 9.77 37.16 0.36 -1.62 16 6 C 0.13 2.35 4.61 -4.04 -0.02 2.33 16 7 N -0.59 -12.32 2.14 -175.06 -0.37 -12.69 16 8 C 0.24 5.45 3.92 -5.20 -0.02 5.43 16 9 C -0.54 -13.72 9.15 -34.44 -0.32 -14.03 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -24.20 13.29 55.43 0.74 -23.47 16 13 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C 0.52 10.78 7.61 -10.99 -0.08 10.69 16 18 O -0.57 -12.79 15.13 5.56 0.08 -12.70 16 19 C -0.11 -1.96 4.65 -27.88 -0.13 -2.09 16 20 C -0.13 -2.07 5.14 -90.58 -0.47 -2.53 16 21 H 0.11 2.00 7.31 -51.93 -0.38 1.62 16 22 C -0.18 -2.51 9.83 -26.70 -0.26 -2.78 16 23 C -0.16 -2.24 6.12 -90.62 -0.55 -2.80 16 24 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 25 C -0.12 -1.41 10.19 37.16 0.38 -1.03 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 29 H 0.07 1.31 5.96 -51.93 -0.31 1.00 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.30 7.97 -51.93 -0.41 0.88 16 32 H 0.06 0.75 6.30 -51.93 -0.33 0.43 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.83 6.38 -51.93 -0.33 0.49 16 37 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 38 H 0.07 1.28 5.93 -51.93 -0.31 0.98 16 39 H 0.04 0.97 6.62 -51.93 -0.34 0.62 16 40 H 0.04 0.85 6.47 -51.93 -0.34 0.51 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.09 1.60 6.99 -51.93 -0.36 1.24 16 43 H 0.11 2.08 7.91 -51.93 -0.41 1.67 16 44 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 45 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -27.28 375.22 -9.08 -36.36 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.87 Total: 5.49 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.30 Total: -14.01 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.36 Total: -36.16 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.28 -9.08 -36.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354823686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.944 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds