Wall clock time and date at job start Tue Mar 31 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46931 * 2 1 4 4 C 1.53002 * 109.46948 * 240.00784 * 2 1 3 5 5 C 1.53000 * 109.47343 * 120.00433 * 2 1 3 6 6 H 1.08999 * 109.46737 * 180.02562 * 5 2 1 7 7 C 1.52999 * 109.47043 * 300.00180 * 5 2 1 8 8 C 1.53000 * 109.47155 * 182.91508 * 7 5 2 9 9 C 1.52993 * 109.47253 * 185.89690 * 8 7 5 10 10 C 1.53002 * 109.47104 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46958 * 60.00228 * 10 9 8 12 12 C 1.52997 * 109.46789 * 299.99539 * 11 10 9 13 13 C 1.53000 * 109.47308 * 65.89377 * 8 7 5 14 14 N 1.46498 * 109.46891 * 60.00031 * 5 2 1 15 15 C 1.34783 * 119.99931 * 85.00140 * 14 5 2 16 16 O 1.21683 * 120.00039 * 359.97438 * 15 14 5 17 17 C 1.46369 * 119.99791 * 179.97438 * 15 14 5 18 18 H 1.08008 * 120.00351 * 353.86088 * 17 15 14 19 19 C 1.40050 * 119.99777 * 173.57772 * 17 15 14 20 20 N 1.30669 * 120.00398 * 6.13037 * 19 17 15 21 21 Si 1.86808 * 120.00078 * 186.12644 * 19 17 15 22 22 H 1.48500 * 109.47017 * 94.98317 * 21 19 17 23 23 H 1.48504 * 109.47175 * 214.98935 * 21 19 17 24 24 H 1.48498 * 109.46835 * 334.98690 * 21 19 17 25 25 H 1.09000 * 109.47252 * 299.99178 * 1 2 3 26 26 H 1.08999 * 109.47398 * 59.99812 * 1 2 3 27 27 H 1.09005 * 109.46814 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46764 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47233 * 300.00289 * 3 2 1 30 30 H 1.09000 * 109.46482 * 60.00350 * 3 2 1 31 31 H 1.09005 * 109.46885 * 299.99371 * 4 2 1 32 32 H 1.08999 * 109.47558 * 59.99502 * 4 2 1 33 33 H 1.09001 * 109.47089 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46771 * 302.91266 * 7 5 2 35 35 H 1.08994 * 109.47375 * 62.91184 * 7 5 2 36 36 H 1.09007 * 109.46456 * 305.89965 * 8 7 5 37 37 H 1.08998 * 109.46930 * 299.99968 * 9 8 7 38 38 H 1.08998 * 109.47024 * 59.99487 * 9 8 7 39 39 H 1.08996 * 109.46980 * 299.99917 * 10 9 8 40 40 H 1.09006 * 109.46583 * 179.97438 * 10 9 8 41 41 H 1.09002 * 109.46955 * 179.97438 * 11 10 9 42 42 H 1.08998 * 109.46805 * 59.99924 * 11 10 9 43 43 H 1.08996 * 109.47482 * 300.00515 * 12 11 10 44 44 H 1.08998 * 109.46780 * 179.97438 * 12 11 10 45 45 H 1.09006 * 109.47310 * 300.00539 * 13 8 7 46 46 H 1.08998 * 109.46896 * 60.00019 * 13 8 7 47 47 H 0.96995 * 120.00092 * 264.99401 * 14 5 2 48 48 H 0.96994 * 120.00549 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7209 1.2493 7 6 1.5300 -0.0002 2.4985 8 6 2.0991 -0.6779 3.7466 9 6 1.4755 -0.0523 4.9958 10 6 2.0441 -0.7305 6.2439 11 6 3.5618 -0.5397 6.2813 12 6 4.1853 -1.1654 5.0321 13 6 3.6166 -0.4867 3.7837 14 7 1.5517 -2.1025 1.2490 15 6 2.2286 -3.0565 0.5794 16 8 3.2450 -2.7705 -0.0254 17 6 1.7409 -4.4366 0.5798 18 1 0.8970 -4.7111 1.1954 19 6 2.3650 -5.3999 -0.2228 20 7 3.4537 -5.0978 -0.8791 21 14 1.6409 -7.1169 -0.3549 22 1 0.7689 -7.1954 -1.5544 23 1 2.7390 -8.1093 -0.4752 24 1 0.8391 -7.4107 0.8600 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7215 -1.2492 34 1 1.8501 1.0415 2.4727 35 1 0.4413 -0.0452 2.5250 36 1 1.8676 -1.7428 3.7192 37 1 1.7070 1.0124 5.0230 38 1 0.3944 -0.1885 4.9693 39 1 1.8123 -1.7952 6.2163 40 1 1.6001 -0.2844 7.1338 41 1 3.9668 -1.0225 7.1707 42 1 3.7935 0.5250 6.3088 43 1 3.9534 -2.2301 5.0045 44 1 5.2664 -1.0291 5.0585 45 1 4.0609 -0.9324 2.8937 46 1 3.8481 0.5780 3.8110 47 1 0.7414 -2.3305 1.7309 48 1 3.8861 -5.7651 -1.4346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357049243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:05 Heat of formation + Delta-G solvation = -88.236014 kcal Electronic energy + Delta-G solvation = -24172.110087 eV Core-core repulsion = 21031.875683 eV Total energy + Delta-G solvation = -3140.234405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.38620 -37.77549 -35.82707 -32.95222 -32.41654 -31.19965 -30.54905 -27.65041 -26.82134 -26.62800 -25.53198 -23.26898 -22.29006 -20.59104 -19.94541 -19.30450 -17.84878 -16.99762 -15.44906 -15.33164 -14.68002 -14.56047 -14.35174 -13.94932 -13.92971 -13.74466 -13.38651 -13.02490 -12.42763 -12.24785 -12.11757 -12.03895 -11.91195 -11.75000 -11.50228 -11.25897 -11.07061 -11.03504 -10.95039 -10.91279 -10.70986 -10.58649 -10.37687 -10.33182 -10.19086 -10.12210 -9.97950 -9.84115 -9.66012 -9.42517 -8.78165 -7.47715 -7.26877 -6.12740 -4.56057 3.15839 3.23676 3.26430 4.15105 4.65797 4.81848 4.87297 4.94138 4.99167 5.24774 5.35834 5.41216 5.47746 5.60487 5.64237 5.69385 5.71025 5.72595 5.81243 5.87801 5.91577 5.97708 6.03757 6.10139 6.15896 6.17988 6.22027 6.25967 6.28845 6.32475 6.40937 6.47010 6.49213 6.50358 6.59289 6.68024 6.76234 6.82503 6.86397 6.92711 7.10519 7.46010 7.49530 8.03960 8.24960 8.43176 9.09730 9.66322 10.67151 10.89406 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.006153 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.965201 B = 4549.434548 C = 5815.894492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.124 4.124 5 C 0.167 3.833 6 H 0.076 0.924 7 C -0.123 4.123 8 C -0.084 4.084 9 C -0.112 4.112 10 C -0.119 4.119 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.113 4.113 14 N -0.756 5.756 15 C 0.560 3.440 16 O -0.574 6.574 17 C -0.548 4.548 18 H 0.063 0.937 19 C 0.091 3.909 20 N -0.768 5.768 21 Si 0.900 3.100 22 H -0.274 1.274 23 H -0.280 1.280 24 H -0.266 1.266 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.376 0.624 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 10.295 9.431 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C -0.196 4.196 4 C -0.182 4.182 5 C 0.061 3.939 6 H 0.094 0.906 7 C -0.161 4.161 8 C -0.103 4.103 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.154 4.154 12 C -0.157 4.157 13 C -0.151 4.151 14 N -0.410 5.410 15 C 0.364 3.636 16 O -0.456 6.456 17 C -0.586 4.586 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.397 5.397 21 Si 0.725 3.275 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.190 1.190 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.207 0.793 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.094 10.436 8.858 14.034 hybrid contribution -0.809 -0.985 0.089 1.278 sum -3.903 9.451 8.948 13.588 Atomic orbital electron populations 1.21838 0.95622 1.01804 1.00035 1.20968 0.95086 0.94427 0.97596 1.21908 1.00865 0.96248 1.00626 1.21831 1.01507 1.00929 0.93892 1.20545 0.99052 0.83286 0.91046 0.90601 1.22013 1.00331 0.99333 0.94378 1.21128 0.94890 1.00928 0.93351 1.21583 0.99395 0.99430 0.94555 1.21525 0.95607 1.00963 0.97548 1.21522 0.95609 1.00493 0.97817 1.21528 0.99246 1.00354 0.94573 1.21596 0.95510 0.99846 0.98101 1.46137 1.30043 1.06708 1.58094 1.18031 0.83061 0.84710 0.77848 1.90600 1.26128 1.82526 1.46387 1.20901 1.16931 0.92808 1.27932 0.91828 1.25635 0.93685 0.99440 0.94097 1.70015 1.14229 1.33837 1.21585 0.86480 0.79233 0.82602 0.79139 1.19949 1.20588 1.19031 0.93452 0.93976 0.92200 0.92981 0.93493 0.93069 0.90986 0.95667 0.92341 0.91602 0.91983 0.90392 0.92551 0.92434 0.91996 0.92708 0.92671 0.92477 0.91857 0.92536 0.91107 0.92808 0.79281 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.96 37.16 0.30 -1.80 16 2 C -0.08 -1.36 0.62 -154.51 -0.10 -1.45 16 3 C -0.14 -2.01 8.13 37.16 0.30 -1.71 16 4 C -0.12 -2.59 7.00 37.16 0.26 -2.33 16 5 C 0.17 3.01 1.39 -67.93 -0.09 2.92 16 6 H 0.08 1.60 5.90 -51.93 -0.31 1.30 16 7 C -0.12 -1.73 3.52 -26.73 -0.09 -1.83 16 8 C -0.08 -1.18 2.12 -90.62 -0.19 -1.37 16 9 C -0.11 -1.30 5.20 -26.73 -0.14 -1.44 16 10 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 11 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 12 C -0.12 -1.59 5.92 -26.71 -0.16 -1.75 16 13 C -0.11 -1.64 4.98 -26.71 -0.13 -1.77 16 14 N -0.76 -15.79 3.47 -55.22 -0.19 -15.98 16 15 C 0.56 14.95 6.09 -12.99 -0.08 14.88 16 16 O -0.57 -17.25 12.16 5.20 0.06 -17.19 16 17 C -0.55 -15.11 9.54 -35.63 -0.34 -15.45 16 18 H 0.06 1.64 7.85 -52.48 -0.41 1.23 16 19 C 0.09 2.50 5.49 -17.37 -0.10 2.41 16 20 N -0.77 -22.64 11.86 55.55 0.66 -21.98 16 21 Si 0.90 20.17 29.56 -169.99 -5.03 15.14 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H 0.05 0.64 6.50 -51.93 -0.34 0.30 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.01 7.61 -51.93 -0.39 0.62 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.65 6.37 -51.93 -0.33 0.32 16 31 H 0.07 1.78 5.77 -51.93 -0.30 1.48 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 1.34 7.52 -51.93 -0.39 0.95 16 34 H 0.07 0.86 6.28 -51.93 -0.33 0.53 16 35 H 0.06 0.83 6.59 -51.93 -0.34 0.49 16 36 H 0.08 1.27 7.48 -51.93 -0.39 0.88 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.24 6.53 -51.93 -0.34 0.90 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.38 7.21 8.53 -40.82 -0.35 6.86 16 48 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -30.52 355.25 -8.87 -39.39 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.85 Total: 8.93 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.88 Total: -13.66 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.47 Total: -37.96 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.06 Total: -17.19 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.52 -8.87 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357049243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.845 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds