Wall clock time and date at job start Tue Mar 31 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47085 * 2 1 4 4 C 1.52999 * 109.47619 * 184.37819 * 3 2 1 5 5 C 1.50703 * 112.90557 * 306.09418 * 4 3 2 6 6 O 1.21278 * 120.00124 * 103.01361 * 5 4 3 7 7 N 1.34777 * 119.99783 * 283.01461 * 5 4 3 8 8 C 1.46496 * 119.99915 * 185.31976 * 7 5 4 9 9 C 1.52998 * 109.47519 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47070 * 300.00675 * 9 8 7 11 11 C 1.52999 * 109.46898 * 60.00003 * 9 8 7 12 12 C 1.52996 * 109.47747 * 179.97438 * 9 8 7 13 13 C 1.50699 * 109.47411 * 180.02562 * 12 9 8 14 14 H 1.07997 * 119.99761 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99984 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99974 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99743 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47091 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46838 * 120.00150 * 17 15 13 20 20 H 1.48503 * 109.46820 * 239.99604 * 17 15 13 21 21 C 1.53775 * 113.61773 * 174.83862 * 4 3 2 22 22 C 1.53782 * 87.08422 * 220.02131 * 21 4 3 23 23 C 1.53781 * 113.61113 * 77.34051 * 4 3 2 24 24 H 1.08994 * 109.47250 * 60.00538 * 1 2 3 25 25 H 1.09004 * 109.46657 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47512 * 299.99744 * 1 2 3 27 27 H 1.09003 * 109.47503 * 240.00149 * 2 1 3 28 28 H 1.09004 * 109.47264 * 119.99565 * 2 1 3 29 29 H 1.09006 * 109.47517 * 64.37682 * 3 2 1 30 30 H 1.09001 * 109.46828 * 304.38038 * 3 2 1 31 31 H 0.96997 * 120.00156 * 5.32067 * 7 5 4 32 32 H 1.09000 * 109.47447 * 300.00551 * 8 7 5 33 33 H 1.09000 * 109.47234 * 60.00017 * 8 7 5 34 34 H 1.09000 * 109.47262 * 59.99410 * 10 9 8 35 35 H 1.08998 * 109.46937 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.46706 * 299.99199 * 10 9 8 37 37 H 1.08999 * 109.47351 * 59.99990 * 11 9 8 38 38 H 1.08995 * 109.47411 * 180.02562 * 11 9 8 39 39 H 1.09010 * 109.47153 * 300.00406 * 11 9 8 40 40 H 1.08995 * 109.46961 * 300.00900 * 12 9 8 41 41 H 1.09005 * 109.46930 * 59.99744 * 12 9 8 42 42 H 0.96998 * 119.99476 * 179.97438 * 16 15 13 43 43 H 1.08996 * 113.61540 * 105.47103 * 21 4 3 44 44 H 1.09002 * 113.68997 * 334.58061 * 21 4 3 45 45 H 1.08998 * 113.61670 * 139.97886 * 22 21 4 46 46 H 1.09000 * 113.61280 * 270.88511 * 22 21 4 47 47 H 1.09001 * 113.61820 * 25.43570 * 23 4 3 48 48 H 1.09005 * 113.61553 * 254.53001 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5660 1.4440 -0.1101 5 6 4.2311 0.5985 0.9453 6 8 4.6666 -0.4966 0.6594 7 7 4.3418 1.0595 2.2070 8 6 5.0897 0.2905 3.2047 9 6 5.0624 1.0299 4.5439 10 6 5.7030 2.4094 4.3780 11 6 3.6133 1.1929 5.0069 12 6 5.8429 0.2265 5.5861 13 6 5.8154 0.9545 6.9053 14 1 5.2931 1.8958 6.9918 15 6 6.4571 0.4188 8.0018 16 7 7.0927 -0.7278 7.8966 17 14 6.4224 1.3209 9.6372 18 1 5.6463 2.5786 9.4924 19 1 5.7830 0.4595 10.6641 20 1 7.8108 1.6417 10.0551 21 6 4.1725 2.8507 -0.2451 22 6 5.1483 2.2462 -1.2685 23 6 4.0811 1.1709 -1.5331 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7421 1.9333 0.9266 30 1 1.6139 1.9784 -0.8482 31 1 3.9264 1.9003 2.4543 32 1 4.6336 -0.6924 3.3225 33 1 6.1222 0.1748 2.8751 34 1 5.1465 2.9815 3.6356 35 1 5.6831 2.9363 5.3320 36 1 6.7353 2.2933 4.0482 37 1 3.1568 0.2102 5.1251 38 1 3.5937 1.7200 5.9608 39 1 3.0568 1.7651 4.2645 40 1 5.3861 -0.7561 5.7041 41 1 6.8753 0.1099 5.2565 42 1 7.5444 -1.1044 8.6679 43 1 4.6578 3.2060 0.6638 44 1 3.4886 3.5832 -0.6738 45 1 5.3385 2.8927 -2.1252 46 1 6.0619 1.8540 -0.8218 47 1 3.3713 1.4431 -2.3142 48 1 4.4928 0.1701 -1.6639 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359759993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:48 Heat of formation + Delta-G solvation = -75.122645 kcal Electronic energy + Delta-G solvation = -23321.786766 eV Core-core repulsion = 20182.120999 eV Total energy + Delta-G solvation = -3139.665766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.82686 -39.35186 -38.07735 -35.27025 -35.19273 -33.90059 -29.76601 -29.04181 -27.97810 -27.76919 -26.48986 -25.37243 -24.35814 -22.78014 -21.76865 -20.51213 -19.36839 -18.38441 -17.46074 -17.01226 -16.82696 -16.43680 -15.94362 -15.72606 -15.61540 -14.87721 -14.76897 -14.58040 -14.37556 -14.04150 -13.95369 -13.69594 -13.32050 -13.21951 -13.14356 -12.89485 -12.70003 -12.60812 -12.40021 -12.36105 -12.24268 -12.05400 -11.96601 -11.81246 -11.62870 -11.55482 -11.13377 -11.08663 -10.97443 -10.88895 -10.59836 -10.53069 -10.05490 -8.14733 -6.22807 1.41627 1.42563 1.54485 1.66230 2.21780 2.44744 3.19922 3.43091 3.60122 3.74349 3.91152 3.93610 4.05483 4.07644 4.17493 4.20821 4.28073 4.42679 4.67600 4.69208 4.74331 4.76633 4.81969 4.83730 4.88636 4.92680 4.95056 5.00284 5.05836 5.09696 5.11050 5.14672 5.21304 5.28249 5.38359 5.39359 5.45551 5.47569 5.48422 5.50645 5.52227 5.56864 5.78585 5.88962 6.29264 6.61363 6.92649 7.29286 7.45266 8.98156 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024885 B = 0.003720 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.886502 B = 7524.647770 C = 7876.859590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.090 4.090 4 C -0.109 4.109 5 C 0.532 3.468 6 O -0.590 6.590 7 N -0.707 5.707 8 C 0.142 3.858 9 C -0.063 4.063 10 C -0.120 4.120 11 C -0.121 4.121 12 C 0.040 3.960 13 C -0.512 4.512 14 H 0.074 0.926 15 C -0.006 4.006 16 N -0.940 5.940 17 Si 0.959 3.041 18 H -0.255 1.255 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.116 4.116 22 C -0.146 4.146 23 C -0.117 4.117 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.412 0.588 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.057 0.943 39 H 0.069 0.931 40 H -0.017 1.017 41 H -0.015 1.015 42 H 0.259 0.741 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.092 0.908 46 H 0.053 0.947 47 H 0.116 0.884 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 11.125 -18.477 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.128 4.128 4 C -0.112 4.112 5 C 0.320 3.680 6 O -0.470 6.470 7 N -0.359 5.359 8 C 0.018 3.982 9 C -0.064 4.064 10 C -0.178 4.178 11 C -0.178 4.178 12 C 0.002 3.998 13 C -0.550 4.550 14 H 0.092 0.908 15 C -0.202 4.202 16 N -0.581 5.581 17 Si 0.785 3.215 18 H -0.179 1.179 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.153 4.153 22 C -0.184 4.184 23 C -0.154 4.154 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.250 0.750 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.142 0.858 45 H 0.111 0.889 46 H 0.072 0.928 47 H 0.134 0.866 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.899 10.253 -18.566 24.318 hybrid contribution 0.628 -0.464 1.469 1.664 sum -11.271 9.788 -17.097 22.696 Atomic orbital electron populations 1.21731 0.94196 1.01761 1.02656 1.21502 0.97034 0.97276 1.00686 1.21557 0.90048 0.96776 1.04411 1.22045 0.97080 0.97456 0.94584 1.20665 0.77901 0.86138 0.83319 1.90658 1.51082 1.23319 1.81942 1.45944 1.54589 1.26044 1.09369 1.21181 0.94720 0.94303 0.88022 1.20696 0.97209 0.96349 0.92138 1.21685 0.99337 0.95071 1.01673 1.21686 0.93924 1.00822 1.01361 1.18973 0.93292 0.94002 0.93518 1.21620 1.31810 1.06790 0.94804 0.90780 1.25966 0.95416 0.95779 1.03085 1.70138 1.36259 1.20245 1.31454 0.85478 0.77740 0.79040 0.79281 1.17872 1.21089 1.21049 1.23069 0.98389 0.93832 1.00009 1.22836 0.96684 0.98465 1.00386 1.22935 0.98753 0.99247 0.94507 0.90977 0.93308 0.92344 0.92619 0.95292 0.90495 0.87836 0.75031 0.94148 0.93906 0.91129 0.92415 0.94468 0.94655 0.92369 0.91236 0.99820 0.99702 0.93190 0.91141 0.85830 0.88896 0.92850 0.86607 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.13 -2.55 5.52 30.59 0.17 -2.38 16 3 C -0.09 -1.39 4.68 30.59 0.14 -1.24 16 4 C -0.11 -2.13 0.82 -52.40 -0.04 -2.17 16 5 C 0.53 15.79 5.22 87.66 0.46 16.25 16 6 O -0.59 -23.31 16.14 -3.02 -0.05 -23.36 16 7 N -0.71 -20.14 4.71 -463.07 -2.18 -22.32 16 8 C 0.14 5.25 4.57 86.38 0.39 5.65 16 9 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 10 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 11 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 12 C 0.04 2.05 4.04 29.85 0.12 2.17 16 13 C -0.51 -27.52 7.65 25.60 0.20 -27.32 16 14 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 15 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 16 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 17 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C -0.12 -1.67 7.14 31.12 0.22 -1.45 16 22 C -0.15 -2.55 7.80 31.12 0.24 -2.30 16 23 C -0.12 -2.20 6.91 31.12 0.22 -1.98 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 1.20 7.95 -2.39 -0.02 1.18 16 28 H 0.03 0.76 7.43 -2.38 -0.02 0.75 16 29 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.10 1.02 8.05 -2.39 -0.02 1.01 16 31 H 0.41 9.20 5.90 -92.71 -0.55 8.66 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 35 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 39 H 0.07 1.78 6.86 -2.38 -0.02 1.76 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 42 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 43 H 0.07 1.08 7.70 -2.39 -0.02 1.06 16 44 H 0.12 1.03 8.10 -2.39 -0.02 1.01 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.12 1.48 8.04 -2.39 -0.02 1.46 16 48 H 0.05 1.26 7.42 -2.38 -0.02 1.24 16 Total: -1.00 -70.30 370.60 4.86 -65.44 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.36 Total: 17.48 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 4.42 Total: -25.59 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.90 Total: -79.59 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.30 4.86 -65.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.685 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds