Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.52995 * 109.47152 * 170.62510 * 3 2 1 5 5 C 1.53004 * 109.47216 * 185.00344 * 4 3 2 6 6 C 1.53001 * 109.47472 * 290.63111 * 3 2 1 7 7 N 1.46499 * 109.46667 * 293.38254 * 6 3 2 8 8 C 1.46500 * 120.00205 * 274.70174 * 7 6 3 9 9 C 1.50702 * 109.46738 * 273.71575 * 8 7 6 10 10 H 1.08002 * 120.00615 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00002 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00101 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99564 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47564 * 89.99894 * 13 11 9 15 15 H 1.48503 * 109.47118 * 209.99620 * 13 11 9 16 16 H 1.48502 * 109.47402 * 329.99402 * 13 11 9 17 17 C 1.34777 * 119.99836 * 94.70252 * 7 6 3 18 18 O 1.21292 * 119.99548 * 185.18056 * 17 7 6 19 19 C 1.50694 * 120.00387 * 5.18179 * 17 7 6 20 20 C 1.52997 * 109.47574 * 172.17497 * 19 17 7 21 21 H 1.09002 * 115.56283 * 330.69083 * 20 19 17 22 22 C 1.53005 * 117.50098 * 116.37496 * 20 19 17 23 23 C 1.53000 * 117.50167 * 184.99793 * 20 19 17 24 24 H 1.09009 * 117.49443 * 145.02150 * 23 20 19 25 25 C 1.53000 * 117.51899 * 359.97438 * 23 20 19 26 26 H 1.09003 * 109.47308 * 51.23741 * 1 2 3 27 27 H 1.09003 * 109.46894 * 171.23538 * 1 2 3 28 28 H 1.08998 * 109.46794 * 291.23632 * 1 2 3 29 29 H 1.09005 * 109.46953 * 240.00678 * 2 1 3 30 30 H 1.08997 * 109.47341 * 120.00630 * 2 1 3 31 31 H 1.09001 * 109.46678 * 50.62483 * 3 2 1 32 32 H 1.09002 * 109.47465 * 305.00409 * 4 3 2 33 33 H 1.09003 * 109.47104 * 65.00505 * 4 3 2 34 34 H 1.09002 * 109.46957 * 300.00376 * 5 4 3 35 35 H 1.09003 * 109.46953 * 60.00069 * 5 4 3 36 36 H 1.08998 * 109.47234 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47239 * 173.38204 * 6 3 2 38 38 H 1.09000 * 109.47371 * 53.37947 * 6 3 2 39 39 H 1.08995 * 109.47095 * 33.71256 * 8 7 6 40 40 H 1.08993 * 109.47296 * 153.72047 * 8 7 6 41 41 H 0.97000 * 119.99823 * 180.02562 * 12 11 9 42 42 H 1.09002 * 109.47149 * 52.17355 * 19 17 7 43 43 H 1.09004 * 109.47031 * 292.17541 * 19 17 7 44 44 H 1.09004 * 117.49416 * 0.02562 * 22 20 19 45 45 H 1.08997 * 117.49958 * 214.97940 * 22 20 19 46 46 H 1.09004 * 109.46410 * 300.11790 * 25 23 20 47 47 H 1.09000 * 109.47272 * 60.11473 * 25 23 20 48 48 H 1.09000 * 109.46957 * 180.11798 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5518 1.4489 0.2350 5 6 4.0425 2.8928 0.3594 6 6 1.7309 2.0929 -1.3500 7 7 2.5179 1.4391 -2.3985 8 6 3.8895 1.8785 -2.6665 9 6 3.8673 3.0288 -3.6399 10 1 2.9256 3.3961 -4.0205 11 6 5.0490 3.6130 -4.0438 12 7 5.0297 4.6165 -4.8936 13 14 6.6776 2.9782 -3.3850 14 1 7.1900 1.9084 -4.2784 15 1 7.6587 4.0919 -3.3334 16 1 6.4792 2.4298 -2.0192 17 6 1.9800 0.4333 -3.1166 18 8 2.6605 -0.1702 -3.9190 19 6 0.5334 0.0587 -2.9226 20 6 0.1255 -0.9667 -3.9823 21 1 0.6604 -0.9020 -4.9299 22 6 -0.2866 -2.3582 -3.4974 23 6 -1.3445 -1.3887 -4.0283 24 1 -1.7766 -1.6015 -5.0062 25 6 -2.2944 -0.7536 -3.0108 26 1 -0.3634 0.6434 -0.8013 27 1 -0.3633 -1.0157 -0.1566 28 1 -0.3633 0.3722 0.9579 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5464 2.0023 0.7944 32 1 3.7791 0.9075 1.1533 33 1 4.0521 0.9663 -0.6047 34 1 3.8152 3.4342 -0.5589 35 1 3.5423 3.3755 1.1990 36 1 5.1195 2.8974 0.5272 37 1 1.9868 3.1516 -1.3103 38 1 0.6692 1.9837 -1.5712 39 1 4.3566 2.1994 -1.7354 40 1 4.4588 1.0527 -3.0929 41 1 5.8611 5.0273 -5.1780 42 1 -0.0886 0.9485 -3.0197 43 1 0.3995 -0.3717 -1.9301 44 1 -0.2674 -2.5429 -2.4233 45 1 -0.0228 -3.2087 -4.1259 46 1 -1.9567 -0.9902 -2.0017 47 1 -2.3026 0.3278 -3.1470 48 1 -3.3004 -1.1462 -3.1587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354823687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -20.866771 kcal Electronic energy + Delta-G solvation = -24326.473182 eV Core-core repulsion = 21189.160127 eV Total energy + Delta-G solvation = -3137.313055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97159 -37.83721 -36.86393 -33.91425 -32.52982 -32.22494 -29.73116 -28.63464 -28.13846 -26.39184 -25.03869 -22.62667 -21.76230 -21.30347 -20.09186 -19.50231 -17.90666 -17.11906 -16.49556 -15.88574 -15.70038 -14.91758 -14.49345 -14.29405 -14.00443 -13.75328 -13.39209 -13.29275 -12.95961 -12.74809 -12.60316 -12.42974 -12.35004 -12.13939 -11.61347 -11.51114 -11.40107 -11.33384 -11.25507 -11.05373 -10.88561 -10.69667 -10.51437 -10.35686 -10.27318 -10.15159 -9.92987 -9.79785 -9.62366 -9.47393 -8.87890 -8.55281 -7.59599 -6.06918 -4.04495 3.29742 3.35846 3.38463 3.42997 3.77805 4.00583 4.41250 4.76564 4.83153 4.91520 4.96707 5.01628 5.03539 5.22230 5.28517 5.34132 5.34857 5.46682 5.57855 5.63426 5.67393 5.72887 5.73880 5.79384 5.82938 5.87173 5.93206 5.98039 6.00145 6.04247 6.09496 6.14649 6.23207 6.28800 6.30999 6.36122 6.44428 6.54266 6.63681 6.71019 6.92003 7.03948 7.44213 7.66914 8.34354 8.51255 8.96275 9.07747 9.54503 11.06579 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.006212 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.536072 B = 4506.332555 C = 5516.635098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C -0.104 4.104 4 C -0.125 4.125 5 C -0.161 4.161 6 C 0.111 3.889 7 N -0.587 5.587 8 C 0.198 3.802 9 C -0.527 4.527 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.899 5.899 13 Si 0.870 3.130 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.263 1.263 17 C 0.511 3.489 18 O -0.546 6.546 19 C -0.134 4.134 20 C -0.127 4.127 21 H 0.114 0.886 22 C -0.175 4.175 23 C -0.160 4.160 24 H 0.101 0.899 25 C -0.123 4.123 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 -8.927 11.464 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C -0.123 4.123 4 C -0.163 4.163 5 C -0.218 4.218 6 C -0.013 4.013 7 N -0.318 5.318 8 C 0.078 3.922 9 C -0.565 4.565 10 H 0.091 0.909 11 C -0.129 4.129 12 N -0.537 5.537 13 Si 0.697 3.303 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.188 1.188 17 C 0.299 3.701 18 O -0.424 6.424 19 C -0.173 4.173 20 C -0.146 4.146 21 H 0.132 0.868 22 C -0.212 4.212 23 C -0.178 4.178 24 H 0.119 0.881 25 C -0.180 4.180 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.380 -9.098 10.944 18.223 hybrid contribution 0.947 -0.129 0.163 0.969 sum -10.433 -9.227 11.107 17.815 Atomic orbital electron populations 1.22086 0.96323 1.01562 1.02056 1.21722 0.95362 0.97171 1.02284 1.21646 0.96628 0.96085 0.97965 1.21720 0.95220 0.97659 1.01669 1.21950 1.00542 0.96758 1.02522 1.21583 0.95247 0.98119 0.86397 1.47796 1.16081 1.33568 1.34332 1.20025 0.78786 0.95855 0.97533 1.21372 0.94956 1.14529 1.25680 0.90869 1.24828 0.98775 0.94647 0.94641 1.69896 1.27416 1.23694 1.32738 0.86934 0.84241 0.78846 0.80250 1.20019 1.21144 1.18797 1.20298 0.89025 0.80019 0.80804 1.90638 1.62915 1.52831 1.36033 1.21897 0.94810 0.99635 1.00943 1.22145 0.96092 0.95180 1.01150 0.86766 1.23109 1.03565 0.93705 1.00854 1.22389 0.90897 1.03907 1.00585 0.88098 1.21366 0.98211 1.00548 0.97852 0.91603 0.92802 0.92628 0.91504 0.92124 0.90614 0.92966 0.90538 0.90449 0.93381 0.93199 0.89745 0.91125 0.93212 0.94772 0.92650 0.89422 0.87044 0.89163 0.89116 0.92490 0.92140 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.01 37.16 0.30 -1.26 16 2 C -0.13 -1.51 4.85 -26.73 -0.13 -1.64 16 3 C -0.10 -1.34 2.18 -90.62 -0.20 -1.54 16 4 C -0.13 -1.84 4.84 -26.73 -0.13 -1.97 16 5 C -0.16 -2.42 8.62 37.16 0.32 -2.10 16 6 C 0.11 1.72 4.86 -4.04 -0.02 1.70 16 7 N -0.59 -11.71 1.97 -175.07 -0.35 -12.06 16 8 C 0.20 4.75 2.92 -5.19 -0.02 4.73 16 9 C -0.53 -14.91 9.94 -34.44 -0.34 -15.26 16 10 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 13 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 14 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 17 C 0.51 10.33 6.26 -10.99 -0.07 10.27 16 18 O -0.55 -13.45 15.15 5.55 0.08 -13.36 16 19 C -0.13 -1.99 2.67 -27.89 -0.07 -2.06 16 20 C -0.13 -1.86 5.35 -90.62 -0.48 -2.35 16 21 H 0.11 1.98 7.44 -51.93 -0.39 1.60 16 22 C -0.18 -2.13 9.82 -26.73 -0.26 -2.39 16 23 C -0.16 -1.82 6.41 -90.62 -0.58 -2.40 16 24 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 25 C -0.12 -1.16 9.19 37.16 0.34 -0.82 16 26 H 0.07 0.63 4.72 -51.93 -0.25 0.38 16 27 H 0.05 0.47 8.02 -51.93 -0.42 0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.95 5.28 -51.93 -0.27 0.67 16 30 H 0.06 0.67 8.10 -51.93 -0.42 0.24 16 31 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.08 1.34 5.35 -51.93 -0.28 1.06 16 34 H 0.08 1.36 5.39 -51.93 -0.28 1.08 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.40 6.86 -51.93 -0.36 1.04 16 38 H 0.07 0.94 4.51 -51.93 -0.23 0.70 16 39 H 0.05 1.12 2.49 -51.93 -0.13 0.99 16 40 H 0.03 0.90 6.68 -51.93 -0.35 0.56 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.09 1.21 6.77 -51.93 -0.35 0.86 16 43 H 0.11 1.40 2.56 -51.93 -0.13 1.27 16 44 H 0.09 1.00 7.94 -51.93 -0.41 0.59 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 47 H 0.06 0.57 7.84 -51.93 -0.41 0.17 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -32.52 350.01 -8.38 -40.90 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.05 Total: 4.27 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.44 Total: -15.07 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.43 Total: -38.93 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.52 -8.38 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354823687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.031 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds