Wall clock time and date at job start Tue Mar 31 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47085 * 2 1 4 4 C 1.52999 * 109.47619 * 184.37819 * 3 2 1 5 5 C 1.50703 * 112.90557 * 306.09418 * 4 3 2 6 6 O 1.21278 * 120.00124 * 103.01361 * 5 4 3 7 7 N 1.34777 * 119.99783 * 283.01461 * 5 4 3 8 8 C 1.46496 * 119.99915 * 185.31976 * 7 5 4 9 9 C 1.52998 * 109.47519 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47070 * 300.00675 * 9 8 7 11 11 C 1.52999 * 109.46898 * 60.00003 * 9 8 7 12 12 C 1.52996 * 109.47747 * 179.97438 * 9 8 7 13 13 C 1.50699 * 109.47411 * 180.02562 * 12 9 8 14 14 H 1.07997 * 119.99761 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99984 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99974 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99743 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47091 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46838 * 120.00150 * 17 15 13 20 20 H 1.48503 * 109.46820 * 239.99604 * 17 15 13 21 21 C 1.53775 * 113.61773 * 174.83862 * 4 3 2 22 22 C 1.53782 * 87.08422 * 220.02131 * 21 4 3 23 23 C 1.53781 * 113.61113 * 77.34051 * 4 3 2 24 24 H 1.08994 * 109.47250 * 60.00538 * 1 2 3 25 25 H 1.09004 * 109.46657 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47512 * 299.99744 * 1 2 3 27 27 H 1.09003 * 109.47503 * 240.00149 * 2 1 3 28 28 H 1.09004 * 109.47264 * 119.99565 * 2 1 3 29 29 H 1.09006 * 109.47517 * 64.37682 * 3 2 1 30 30 H 1.09001 * 109.46828 * 304.38038 * 3 2 1 31 31 H 0.96997 * 120.00156 * 5.32067 * 7 5 4 32 32 H 1.09000 * 109.47447 * 300.00551 * 8 7 5 33 33 H 1.09000 * 109.47234 * 60.00017 * 8 7 5 34 34 H 1.09000 * 109.47262 * 59.99410 * 10 9 8 35 35 H 1.08998 * 109.46937 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.46706 * 299.99199 * 10 9 8 37 37 H 1.08999 * 109.47351 * 59.99990 * 11 9 8 38 38 H 1.08995 * 109.47411 * 180.02562 * 11 9 8 39 39 H 1.09010 * 109.47153 * 300.00406 * 11 9 8 40 40 H 1.08995 * 109.46961 * 300.00900 * 12 9 8 41 41 H 1.09005 * 109.46930 * 59.99744 * 12 9 8 42 42 H 0.96998 * 119.99476 * 179.97438 * 16 15 13 43 43 H 1.08996 * 113.61540 * 105.47103 * 21 4 3 44 44 H 1.09002 * 113.68997 * 334.58061 * 21 4 3 45 45 H 1.08998 * 113.61670 * 139.97886 * 22 21 4 46 46 H 1.09000 * 113.61280 * 270.88511 * 22 21 4 47 47 H 1.09001 * 113.61820 * 25.43570 * 23 4 3 48 48 H 1.09005 * 113.61553 * 254.53001 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5660 1.4440 -0.1101 5 6 4.2311 0.5985 0.9453 6 8 4.6666 -0.4966 0.6594 7 7 4.3418 1.0595 2.2070 8 6 5.0897 0.2905 3.2047 9 6 5.0624 1.0299 4.5439 10 6 5.7030 2.4094 4.3780 11 6 3.6133 1.1929 5.0069 12 6 5.8429 0.2265 5.5861 13 6 5.8154 0.9545 6.9053 14 1 5.2931 1.8958 6.9918 15 6 6.4571 0.4188 8.0018 16 7 7.0927 -0.7278 7.8966 17 14 6.4224 1.3209 9.6372 18 1 5.6463 2.5786 9.4924 19 1 5.7830 0.4595 10.6641 20 1 7.8108 1.6417 10.0551 21 6 4.1725 2.8507 -0.2451 22 6 5.1483 2.2462 -1.2685 23 6 4.0811 1.1709 -1.5331 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7421 1.9333 0.9266 30 1 1.6139 1.9784 -0.8482 31 1 3.9264 1.9003 2.4543 32 1 4.6336 -0.6924 3.3225 33 1 6.1222 0.1748 2.8751 34 1 5.1465 2.9815 3.6356 35 1 5.6831 2.9363 5.3320 36 1 6.7353 2.2933 4.0482 37 1 3.1568 0.2102 5.1251 38 1 3.5937 1.7200 5.9608 39 1 3.0568 1.7651 4.2645 40 1 5.3861 -0.7561 5.7041 41 1 6.8753 0.1099 5.2565 42 1 7.5444 -1.1044 8.6679 43 1 4.6578 3.2060 0.6638 44 1 3.4886 3.5832 -0.6738 45 1 5.3385 2.8927 -2.1252 46 1 6.0619 1.8540 -0.8218 47 1 3.3713 1.4431 -2.3142 48 1 4.4928 0.1701 -1.6639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359759993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:49 Heat of formation + Delta-G solvation = -58.337144 kcal Electronic energy + Delta-G solvation = -23321.058892 eV Core-core repulsion = 20182.120999 eV Total energy + Delta-G solvation = -3138.937893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77904 -38.04394 -36.70080 -34.45879 -33.56061 -32.06012 -28.86118 -27.15046 -26.52136 -26.43279 -25.66643 -24.06312 -22.90436 -21.66663 -20.90983 -19.24928 -17.89461 -16.51531 -16.28042 -15.81964 -15.71384 -15.07114 -14.52551 -14.51558 -14.41447 -13.72514 -13.39660 -13.16852 -13.10918 -12.76664 -12.54028 -12.44584 -12.44009 -12.07985 -12.06454 -11.63459 -11.27286 -11.15968 -11.03611 -11.01843 -10.85091 -10.83749 -10.65177 -10.41672 -10.29741 -10.23072 -10.19288 -9.88138 -9.61837 -9.13846 -8.91349 -8.67813 -8.36695 -6.00543 -4.01803 2.84826 3.29591 3.37541 3.39513 3.44150 4.23884 4.42626 4.44804 4.60341 4.67481 4.92377 4.96172 5.04541 5.19590 5.35094 5.45552 5.50022 5.52296 5.56233 5.58864 5.62790 5.68693 5.71251 5.74523 5.77183 5.92345 5.97066 6.04055 6.16327 6.17147 6.21000 6.23416 6.23499 6.32555 6.39260 6.58595 6.62445 6.78823 7.05925 7.06744 7.12760 7.63781 7.75894 7.80278 7.98382 8.39771 8.48899 9.03274 9.61455 11.10975 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024885 B = 0.003720 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.886502 B = 7524.647770 C = 7876.859590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.095 4.095 4 C -0.107 4.107 5 C 0.535 3.465 6 O -0.543 6.543 7 N -0.719 5.719 8 C 0.128 3.872 9 C -0.072 4.072 10 C -0.127 4.127 11 C -0.127 4.127 12 C 0.036 3.964 13 C -0.510 4.510 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.028 0.972 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.259 0.741 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.045 7.466 -17.387 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.133 4.133 4 C -0.111 4.111 5 C 0.321 3.679 6 O -0.420 6.420 7 N -0.370 5.370 8 C 0.005 3.995 9 C -0.072 4.072 10 C -0.184 4.184 11 C -0.184 4.184 12 C -0.002 4.002 13 C -0.549 4.549 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.167 4.167 22 C -0.180 4.180 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.603 6.549 -17.470 20.984 hybrid contribution -0.104 0.768 1.198 1.427 sum -9.706 7.318 -16.272 20.311 Atomic orbital electron populations 1.21760 0.95844 1.01638 1.01525 1.21519 0.95592 0.96454 1.02821 1.21504 0.91696 0.97625 1.02483 1.22035 0.96163 0.96803 0.96057 1.19821 0.78860 0.86367 0.82878 1.90676 1.49130 1.20932 1.81247 1.46155 1.55002 1.25966 1.09888 1.21617 0.95469 0.94865 0.87515 1.20895 0.96694 0.96157 0.93494 1.21757 0.99419 0.96234 1.00972 1.21757 0.95020 1.00950 1.00661 1.19092 0.94598 0.94669 0.91809 1.21220 1.32731 1.06555 0.94359 0.92208 1.25016 0.95593 0.94986 0.98908 1.69979 1.34819 1.18254 1.30329 0.86598 0.77682 0.79819 0.84260 1.19797 1.21125 1.21133 1.23017 0.98613 0.94787 1.00271 1.22845 0.97687 0.98250 0.99262 1.22855 0.97959 1.00609 0.94063 0.92931 0.92781 0.92771 0.91647 0.91832 0.91519 0.90982 0.76713 0.91866 0.91988 0.95286 0.91439 0.93394 0.93383 0.91442 0.95294 0.96362 0.96377 0.93098 0.90929 0.89272 0.91201 0.90100 0.89625 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.13 -1.35 5.52 -26.73 -0.15 -1.49 16 3 C -0.10 -0.90 4.68 -26.73 -0.13 -1.02 16 4 C -0.11 -1.18 0.82 -154.85 -0.13 -1.30 16 5 C 0.54 7.97 5.22 -10.98 -0.06 7.92 16 6 O -0.54 -10.21 16.14 5.56 0.09 -10.12 16 7 N -0.72 -10.51 4.71 -60.30 -0.28 -10.79 16 8 C 0.13 2.28 4.57 -4.05 -0.02 2.27 16 9 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 10 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 11 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 12 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 13 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 14 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.13 -1.19 7.14 -25.92 -0.19 -1.38 16 22 C -0.14 -1.41 7.80 -25.92 -0.20 -1.61 16 23 C -0.12 -1.21 6.91 -25.92 -0.18 -1.39 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.72 7.95 -51.93 -0.41 0.31 16 28 H 0.06 0.83 7.43 -51.93 -0.39 0.45 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 31 H 0.40 5.03 5.90 -40.82 -0.24 4.79 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 39 H 0.03 0.41 6.86 -51.92 -0.36 0.06 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 44 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.09 0.71 8.04 -51.93 -0.42 0.29 16 48 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -30.18 370.60 -8.51 -38.69 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.99 Total: 2.00 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.63 Total: -15.80 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.45 Total: -36.48 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.18 -8.51 -38.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.648 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds