Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 C 1.52996 * 109.47154 * 120.00039 * 2 1 3 5 5 C 1.53005 * 109.46852 * 65.00406 * 4 2 1 6 6 C 1.53004 * 109.47063 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.01831 * 54.92964 * 6 5 4 8 8 C 1.54268 * 110.02863 * 293.54491 * 6 5 4 9 9 C 1.54897 * 104.19359 * 217.10524 * 8 6 5 10 10 C 1.54882 * 102.74839 * 37.94171 * 9 8 6 11 11 C 1.53876 * 110.03340 * 176.37816 * 6 5 4 12 12 H 1.08994 * 110.02975 * 238.56631 * 11 6 5 13 13 N 1.46499 * 110.03009 * 359.94932 * 11 6 5 14 14 C 1.34774 * 119.99976 * 204.99839 * 13 11 6 15 15 O 1.21282 * 119.99882 * 0.02562 * 14 13 11 16 16 C 1.50693 * 120.00195 * 180.02562 * 14 13 11 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47324 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99997 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99792 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47078 * 89.99643 * 22 20 18 24 24 H 1.48502 * 109.47187 * 209.99798 * 22 20 18 25 25 H 1.48502 * 109.47026 * 329.99544 * 22 20 18 26 26 H 1.08995 * 109.46711 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46662 * 299.99427 * 1 2 3 28 28 H 1.08994 * 109.46723 * 59.99872 * 1 2 3 29 29 H 1.08998 * 109.47159 * 240.00626 * 2 1 3 30 30 H 1.09005 * 109.47223 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47412 * 300.00464 * 3 2 1 32 32 H 1.08998 * 109.46672 * 60.00328 * 3 2 1 33 33 H 1.08998 * 109.47396 * 305.00043 * 4 2 1 34 34 H 1.09000 * 109.47144 * 184.99678 * 4 2 1 35 35 H 1.08998 * 109.47416 * 59.99650 * 5 4 2 36 36 H 1.08999 * 109.47128 * 299.99355 * 5 4 2 37 37 H 1.08999 * 110.49069 * 98.43040 * 8 6 5 38 38 H 1.08996 * 110.48777 * 335.78344 * 8 6 5 39 39 H 1.08994 * 110.75328 * 156.26004 * 9 8 6 40 40 H 1.09004 * 110.75215 * 279.62712 * 9 8 6 41 41 H 1.09003 * 110.48391 * 80.73538 * 10 9 8 42 42 H 1.09004 * 110.48801 * 203.38079 * 10 9 8 43 43 H 0.97006 * 120.00263 * 25.00297 * 13 11 6 44 44 H 1.09004 * 109.47149 * 300.00244 * 16 14 13 45 45 H 1.09003 * 109.47377 * 60.00215 * 16 14 13 46 46 H 1.09004 * 109.46867 * 300.00020 * 17 16 14 47 47 H 1.08993 * 109.47400 * 60.00011 * 17 16 14 48 48 H 0.96997 * 119.99618 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1878 6 6 2.1459 -2.9170 2.4367 7 1 1.7888 -2.4096 3.3329 8 6 3.6881 -2.9563 2.4309 9 6 4.0348 -4.3440 3.0253 10 6 2.9377 -5.2572 2.4242 11 6 1.6688 -4.3799 2.4325 12 1 1.0801 -4.5832 3.3270 13 7 0.8677 -4.6429 1.2344 14 6 -0.0469 -5.6328 1.2393 15 8 -0.2071 -6.3055 2.2357 16 6 -0.8705 -5.9038 0.0068 17 6 -1.8249 -7.0687 0.2771 18 6 -2.6481 -7.3402 -0.9558 19 1 -2.5052 -6.7414 -1.8431 20 6 -3.5844 -8.3522 -0.9504 21 7 -3.7587 -9.0810 0.1304 22 14 -4.6053 -8.6882 -2.4782 23 1 -3.9040 -9.6785 -3.3342 24 1 -5.9299 -9.2284 -2.0796 25 1 -4.7935 -7.4247 -3.2355 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3632 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 3.1301 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6055 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2725 1.1420 37 1 4.0924 -2.1612 3.0572 38 1 4.0680 -2.8717 1.4127 39 1 5.0249 -4.6659 2.7026 40 1 3.9689 -4.3256 4.1132 41 1 3.1965 -5.5441 1.4050 42 1 2.7944 -6.1411 3.0457 43 1 0.9956 -4.1047 0.4376 44 1 -1.4466 -5.0142 -0.2481 45 1 -0.2106 -6.1592 -0.8223 46 1 -1.2491 -7.9585 0.5322 47 1 -2.4848 -6.8130 1.1060 48 1 -4.4172 -9.7933 0.1340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360141990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = -86.452917 kcal Electronic energy + Delta-G solvation = -22590.666837 eV Core-core repulsion = 19450.509753 eV Total energy + Delta-G solvation = -3140.157084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00470 -38.11584 -36.58806 -33.42408 -33.32194 -31.89801 -30.92240 -27.77227 -27.47712 -27.16670 -25.36053 -23.37024 -21.87926 -20.82718 -20.30048 -19.54804 -19.04012 -16.95616 -16.00191 -15.94832 -15.56960 -15.11573 -14.85358 -14.46294 -14.43292 -14.14288 -14.11434 -13.26272 -13.12154 -12.92815 -12.48434 -12.44351 -12.23992 -12.08628 -11.77620 -11.61811 -11.40640 -11.22445 -11.11600 -11.11189 -10.91681 -10.85084 -10.75959 -10.72270 -10.57264 -10.45050 -10.31797 -9.91848 -9.61909 -9.12654 -8.93967 -8.64774 -8.29305 -5.93616 -3.97847 3.33373 3.34863 3.40600 3.43254 3.65932 4.35289 4.47476 4.49736 4.50891 4.69244 4.74837 4.85419 5.07502 5.22348 5.26173 5.36158 5.39842 5.41223 5.45071 5.47824 5.52856 5.57525 5.58915 5.63485 5.66053 5.71151 5.78565 5.80512 5.86503 5.92517 5.96245 6.01105 6.15702 6.18363 6.22992 6.25325 6.26896 6.29117 6.33517 6.91506 6.94449 7.77405 7.90291 7.99378 8.10593 8.42122 8.87991 9.11232 9.65485 11.17362 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.003666 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.535586 B = 7636.610849 C = 9134.276345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.098 4.098 7 H 0.078 0.922 8 C -0.117 4.117 9 C -0.125 4.125 10 C -0.135 4.135 11 C 0.144 3.856 12 H 0.087 0.913 13 N -0.739 5.739 14 C 0.508 3.492 15 O -0.536 6.536 16 C -0.131 4.131 17 C 0.038 3.962 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.397 0.603 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 19.508 2.193 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.117 4.117 7 H 0.096 0.904 8 C -0.154 4.154 9 C -0.163 4.163 10 C -0.174 4.174 11 C 0.038 3.962 12 H 0.105 0.895 13 N -0.395 5.395 14 C 0.296 3.704 15 O -0.411 6.411 16 C -0.171 4.171 17 C 0.000 4.000 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.234 0.766 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.894 18.861 2.992 24.846 hybrid contribution -0.522 -0.004 -1.180 1.290 sum 15.372 18.857 1.812 24.396 Atomic orbital electron populations 1.21910 0.95116 1.02284 1.01546 1.21141 0.96081 0.95966 0.98533 1.21843 1.00712 0.96276 1.01621 1.21655 1.00711 0.94904 0.97685 1.21754 1.01764 0.94899 0.97347 1.22045 0.95707 0.94903 0.99040 0.90378 1.22437 0.94757 0.97181 1.01058 1.22468 0.98476 0.95113 1.00210 1.22798 0.94467 0.98513 1.01587 1.21503 0.91769 0.93130 0.89753 0.89508 1.46554 1.40258 1.36928 1.15768 1.21555 0.79181 0.78630 0.91038 1.90656 1.67433 1.47720 1.35318 1.21858 0.98507 1.03009 0.93702 1.18884 0.92899 0.91317 0.96886 1.21233 1.20086 1.16499 0.98652 0.92650 1.25027 0.97213 0.96115 0.96061 1.70002 1.34673 1.20651 1.27531 0.86597 0.79689 0.78445 0.83250 1.20690 1.21236 1.19893 0.92056 0.92837 0.92917 0.91261 0.92908 0.92854 0.92845 0.92066 0.91971 0.91735 0.90787 0.91758 0.91433 0.91616 0.91483 0.91253 0.91201 0.76592 0.90426 0.90424 0.95882 0.95863 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.95 37.16 0.33 -0.90 16 2 C -0.10 -0.74 2.92 -90.62 -0.26 -1.00 16 3 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 4 C -0.11 -0.83 4.52 -26.73 -0.12 -0.96 16 5 C -0.12 -1.03 2.96 -26.73 -0.08 -1.11 16 6 C -0.10 -0.92 2.94 -89.50 -0.26 -1.18 16 7 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.12 -0.95 5.46 -25.07 -0.14 -1.08 16 9 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 10 C -0.13 -1.63 6.53 -25.07 -0.16 -1.79 16 11 C 0.14 1.84 3.22 -66.81 -0.22 1.62 16 12 H 0.09 1.32 7.56 -51.93 -0.39 0.92 16 13 N -0.74 -10.54 4.41 -52.73 -0.23 -10.77 16 14 C 0.51 9.93 7.83 -10.99 -0.09 9.84 16 15 O -0.54 -12.83 15.64 5.56 0.09 -12.75 16 16 C -0.13 -2.70 5.64 -27.89 -0.16 -2.86 16 17 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 18 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.44 7.46 -51.93 -0.39 0.05 16 35 H 0.06 0.54 7.06 -51.93 -0.37 0.17 16 36 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.53 7.78 -51.93 -0.40 0.13 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.40 4.64 5.88 -40.82 -0.24 4.40 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -33.13 372.63 -9.49 -42.62 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -9.16 Total: -0.24 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.51 Total: -14.31 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.50 Total: -37.77 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.13 -9.49 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360141990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.836 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds