Wall clock time and date at job start Tue Mar 31 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47204 * 2 1 4 4 C 1.52999 * 109.46720 * 65.00143 * 3 2 1 5 5 C 1.53005 * 109.47270 * 185.94455 * 4 3 2 6 6 C 1.52997 * 109.47144 * 185.00066 * 3 2 1 7 7 N 1.46504 * 109.46846 * 65.63552 * 6 3 2 8 8 C 1.46500 * 119.99834 * 263.88031 * 7 6 3 9 9 C 1.50699 * 109.47123 * 270.40531 * 8 7 6 10 10 H 1.07998 * 120.00301 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99768 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00039 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00309 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46860 * 90.00220 * 13 11 9 15 15 H 1.48492 * 109.47100 * 210.00319 * 13 11 9 16 16 H 1.48499 * 109.46661 * 330.00721 * 13 11 9 17 17 C 1.34773 * 119.99708 * 83.88406 * 7 6 3 18 18 O 1.21276 * 120.00426 * 3.36752 * 17 7 6 19 19 C 1.50703 * 119.99691 * 183.36588 * 17 7 6 20 20 C 1.54887 * 110.48524 * 72.24816 * 19 17 7 21 21 C 1.55241 * 102.58986 * 156.67501 * 20 19 17 22 22 C 1.54264 * 104.22947 * 322.08642 * 21 20 19 23 23 C 1.53870 * 106.59946 * 23.61205 * 22 21 20 24 24 H 1.09001 * 109.46813 * 299.99588 * 1 2 3 25 25 H 1.08997 * 109.47736 * 59.99582 * 1 2 3 26 26 H 1.09004 * 109.46949 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46813 * 240.00411 * 2 1 3 28 28 H 1.08997 * 109.47736 * 120.00418 * 2 1 3 29 29 H 1.08993 * 109.47059 * 305.00646 * 3 2 1 30 30 H 1.08998 * 109.47645 * 305.94427 * 4 3 2 31 31 H 1.09000 * 109.47191 * 65.94815 * 4 3 2 32 32 H 1.08998 * 109.46483 * 63.68539 * 5 4 3 33 33 H 1.08997 * 109.47227 * 183.68734 * 5 4 3 34 34 H 1.09002 * 109.46946 * 303.69339 * 5 4 3 35 35 H 1.08995 * 109.47511 * 305.63094 * 6 3 2 36 36 H 1.09002 * 109.46922 * 185.63128 * 6 3 2 37 37 H 1.09002 * 109.46746 * 30.40633 * 8 7 6 38 38 H 1.08999 * 109.46467 * 150.40439 * 8 7 6 39 39 H 0.97000 * 120.00359 * 179.97438 * 12 11 9 40 40 H 1.09000 * 110.43469 * 309.71331 * 19 17 7 41 41 H 1.09003 * 110.76153 * 275.06920 * 20 19 17 42 42 H 1.09003 * 110.75869 * 38.43799 * 20 19 17 43 43 H 1.09000 * 110.47120 * 203.39910 * 21 20 19 44 44 H 1.08999 * 110.57937 * 80.83343 * 21 20 19 45 45 H 1.08994 * 110.03599 * 264.31991 * 22 21 20 46 46 H 1.09005 * 110.06737 * 142.91487 * 22 21 20 47 47 H 1.09000 * 110.03102 * 240.71522 * 23 22 21 48 48 H 1.09000 * 110.03492 * 119.28394 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.0141 3.6076 1.2467 6 6 3.5648 1.4443 -0.1257 7 7 3.9473 0.9119 -1.4359 8 6 4.3105 -0.5006 -1.5749 9 6 5.7913 -0.6633 -1.3475 10 1 6.4011 0.1992 -1.1224 11 6 6.3678 -1.9131 -1.4279 12 7 7.6603 -2.0551 -1.2300 13 14 5.3133 -3.4049 -1.8179 14 1 5.2647 -3.6058 -3.2885 15 1 5.8991 -4.6074 -1.1731 16 1 3.9378 -3.1871 -1.3024 17 6 3.9652 1.7215 -2.5132 18 8 3.7242 2.9035 -2.3876 19 6 4.2848 1.1581 -3.8739 20 6 3.1049 0.3018 -4.3968 21 6 3.3192 0.3332 -5.9340 22 6 3.8069 1.7686 -6.2197 23 6 4.4209 2.2930 -4.9099 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6053 1.9816 -0.8417 30 1 0.5585 2.0324 1.4486 31 1 2.1537 1.6527 2.1410 32 1 1.4462 4.0957 0.4547 33 1 1.7857 4.0805 2.2019 34 1 3.0802 3.7018 1.0403 35 1 3.9949 0.8221 0.6590 36 1 3.9364 2.4642 -0.0254 37 1 3.7630 -1.0905 -0.8398 38 1 4.0569 -0.8438 -2.5779 39 1 8.0659 -2.9344 -1.2861 40 1 5.1986 0.5652 -3.8353 41 1 3.1687 -0.7176 -4.0161 42 1 2.1503 0.7556 -4.1304 43 1 2.3810 0.1386 -6.4538 44 1 4.0761 -0.3930 -6.2303 45 1 2.9667 2.3964 -6.5159 46 1 4.5604 1.7578 -7.0072 47 1 3.8786 3.1754 -4.5703 48 1 5.4726 2.5360 -5.0615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355219649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:08 Heat of formation + Delta-G solvation = -74.172595 kcal Electronic energy + Delta-G solvation = -24123.901743 eV Core-core repulsion = 20984.277174 eV Total energy + Delta-G solvation = -3139.624569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.75918 -37.53026 -36.25046 -34.62472 -32.42641 -31.59702 -29.54470 -28.39189 -28.23157 -26.99253 -24.07135 -22.89372 -22.28869 -20.74824 -20.24178 -19.51728 -18.00193 -17.02094 -16.67933 -15.81052 -15.13506 -14.76594 -14.56543 -14.15882 -14.02801 -13.84493 -13.62454 -13.18210 -13.09668 -12.71038 -12.56299 -12.30190 -11.88064 -11.85995 -11.57255 -11.52318 -11.17728 -11.07064 -10.99800 -10.96817 -10.85598 -10.66361 -10.57399 -10.44282 -10.37666 -10.17651 -10.12678 -10.08559 -9.94422 -9.58660 -8.93184 -8.70179 -7.65579 -6.21156 -4.21968 3.15896 3.23797 3.25464 3.40632 3.89664 4.26003 4.86042 4.94611 4.99174 5.07877 5.09778 5.11028 5.20982 5.42418 5.49314 5.56903 5.62755 5.72092 5.79260 5.84916 5.88332 5.89544 5.92923 5.96402 6.00261 6.04974 6.10239 6.13716 6.19054 6.20873 6.24563 6.32193 6.33454 6.37197 6.48867 6.52392 6.57843 6.60245 6.65290 6.72303 6.74530 6.81143 7.42945 7.47748 8.18461 8.45211 8.84607 9.01108 9.38652 10.91722 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010243 B = 0.008099 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.047935 B = 3456.428666 C = 4852.625069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.153 4.153 6 C 0.123 3.877 7 N -0.587 5.587 8 C 0.201 3.799 9 C -0.539 4.539 10 H 0.077 0.923 11 C 0.076 3.924 12 N -0.892 5.892 13 Si 0.867 3.133 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.526 3.474 18 O -0.570 6.570 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.113 4.113 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.266 0.734 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 3.864 -2.329 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.210 4.210 6 C 0.000 4.000 7 N -0.316 5.316 8 C 0.080 3.920 9 C -0.577 4.577 10 H 0.095 0.905 11 C -0.127 4.127 12 N -0.529 5.529 13 Si 0.693 3.307 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.188 1.188 17 C 0.315 3.685 18 O -0.451 6.451 19 C -0.134 4.134 20 C -0.150 4.150 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.181 4.315 -2.237 13.115 hybrid contribution -0.202 -1.093 -0.104 1.116 sum -12.383 3.222 -2.341 13.007 Atomic orbital electron populations 1.21811 0.96543 1.00977 1.01376 1.21656 0.95124 0.96722 1.02587 1.21585 0.96638 0.95855 0.97965 1.21543 1.00807 0.95643 0.97380 1.21815 1.02273 0.96113 1.00789 1.21410 0.93108 1.00030 0.85449 1.47840 1.65042 1.11627 1.07051 1.20014 0.96844 0.77474 0.97641 1.21418 0.91376 0.95449 1.49499 0.90484 1.24871 0.94770 0.98568 0.94512 1.69896 1.10208 1.23888 1.48944 0.86984 0.81291 0.83115 0.79269 1.19773 1.20905 1.18767 1.20337 0.76000 0.85791 0.86369 1.90557 1.51823 1.16316 1.86422 1.22113 1.01174 0.98025 0.92057 1.22572 0.97333 0.99939 0.95168 1.22407 1.00772 0.97096 0.95776 1.22117 0.99950 0.96208 0.97647 1.22062 1.01214 0.98489 0.93287 0.92845 0.93156 0.93244 0.91286 0.92072 0.91111 0.92024 0.92075 0.92929 0.93385 0.92135 0.90447 0.90810 0.94732 0.94601 0.92415 0.87066 0.90598 0.91636 0.91961 0.91370 0.92215 0.92108 0.90131 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.68 37.16 0.36 -1.47 16 2 C -0.12 -1.80 4.81 -26.73 -0.13 -1.93 16 3 C -0.10 -1.54 2.00 -90.62 -0.18 -1.72 16 4 C -0.12 -1.49 5.28 -26.73 -0.14 -1.63 16 5 C -0.15 -1.95 9.77 37.16 0.36 -1.59 16 6 C 0.12 2.24 4.69 -4.04 -0.02 2.22 16 7 N -0.59 -11.88 2.19 -175.06 -0.38 -12.26 16 8 C 0.20 4.37 2.97 -5.19 -0.02 4.35 16 9 C -0.54 -14.15 9.74 -34.44 -0.34 -14.49 16 10 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 13 Si 0.87 19.64 27.47 -169.99 -4.67 14.98 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 17 C 0.53 10.78 6.92 -10.99 -0.08 10.70 16 18 O -0.57 -12.63 15.07 5.56 0.08 -12.55 16 19 C -0.11 -2.04 2.27 -90.11 -0.20 -2.25 16 20 C -0.11 -1.75 5.83 -24.55 -0.14 -1.89 16 21 C -0.12 -1.63 6.84 -24.88 -0.17 -1.80 16 22 C -0.12 -1.60 6.80 -25.62 -0.17 -1.78 16 23 C -0.11 -1.81 6.24 -25.62 -0.16 -1.97 16 24 H 0.05 0.59 6.44 -51.93 -0.33 0.25 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.12 5.94 -51.93 -0.31 0.82 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 0.72 6.31 -51.93 -0.33 0.39 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 35 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 36 H 0.07 1.40 5.71 -51.93 -0.30 1.10 16 37 H 0.03 0.75 5.62 -51.93 -0.29 0.45 16 38 H 0.04 0.75 3.85 -51.93 -0.20 0.55 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.11 2.23 7.50 -51.93 -0.39 1.84 16 41 H 0.08 1.21 6.22 -51.93 -0.32 0.89 16 42 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 1.39 6.77 -51.93 -0.35 1.04 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -28.82 359.57 -8.55 -37.37 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.65 Total: 5.46 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.12 Total: -13.28 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.39 Total: -37.40 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.82 -8.55 -37.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355219649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.805 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds