Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 C 1.52996 * 109.47154 * 120.00039 * 2 1 3 5 5 C 1.53005 * 109.46852 * 65.00406 * 4 2 1 6 6 C 1.53004 * 109.47063 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.01831 * 54.92964 * 6 5 4 8 8 C 1.54268 * 110.02863 * 293.54491 * 6 5 4 9 9 C 1.54897 * 104.19359 * 217.10524 * 8 6 5 10 10 C 1.54882 * 102.74839 * 37.94171 * 9 8 6 11 11 C 1.53876 * 110.03340 * 176.37816 * 6 5 4 12 12 H 1.08994 * 110.02975 * 238.56631 * 11 6 5 13 13 N 1.46499 * 110.03009 * 359.94932 * 11 6 5 14 14 C 1.34774 * 119.99976 * 204.99839 * 13 11 6 15 15 O 1.21282 * 119.99882 * 0.02562 * 14 13 11 16 16 C 1.50693 * 120.00195 * 180.02562 * 14 13 11 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47324 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99997 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99792 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47078 * 89.99643 * 22 20 18 24 24 H 1.48502 * 109.47187 * 209.99798 * 22 20 18 25 25 H 1.48502 * 109.47026 * 329.99544 * 22 20 18 26 26 H 1.08995 * 109.46711 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46662 * 299.99427 * 1 2 3 28 28 H 1.08994 * 109.46723 * 59.99872 * 1 2 3 29 29 H 1.08998 * 109.47159 * 240.00626 * 2 1 3 30 30 H 1.09005 * 109.47223 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47412 * 300.00464 * 3 2 1 32 32 H 1.08998 * 109.46672 * 60.00328 * 3 2 1 33 33 H 1.08998 * 109.47396 * 305.00043 * 4 2 1 34 34 H 1.09000 * 109.47144 * 184.99678 * 4 2 1 35 35 H 1.08998 * 109.47416 * 59.99650 * 5 4 2 36 36 H 1.08999 * 109.47128 * 299.99355 * 5 4 2 37 37 H 1.08999 * 110.49069 * 98.43040 * 8 6 5 38 38 H 1.08996 * 110.48777 * 335.78344 * 8 6 5 39 39 H 1.08994 * 110.75328 * 156.26004 * 9 8 6 40 40 H 1.09004 * 110.75215 * 279.62712 * 9 8 6 41 41 H 1.09003 * 110.48391 * 80.73538 * 10 9 8 42 42 H 1.09004 * 110.48801 * 203.38079 * 10 9 8 43 43 H 0.97006 * 120.00263 * 25.00297 * 13 11 6 44 44 H 1.09004 * 109.47149 * 300.00244 * 16 14 13 45 45 H 1.09003 * 109.47377 * 60.00215 * 16 14 13 46 46 H 1.09004 * 109.46867 * 300.00020 * 17 16 14 47 47 H 1.08993 * 109.47400 * 60.00011 * 17 16 14 48 48 H 0.96997 * 119.99618 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1878 6 6 2.1459 -2.9170 2.4367 7 1 1.7888 -2.4096 3.3329 8 6 3.6881 -2.9563 2.4309 9 6 4.0348 -4.3440 3.0253 10 6 2.9377 -5.2572 2.4242 11 6 1.6688 -4.3799 2.4325 12 1 1.0801 -4.5832 3.3270 13 7 0.8677 -4.6429 1.2344 14 6 -0.0469 -5.6328 1.2393 15 8 -0.2071 -6.3055 2.2357 16 6 -0.8705 -5.9038 0.0068 17 6 -1.8249 -7.0687 0.2771 18 6 -2.6481 -7.3402 -0.9558 19 1 -2.5052 -6.7414 -1.8431 20 6 -3.5844 -8.3522 -0.9504 21 7 -3.7587 -9.0810 0.1304 22 14 -4.6053 -8.6882 -2.4782 23 1 -3.9040 -9.6785 -3.3342 24 1 -5.9299 -9.2284 -2.0796 25 1 -4.7935 -7.4247 -3.2355 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3632 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 3.1301 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6055 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2725 1.1420 37 1 4.0924 -2.1612 3.0572 38 1 4.0680 -2.8717 1.4127 39 1 5.0249 -4.6659 2.7026 40 1 3.9689 -4.3256 4.1132 41 1 3.1965 -5.5441 1.4050 42 1 2.7944 -6.1411 3.0457 43 1 0.9956 -4.1047 0.4376 44 1 -1.4466 -5.0142 -0.2481 45 1 -0.2106 -6.1592 -0.8223 46 1 -1.2491 -7.9585 0.5322 47 1 -2.4848 -6.8130 1.1060 48 1 -4.4172 -9.7933 0.1340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360141990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = -105.356810 kcal Electronic energy + Delta-G solvation = -22591.486572 eV Core-core repulsion = 19450.509753 eV Total energy + Delta-G solvation = -3140.976818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21623 -39.37000 -37.28523 -35.56512 -34.64165 -32.93074 -32.63899 -29.03301 -28.12802 -27.84992 -27.20565 -24.11124 -23.76497 -21.72601 -21.33890 -20.63747 -20.05564 -18.84275 -17.62522 -17.10603 -16.51429 -16.43208 -16.26446 -16.06717 -15.32440 -15.13362 -14.93901 -14.56520 -14.27747 -14.11255 -13.86142 -13.66004 -13.25537 -13.07424 -12.94469 -12.84451 -12.78393 -12.46761 -12.29905 -12.14347 -11.97812 -11.91766 -11.87861 -11.63709 -11.61461 -11.48575 -11.37940 -11.30426 -11.11625 -11.06395 -10.67753 -10.57319 -9.96353 -8.18195 -6.32506 1.41667 1.44729 1.55666 1.74421 2.30492 2.46084 3.14625 3.52243 3.69343 3.76404 4.07217 4.09703 4.13844 4.16349 4.36091 4.47250 4.48688 4.51081 4.54342 4.58932 4.60044 4.76959 4.80274 4.83025 4.88376 4.94088 4.96656 5.03847 5.05439 5.08030 5.15897 5.20075 5.22833 5.27440 5.33327 5.35800 5.44363 5.48378 5.50692 5.59003 5.62252 5.62726 5.68973 5.85352 6.17476 6.64905 6.86058 7.37274 7.40154 8.94581 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.003666 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.535586 B = 7636.610849 C = 9134.276345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.119 4.119 6 C -0.089 4.089 7 H 0.081 0.919 8 C -0.108 4.108 9 C -0.118 4.118 10 C -0.137 4.137 11 C 0.137 3.863 12 H 0.057 0.943 13 N -0.712 5.712 14 C 0.508 3.492 15 O -0.591 6.591 16 C -0.120 4.120 17 C 0.044 3.956 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.938 5.938 22 Si 0.975 3.025 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.255 1.255 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.414 0.586 44 H 0.102 0.898 45 H 0.102 0.898 46 H -0.020 1.020 47 H -0.019 1.019 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.607 21.860 0.102 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.108 4.108 7 H 0.100 0.900 8 C -0.145 4.145 9 C -0.156 4.156 10 C -0.176 4.176 11 C 0.032 3.968 12 H 0.075 0.925 13 N -0.367 5.367 14 C 0.296 3.704 15 O -0.471 6.471 16 C -0.160 4.160 17 C 0.006 3.994 18 C -0.581 4.581 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.178 1.178 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.254 0.746 44 H 0.120 0.880 45 H 0.120 0.880 46 H -0.001 1.001 47 H -0.001 1.001 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.396 21.279 0.870 27.498 hybrid contribution -0.954 -0.729 -0.471 1.290 sum 16.442 20.550 0.400 26.321 Atomic orbital electron populations 1.21927 0.95943 1.01656 1.01521 1.21136 0.95352 0.96552 0.98591 1.21827 1.01186 0.95650 1.01665 1.21591 1.01431 0.93638 0.97595 1.21733 1.00954 0.95927 0.97045 1.22000 0.96990 0.91994 0.99804 0.90030 1.22424 0.93152 0.96896 1.02073 1.22451 0.97848 0.94942 1.00320 1.22769 0.95306 0.98161 1.01314 1.21691 0.91360 0.96109 0.87652 0.92512 1.46292 1.38440 1.34952 1.17057 1.21354 0.79883 0.79242 0.89881 1.90643 1.69344 1.50097 1.36978 1.21638 0.98125 1.01248 0.94991 1.18667 0.93059 0.92278 0.95394 1.21718 1.20150 1.16805 0.99420 0.90599 1.26160 0.98750 0.95777 0.99840 1.70186 1.35685 1.21475 1.30475 0.85305 0.77317 0.79049 0.78476 1.19666 1.21165 1.17837 0.92959 0.93060 0.92808 0.91085 0.92132 0.92797 0.92888 0.92252 0.90686 0.90953 0.92131 0.89739 0.90331 0.90151 0.91215 0.91346 0.93797 0.74587 0.87955 0.87958 1.00107 1.00064 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.95 71.98 0.64 -1.63 16 2 C -0.10 -1.22 2.92 -10.79 -0.03 -1.25 16 3 C -0.15 -1.61 9.19 71.98 0.66 -0.94 16 4 C -0.11 -1.26 4.52 30.59 0.14 -1.12 16 5 C -0.12 -1.75 2.96 30.60 0.09 -1.66 16 6 C -0.09 -1.49 2.94 -10.07 -0.03 -1.52 16 7 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 8 C -0.11 -1.39 5.46 31.67 0.17 -1.22 16 9 C -0.12 -1.90 6.91 31.89 0.22 -1.68 16 10 C -0.14 -3.27 6.53 31.67 0.21 -3.07 16 11 C 0.14 3.49 3.22 45.72 0.15 3.63 16 12 H 0.06 1.81 7.56 -2.39 -0.02 1.80 16 13 N -0.71 -20.02 4.41 -439.11 -1.94 -21.96 16 14 C 0.51 20.40 7.83 87.66 0.69 21.08 16 15 O -0.59 -30.08 15.64 -3.04 -0.05 -30.13 16 16 C -0.12 -4.98 5.64 29.85 0.17 -4.81 16 17 C 0.04 2.49 4.26 29.85 0.13 2.62 16 18 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 19 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 20 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 21 N -0.94 -60.44 13.29 21.45 0.28 -60.16 16 22 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.25 -10.82 7.11 99.48 0.71 -10.12 16 26 H 0.05 0.86 6.57 -2.39 -0.02 0.84 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.75 7.46 -2.39 -0.02 0.73 16 35 H 0.07 0.97 7.06 -2.39 -0.02 0.95 16 36 H 0.06 1.08 5.93 -2.39 -0.01 1.06 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.90 7.78 -2.39 -0.02 0.88 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.41 8.90 5.88 -92.70 -0.54 8.36 16 44 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 45 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 46 H -0.02 -1.26 8.10 -2.38 -0.02 -1.28 16 47 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 48 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -76.00 372.63 4.58 -71.43 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.35 Total: 16.79 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 3.90 Total: -22.78 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.65 Total: -82.12 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -76.00 4.58 -71.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360141990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.929 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds