Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46845 * 2 1 4 4 C 1.52999 * 109.47412 * 64.99712 * 3 2 1 5 5 C 1.52996 * 109.46966 * 186.20401 * 4 3 2 6 6 C 1.53007 * 109.46678 * 184.99880 * 3 2 1 7 7 N 1.46501 * 109.47203 * 63.30316 * 6 3 2 8 8 C 1.46498 * 120.00085 * 263.94767 * 7 6 3 9 9 C 1.50696 * 109.47144 * 270.00123 * 8 7 6 10 10 H 1.08002 * 119.99992 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00031 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00067 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99791 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46983 * 90.00415 * 13 11 9 15 15 H 1.48504 * 109.47051 * 209.99693 * 13 11 9 16 16 H 1.48495 * 109.47405 * 329.99797 * 13 11 9 17 17 C 1.34777 * 120.00032 * 83.94475 * 7 6 3 18 18 O 1.21280 * 120.00227 * 355.08655 * 17 7 6 19 19 C 1.50698 * 120.00005 * 175.07992 * 17 7 6 20 20 C 1.53001 * 109.47101 * 180.02562 * 19 17 7 21 21 H 1.09001 * 115.55094 * 29.33734 * 20 19 17 22 22 C 1.53072 * 117.51444 * 243.60793 * 20 19 17 23 23 C 1.52997 * 59.98472 * 252.52385 * 22 20 19 24 24 H 1.08998 * 117.49647 * 107.50102 * 23 22 20 25 25 C 1.53001 * 117.50153 * 252.49828 * 23 22 20 26 26 H 1.09007 * 109.47253 * 60.00490 * 1 2 3 27 27 H 1.09006 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47176 * 300.00243 * 1 2 3 29 29 H 1.08997 * 109.47176 * 239.99757 * 2 1 3 30 30 H 1.09000 * 109.46938 * 119.99772 * 2 1 3 31 31 H 1.08998 * 109.46765 * 304.99600 * 3 2 1 32 32 H 1.08992 * 109.47128 * 306.20768 * 4 3 2 33 33 H 1.09000 * 109.47001 * 66.20476 * 4 3 2 34 34 H 1.09000 * 109.47222 * 63.81837 * 5 4 3 35 35 H 1.08998 * 109.47115 * 183.82046 * 5 4 3 36 36 H 1.09000 * 109.47172 * 303.81826 * 5 4 3 37 37 H 1.08997 * 109.47361 * 303.30070 * 6 3 2 38 38 H 1.09002 * 109.46682 * 183.30373 * 6 3 2 39 39 H 1.09006 * 109.46850 * 29.99718 * 8 7 6 40 40 H 1.08994 * 109.47353 * 149.99865 * 8 7 6 41 41 H 0.97001 * 119.99938 * 180.02562 * 12 11 9 42 42 H 1.09005 * 109.46944 * 60.00405 * 19 17 7 43 43 H 1.08995 * 109.47606 * 300.00271 * 19 17 7 44 44 H 1.09004 * 117.50775 * 145.04818 * 22 20 19 45 45 H 1.08995 * 117.49797 * 0.02562 * 22 20 19 46 46 H 1.09001 * 109.47264 * 128.75073 * 25 23 22 47 47 H 1.09002 * 109.46698 * 8.74799 * 25 23 22 48 48 H 1.08999 * 109.47137 * 248.75248 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1266 1.3073 5 6 2.0081 3.6091 1.2438 6 6 3.5648 1.4443 -0.1257 7 7 3.9494 0.8605 -1.4131 8 6 4.3158 -0.5556 -1.4950 9 6 5.7985 -0.7046 -1.2703 10 1 6.4071 0.1683 -1.0855 11 6 6.3781 -1.9552 -1.3008 12 7 5.6370 -3.0181 -1.5253 13 14 8.2162 -2.1397 -1.0230 14 1 8.4816 -2.3249 0.4264 15 1 8.7138 -3.3214 -1.7721 16 1 8.9142 -0.9198 -1.5022 17 6 3.9660 1.6260 -2.5222 18 8 3.5778 2.7740 -2.4726 19 6 4.4671 1.0557 -3.8240 20 6 4.3808 2.1243 -4.9157 21 1 4.4812 3.1545 -4.5741 22 6 3.4394 1.8581 -6.0929 23 6 4.9543 1.7770 -6.2910 24 1 5.3930 0.7873 -6.4180 25 6 5.6247 2.9024 -7.0815 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6053 1.9815 -0.8419 32 1 0.5591 2.0285 1.4507 33 1 2.1571 1.6560 2.1404 34 1 1.4350 4.0945 0.4538 35 1 1.7820 4.0818 2.1996 36 1 3.0730 3.7071 1.0329 37 1 3.9968 0.8559 0.6837 38 1 3.9330 2.4686 -0.0668 39 1 3.7747 -1.1156 -0.7322 40 1 4.0572 -0.9414 -2.4810 41 1 6.0448 -3.8980 -1.5464 42 1 3.8548 0.1987 -4.1048 43 1 5.5034 0.7391 -3.7071 44 1 2.9203 2.7133 -6.5258 45 1 2.8812 0.9219 -6.0893 46 1 6.4661 3.2959 -6.5111 47 1 4.9033 3.6994 -7.2618 48 1 5.9824 2.5136 -8.0349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354823686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -62.279590 kcal Electronic energy + Delta-G solvation = -23353.930738 eV Core-core repulsion = 20214.821888 eV Total energy + Delta-G solvation = -3139.108850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02265 -38.90428 -37.92039 -36.22394 -34.36682 -32.64920 -31.61461 -29.84676 -28.78915 -27.85829 -25.34858 -24.79810 -23.44479 -22.29984 -21.26856 -20.79731 -19.80795 -18.62260 -17.66644 -17.38227 -16.51505 -16.13962 -15.91639 -15.51496 -15.23603 -15.01070 -14.90415 -14.46213 -14.30445 -14.06084 -13.83807 -13.70273 -13.40117 -13.33416 -12.99361 -12.88288 -12.81734 -12.67823 -12.66232 -12.34561 -12.24390 -12.17612 -12.10869 -11.97988 -11.72883 -11.44474 -11.32414 -11.21532 -10.89263 -10.79411 -10.57680 -10.41129 -9.36237 -8.19429 -6.34003 1.40233 1.42733 1.51764 1.81809 2.32011 2.45985 2.88757 3.10427 3.66049 3.82772 3.91290 3.95804 4.00181 4.04936 4.18200 4.37554 4.41932 4.46803 4.47665 4.59156 4.61093 4.68332 4.75032 4.80094 4.87975 4.88859 4.93969 4.95619 4.97613 4.99279 5.00736 5.09166 5.14464 5.20921 5.21134 5.26362 5.30947 5.35606 5.43476 5.49341 5.49762 5.55249 5.68152 5.92386 6.08264 6.60700 6.84251 7.33105 7.45469 8.85481 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.007398 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.376124 B = 3784.113161 C = 6070.942293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.091 4.091 4 C -0.110 4.110 5 C -0.149 4.149 6 C 0.123 3.877 7 N -0.596 5.596 8 C 0.255 3.745 9 C -0.546 4.546 10 H 0.050 0.950 11 C 0.024 3.976 12 N -0.918 5.918 13 Si 0.953 3.047 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.272 1.272 17 C 0.512 3.488 18 O -0.590 6.590 19 C -0.096 4.096 20 C -0.150 4.150 21 H 0.098 0.902 22 C -0.167 4.167 23 C -0.148 4.148 24 H 0.103 0.897 25 C -0.118 4.118 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.267 0.733 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 7.362 -1.950 9.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.110 4.110 4 C -0.148 4.148 5 C -0.207 4.207 6 C 0.001 3.999 7 N -0.326 5.326 8 C 0.134 3.866 9 C -0.585 4.585 10 H 0.068 0.932 11 C -0.176 4.176 12 N -0.557 5.557 13 Si 0.778 3.222 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.197 1.197 17 C 0.302 3.698 18 O -0.473 6.473 19 C -0.136 4.136 20 C -0.168 4.168 21 H 0.116 0.884 22 C -0.204 4.204 23 C -0.166 4.166 24 H 0.122 0.878 25 C -0.175 4.175 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.112 0.888 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.234 7.727 -1.924 10.113 hybrid contribution 1.127 -0.613 0.237 1.305 sum -5.107 7.114 -1.687 8.919 Atomic orbital electron populations 1.21757 0.94434 1.01798 1.02020 1.21574 0.96941 0.95875 1.01306 1.21457 0.94434 0.96327 0.98792 1.21530 1.02051 0.95400 0.95846 1.21780 1.00956 0.96131 1.01798 1.21498 0.95283 0.98115 0.85046 1.48194 1.64774 1.12001 1.07592 1.19107 0.94347 0.75925 0.97205 1.21693 0.94216 0.92819 1.49778 0.93160 1.25599 1.02129 0.95366 0.94543 1.70004 1.37285 0.98924 1.49513 0.85636 0.80467 0.77734 0.78348 1.20083 1.20512 1.19661 1.20788 0.77248 0.85319 0.86436 1.90538 1.50788 1.19403 1.86570 1.21083 1.02926 0.98208 0.91364 1.22064 1.06995 0.98968 0.88809 0.88408 1.23254 0.92588 1.03331 1.01208 1.22529 0.95807 1.01161 0.97095 0.87841 1.21356 1.00171 0.96413 0.99548 0.93449 0.92433 0.91065 0.93897 0.92236 0.92878 0.90155 0.91404 0.93524 0.91114 0.93865 0.91110 0.91887 0.95365 0.95836 0.92341 0.89403 0.89222 0.87807 0.88804 0.92501 0.92075 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.68 71.98 0.70 -2.93 16 2 C -0.12 -3.79 4.71 30.59 0.14 -3.64 16 3 C -0.09 -2.92 2.02 -10.79 -0.02 -2.94 16 4 C -0.11 -2.80 5.28 30.59 0.16 -2.64 16 5 C -0.15 -3.72 9.77 71.98 0.70 -3.02 16 6 C 0.12 4.68 4.61 86.38 0.40 5.08 16 7 N -0.60 -25.57 2.14 -826.16 -1.76 -27.33 16 8 C 0.26 12.18 3.92 85.63 0.34 12.52 16 9 C -0.55 -28.43 9.15 25.60 0.23 -28.20 16 10 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 11 C 0.02 1.26 5.46 84.65 0.46 1.73 16 12 N -0.92 -50.21 13.29 21.45 0.28 -49.93 16 13 Si 0.95 41.73 29.54 68.60 2.03 43.76 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 C 0.51 22.00 7.61 87.66 0.67 22.67 16 18 O -0.59 -26.94 15.13 -3.03 -0.05 -26.98 16 19 C -0.10 -3.69 4.65 29.85 0.14 -3.55 16 20 C -0.15 -4.94 5.14 -10.77 -0.06 -4.99 16 21 H 0.10 3.53 7.31 -2.39 -0.02 3.52 16 22 C -0.17 -4.53 9.83 30.62 0.30 -4.23 16 23 C -0.15 -3.95 6.12 -10.79 -0.07 -4.02 16 24 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 25 C -0.12 -2.56 10.19 71.98 0.73 -1.83 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.07 1.53 6.44 -2.39 -0.02 1.51 16 29 H 0.04 1.60 5.96 -2.39 -0.01 1.58 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.92 7.97 -2.39 -0.02 1.91 16 32 H 0.08 1.76 6.30 -2.39 -0.02 1.75 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.20 6.38 -2.39 -0.02 1.18 16 37 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 38 H 0.06 2.44 5.93 -2.39 -0.01 2.43 16 39 H 0.03 1.42 6.62 -2.38 -0.02 1.40 16 40 H 0.02 1.18 6.47 -2.39 -0.02 1.16 16 41 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.09 3.31 6.99 -2.38 -0.02 3.29 16 43 H 0.09 3.68 7.91 -2.39 -0.02 3.66 16 44 H 0.10 2.50 8.05 -2.38 -0.02 2.48 16 45 H 0.09 2.48 8.03 -2.39 -0.02 2.46 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.06 1.23 7.90 -2.39 -0.02 1.21 16 48 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -58.22 375.22 6.23 -51.99 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.90 Total: 28.48 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 4.83 Total: -19.99 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.48 Total: -77.26 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -58.22 6.23 -51.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354823686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.289 kcal (2) G-P(sol) polarization free energy of solvation -58.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds