Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47031 * 2 1 4 4 C 1.53004 * 109.46929 * 240.00546 * 2 1 3 5 5 C 1.52997 * 109.47435 * 120.00282 * 2 1 3 6 6 H 1.09004 * 109.46812 * 300.00058 * 5 2 1 7 7 C 1.52999 * 109.47114 * 179.97438 * 5 2 1 8 8 C 1.52997 * 109.47080 * 174.99701 * 7 5 2 9 9 C 1.53001 * 109.47244 * 295.00272 * 8 7 5 10 10 C 1.53008 * 109.46951 * 180.02562 * 9 8 7 11 11 C 1.52991 * 109.47323 * 59.99924 * 10 9 8 12 12 C 1.53001 * 109.47170 * 299.99943 * 11 10 9 13 13 C 1.52999 * 109.47196 * 60.00351 * 12 11 10 14 14 N 1.46498 * 109.47036 * 60.00123 * 5 2 1 15 15 C 1.34777 * 119.99828 * 274.72131 * 14 5 2 16 16 O 1.21693 * 120.00014 * 0.28042 * 15 14 5 17 17 C 1.46373 * 120.00147 * 180.27610 * 15 14 5 18 18 H 1.08002 * 120.00141 * 0.02562 * 17 15 14 19 19 C 1.40050 * 120.00087 * 179.97438 * 17 15 14 20 20 N 1.30674 * 120.00151 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99913 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46768 * 120.00068 * 21 19 17 24 24 H 1.48498 * 109.47283 * 240.00320 * 21 19 17 25 25 H 1.09001 * 109.46678 * 299.99308 * 1 2 3 26 26 H 1.08997 * 109.47244 * 60.00177 * 1 2 3 27 27 H 1.09003 * 109.47092 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47066 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47191 * 300.00481 * 3 2 1 30 30 H 1.08995 * 109.46928 * 60.00324 * 3 2 1 31 31 H 1.09003 * 109.46809 * 299.99653 * 4 2 1 32 32 H 1.09000 * 109.47238 * 59.99553 * 4 2 1 33 33 H 1.08997 * 109.47037 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47492 * 295.00122 * 7 5 2 35 35 H 1.09007 * 109.47243 * 54.99904 * 7 5 2 36 36 H 1.09002 * 109.47319 * 55.00263 * 8 7 5 37 37 H 1.09001 * 109.47251 * 299.99755 * 9 8 7 38 38 H 1.08994 * 109.46988 * 60.00140 * 9 8 7 39 39 H 1.09001 * 109.46833 * 299.99876 * 10 9 8 40 40 H 1.09000 * 109.46614 * 179.97438 * 10 9 8 41 41 H 1.08998 * 109.47185 * 179.97438 * 11 10 9 42 42 H 1.09001 * 109.47205 * 60.00180 * 11 10 9 43 43 H 1.09001 * 109.47251 * 300.00210 * 12 11 10 44 44 H 1.09001 * 109.47349 * 180.02562 * 12 11 10 45 45 H 1.08997 * 109.47555 * 180.02562 * 13 12 11 46 46 H 1.09002 * 109.47658 * 59.99831 * 13 12 11 47 47 H 0.97001 * 120.00384 * 95.00578 * 14 5 2 48 48 H 0.96991 * 119.99824 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5701 -0.7218 1.2488 8 6 4.0802 -1.3314 2.5560 9 6 3.6760 -0.4353 3.7285 10 6 4.1867 -1.0447 5.0358 11 6 5.7114 -1.1594 4.9836 12 6 6.1156 -2.0554 3.8111 13 6 5.6051 -1.4461 2.5039 14 7 1.5518 -2.1025 1.2491 15 6 0.3321 -2.3861 1.7475 16 8 -0.3656 -1.4941 2.1930 17 6 -0.1533 -3.7669 1.7530 18 1 0.4660 -4.5587 1.3580 19 6 -1.4205 -4.0617 2.2715 20 7 -2.1697 -3.1039 2.7499 21 14 -2.0403 -5.8239 2.2778 22 1 -1.0098 -6.7132 1.6843 23 1 -2.3139 -6.2473 3.6746 24 1 -3.2897 -5.9121 1.4800 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.9331 -1.3114 0.4069 35 1 3.9338 0.3019 1.1590 36 1 3.6453 -2.3220 2.6891 37 1 4.1109 0.5553 3.5956 38 1 2.5898 -0.3533 3.7654 39 1 3.7522 -2.0354 5.1689 40 1 3.8991 -0.4061 5.8710 41 1 6.0753 -1.5931 5.9150 42 1 6.1460 -0.1687 4.8504 43 1 5.6811 -3.0462 3.9443 44 1 7.2019 -2.1376 3.7742 45 1 5.8926 -2.0846 1.6686 46 1 6.0396 -0.4554 2.3706 47 1 2.1080 -2.8136 0.8941 48 1 -3.0474 -3.3080 3.1086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357049245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = -88.269441 kcal Electronic energy + Delta-G solvation = -24168.027632 eV Core-core repulsion = 21027.791777 eV Total energy + Delta-G solvation = -3140.235854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.38509 -37.77568 -35.82696 -32.94628 -32.41434 -31.20674 -30.55378 -27.64429 -26.82199 -26.62974 -25.53120 -23.27920 -22.28711 -20.59176 -19.93721 -19.31328 -17.85325 -16.99228 -15.45591 -15.33476 -14.68437 -14.55565 -14.34278 -13.94837 -13.92929 -13.74097 -13.39946 -13.02092 -12.43234 -12.25521 -12.09932 -12.03970 -11.90818 -11.75058 -11.50953 -11.25883 -11.05844 -11.04266 -10.94980 -10.91377 -10.71186 -10.58591 -10.38786 -10.33301 -10.17902 -10.11777 -9.98111 -9.84041 -9.66409 -9.42281 -8.79188 -7.47439 -7.26894 -6.11922 -4.56448 3.14851 3.23687 3.27387 4.15075 4.65896 4.81628 4.87265 4.94180 4.99379 5.24789 5.35768 5.41177 5.47572 5.60229 5.64150 5.69097 5.70892 5.72610 5.81178 5.87880 5.92416 5.97893 6.03663 6.10253 6.16042 6.17888 6.21579 6.25867 6.28735 6.32313 6.40888 6.46945 6.49015 6.50511 6.59053 6.67747 6.76022 6.82351 6.86782 6.92666 7.10316 7.45357 7.49285 8.04000 8.25167 8.43178 9.09734 9.66532 10.67403 10.89800 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.006222 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.819259 B = 4498.877945 C = 5808.518172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.135 4.135 5 C 0.167 3.833 6 H 0.077 0.923 7 C -0.123 4.123 8 C -0.084 4.084 9 C -0.114 4.114 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.112 4.112 14 N -0.756 5.756 15 C 0.559 3.441 16 O -0.574 6.574 17 C -0.547 4.547 18 H 0.064 0.936 19 C 0.090 3.910 20 N -0.768 5.768 21 Si 0.900 3.100 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.277 1.277 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.376 0.624 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.857 4.099 -1.555 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.081 4.081 3 C -0.197 4.197 4 C -0.193 4.193 5 C 0.060 3.940 6 H 0.095 0.905 7 C -0.160 4.160 8 C -0.103 4.103 9 C -0.151 4.151 10 C -0.157 4.157 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.150 4.150 14 N -0.410 5.410 15 C 0.363 3.637 16 O -0.456 6.456 17 C -0.585 4.585 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.397 5.397 21 Si 0.726 3.274 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.207 0.793 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.153 4.817 -1.125 14.052 hybrid contribution -0.088 -1.246 -0.216 1.268 sum 13.065 3.571 -1.341 13.611 Atomic orbital electron populations 1.21827 0.93363 1.03440 0.99526 1.20970 0.96946 0.94135 0.96034 1.21910 1.00145 0.96487 1.01115 1.21835 0.99709 1.01020 0.96716 1.20561 0.90998 0.85794 0.96618 0.90527 1.22013 0.96196 1.00803 0.97032 1.21126 0.94177 1.00384 0.94596 1.21596 1.01539 0.98054 0.93902 1.21521 0.95047 1.01389 0.97748 1.21520 0.96479 0.99597 0.97844 1.21522 0.99669 0.99337 0.95114 1.21584 0.96083 1.00380 0.96909 1.46137 1.20134 1.05957 1.68774 1.18043 0.78786 0.89853 0.77033 1.90604 1.56081 1.48572 1.50362 1.20936 1.01807 0.92456 1.43252 0.91819 1.25644 0.96352 0.97741 0.93176 1.70023 1.08375 1.32245 1.29056 0.86434 0.79123 0.83620 0.78262 1.18916 1.20314 1.20297 0.92342 0.95650 0.91009 0.93058 0.93490 0.92974 0.92212 0.93977 0.93470 0.92013 0.91565 0.90434 0.92797 0.91071 0.91875 0.92529 0.92672 0.92472 0.92008 0.92704 0.92429 0.92542 0.79295 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 7.00 37.16 0.26 -2.32 16 2 C -0.08 -1.36 0.62 -154.50 -0.10 -1.45 16 3 C -0.14 -2.01 8.13 37.16 0.30 -1.71 16 4 C -0.14 -2.09 7.96 37.16 0.30 -1.79 16 5 C 0.17 3.00 1.39 -67.93 -0.09 2.91 16 6 H 0.08 1.62 5.77 -51.93 -0.30 1.32 16 7 C -0.12 -1.74 3.50 -26.73 -0.09 -1.83 16 8 C -0.08 -1.18 2.13 -90.62 -0.19 -1.37 16 9 C -0.11 -1.65 4.97 -26.73 -0.13 -1.78 16 10 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 11 C -0.12 -1.31 5.92 -26.74 -0.16 -1.47 16 12 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 13 C -0.11 -1.31 5.20 -26.73 -0.14 -1.44 16 14 N -0.76 -15.81 3.56 -55.22 -0.20 -16.01 16 15 C 0.56 14.95 6.11 -12.99 -0.08 14.87 16 16 O -0.57 -17.25 12.15 5.20 0.06 -17.19 16 17 C -0.55 -15.09 9.54 -35.63 -0.34 -15.43 16 18 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 19 C 0.09 2.48 5.50 -17.36 -0.10 2.39 16 20 N -0.77 -22.67 11.83 55.55 0.66 -22.02 16 21 Si 0.90 20.18 29.56 -169.99 -5.02 15.15 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H 0.06 1.34 7.53 -51.93 -0.39 0.95 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.76 5.79 -51.93 -0.30 1.46 16 28 H 0.05 0.65 6.32 -51.93 -0.33 0.32 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 34 H 0.06 0.83 6.71 -51.93 -0.35 0.48 16 35 H 0.07 0.87 6.18 -51.93 -0.32 0.54 16 36 H 0.08 1.26 7.62 -51.93 -0.40 0.87 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.25 6.46 -51.93 -0.34 0.91 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.38 7.21 8.58 -40.82 -0.35 6.86 16 48 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -30.58 355.35 -8.87 -39.45 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.85 Total: 8.92 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.88 Total: -13.66 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.46 Total: -38.03 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.06 Total: -17.19 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.58 -8.87 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357049245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.819 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds