Wall clock time and date at job start Tue Mar 31 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53006 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47522 * 295.00072 * 5 4 3 7 7 C 1.53002 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47328 * 59.99669 * 7 6 5 9 9 N 1.46497 * 109.47004 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99721 * 274.99858 * 9 8 7 11 11 O 1.21276 * 120.00085 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99710 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.47221 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47221 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99587 * 359.97438 * 14 13 12 16 16 C 1.37867 * 119.99982 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00138 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00180 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46867 * 60.00287 * 18 16 14 20 20 H 1.48505 * 109.47530 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47270 * 300.00289 * 18 16 14 22 22 C 1.52998 * 109.47109 * 300.00806 * 8 7 6 23 23 C 1.52993 * 109.47626 * 59.99289 * 22 8 7 24 24 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 26 26 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 27 27 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 28 28 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 29 29 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 30 30 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 32 32 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 33 33 H 1.09002 * 109.47016 * 55.00506 * 5 4 3 34 34 H 1.09002 * 109.47330 * 300.00242 * 6 5 4 35 35 H 1.09000 * 109.47130 * 60.00256 * 6 5 4 36 36 H 1.09002 * 109.46816 * 300.00220 * 7 6 5 37 37 H 1.09000 * 109.47511 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.46638 * 60.00016 * 8 7 6 39 39 H 0.96998 * 120.00198 * 95.00436 * 9 8 7 40 40 H 1.09007 * 109.46849 * 299.99704 * 12 10 9 41 41 H 1.08996 * 109.47526 * 59.99498 * 12 10 9 42 42 H 1.09007 * 109.46566 * 299.99385 * 13 12 10 43 43 H 1.08991 * 109.47245 * 59.99268 * 13 12 10 44 44 H 0.96995 * 120.00041 * 180.02562 * 17 16 14 45 45 H 1.09007 * 109.46726 * 299.99156 * 22 8 7 46 46 H 1.09000 * 109.46821 * 180.02562 * 22 8 7 47 47 H 1.09000 * 109.47453 * 179.97438 * 23 22 8 48 48 H 1.09007 * 109.47176 * 60.00143 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 3.6759 3.5682 -1.3078 7 6 4.1864 5.0105 -1.3087 8 6 5.7113 5.0119 -1.1826 9 7 6.2000 6.3930 -1.1828 10 6 6.4251 7.0279 -2.3502 11 8 6.2227 6.4561 -3.4003 12 6 6.9284 8.4484 -2.3504 13 6 7.0982 8.9291 -3.7930 14 6 7.6021 10.3494 -3.7932 15 1 7.7827 10.8584 -2.8580 16 6 7.8325 10.9989 -4.9873 17 7 7.6121 10.3791 -6.1262 18 14 8.4564 12.7596 -4.9877 19 1 9.7646 12.8213 -4.2875 20 1 8.6226 13.2257 -6.3879 21 1 7.4789 13.6313 -4.2880 22 6 6.1154 4.3285 0.1253 23 6 5.6049 2.8863 0.1261 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 0.8908 32 1 3.9338 0.9284 -0.8891 33 1 3.6451 3.4244 0.8414 34 1 4.1108 3.0287 -2.1492 35 1 2.5896 3.5669 -1.3978 36 1 3.7518 5.5503 -0.4673 37 1 3.8981 5.4975 -2.2403 38 1 6.1459 4.4721 -2.0240 39 1 6.3616 6.8504 -0.3429 40 1 6.2107 9.0882 -1.8368 41 1 7.8885 8.4939 -1.8365 42 1 7.8157 8.2894 -4.3070 43 1 6.1380 8.8837 -4.3065 44 1 7.7746 10.8360 -6.9663 45 1 5.6808 4.8684 0.9667 46 1 7.2017 4.3300 0.2153 47 1 5.8932 2.3993 1.0577 48 1 6.0395 2.3465 -0.7153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360046732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:04 Heat of formation + Delta-G solvation = -101.640445 kcal Electronic energy + Delta-G solvation = -21895.456706 eV Core-core repulsion = 18754.641041 eV Total energy + Delta-G solvation = -3140.815665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.81987 -38.38025 -35.98442 -33.93407 -33.40474 -31.49851 -30.93666 -30.59713 -27.89492 -25.64278 -23.97321 -22.96877 -21.89729 -21.19014 -20.62212 -20.12426 -19.32830 -16.84301 -16.20414 -15.90579 -15.56551 -14.98852 -14.62972 -14.44091 -14.41414 -14.37396 -13.92032 -13.37803 -13.28962 -12.95318 -12.80470 -12.41106 -12.31118 -12.14038 -12.07828 -11.67471 -11.41653 -11.36079 -11.23814 -11.12699 -11.04714 -10.88926 -10.78395 -10.61764 -10.59967 -10.29610 -10.13921 -9.91448 -9.62380 -9.13604 -8.93652 -8.67318 -8.29219 -5.93532 -3.97942 3.32589 3.35945 3.40292 3.41985 3.60659 4.34329 4.49422 4.50476 4.60233 4.69032 4.82335 4.86939 4.95660 5.12379 5.19390 5.26755 5.32532 5.35179 5.40547 5.41076 5.46889 5.52955 5.56404 5.58037 5.65836 5.70801 5.74925 5.82087 5.89079 5.90235 5.99385 6.02277 6.08783 6.14426 6.17803 6.26739 6.28161 6.34387 6.39662 6.87540 6.94279 7.76901 7.89978 7.98542 8.10416 8.41916 8.86511 9.10874 9.65322 11.17381 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039886 B = 0.002393 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.833473 B =11695.884878 C =12072.332544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.088 4.088 6 C -0.112 4.112 7 C -0.129 4.129 8 C 0.145 3.855 9 N -0.742 5.742 10 C 0.510 3.490 11 O -0.535 6.535 12 C -0.131 4.131 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.125 4.125 23 C -0.110 4.110 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.395 0.605 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 -19.314 17.190 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.107 4.107 6 C -0.150 4.150 7 C -0.168 4.168 8 C 0.040 3.960 9 N -0.395 5.395 10 C 0.298 3.702 11 O -0.411 6.411 12 C -0.171 4.171 13 C 0.000 4.000 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.163 4.163 23 C -0.148 4.148 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.229 0.771 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.880 -19.698 16.193 27.347 hybrid contribution 0.399 1.227 0.378 1.344 sum -9.481 -18.471 16.571 26.564 Atomic orbital electron populations 1.21784 0.96042 1.01442 1.01832 1.21545 0.95751 0.97183 1.01831 1.21685 0.95572 0.96497 1.02236 1.21643 0.95306 0.96377 1.01909 1.21213 0.95356 0.95736 0.98356 1.21593 1.00666 0.95430 0.97270 1.21928 0.95618 0.96754 1.02524 1.20863 0.93789 0.83093 0.98256 1.46294 1.69680 1.14385 1.09102 1.21536 0.76147 0.89644 0.82859 1.90657 1.50918 1.68066 1.31419 1.21866 1.00809 0.89906 1.04508 1.18885 0.98145 0.95227 0.87748 1.21196 1.44723 0.98324 0.92321 0.92680 1.25030 0.95692 0.98046 0.95667 1.69990 1.48505 1.37098 0.97268 0.86648 0.79326 0.84967 0.76946 1.20274 1.21296 1.20268 1.21792 1.01133 0.96184 0.97198 1.21524 0.95263 0.95990 1.02004 0.92953 0.92845 0.92709 0.92114 0.92270 0.92172 0.91615 0.92168 0.91945 0.91247 0.91796 0.91701 0.92122 0.91256 0.89839 0.77144 0.90361 0.90355 0.95870 0.95870 0.92916 0.91619 0.91410 0.91782 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.85 4.97 -26.73 -0.13 -0.98 16 4 C -0.11 -0.82 4.68 -26.73 -0.13 -0.95 16 5 C -0.09 -0.71 2.19 -90.62 -0.20 -0.91 16 6 C -0.11 -1.10 4.96 -26.73 -0.13 -1.23 16 7 C -0.13 -1.57 5.49 -26.73 -0.15 -1.72 16 8 C 0.14 1.85 2.45 -67.93 -0.17 1.68 16 9 N -0.74 -10.62 5.08 -53.80 -0.27 -10.89 16 10 C 0.51 9.99 7.79 -10.98 -0.09 9.91 16 11 O -0.54 -12.83 15.65 5.56 0.09 -12.75 16 12 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 13 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 14 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.13 -1.17 5.39 -26.74 -0.14 -1.32 16 23 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 39 H 0.40 4.47 8.60 -40.82 -0.35 4.12 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -33.27 376.44 -9.97 -43.24 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -9.42 Total: -1.15 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.75 Total: -13.97 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.46 Total: -37.92 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.27 -9.97 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360046732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.401 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds