Wall clock time and date at job start Tue Mar 31 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 C 1.53002 * 109.47507 * 119.99504 * 2 1 3 5 5 C 1.53000 * 109.46717 * 65.00474 * 4 2 1 6 6 C 1.53004 * 109.47145 * 180.02562 * 5 4 2 7 7 H 1.08996 * 110.53482 * 307.60994 * 6 5 4 8 8 C 1.54889 * 110.48783 * 70.22408 * 6 5 4 9 9 C 1.54887 * 102.74821 * 156.62403 * 8 6 5 10 10 C 1.54272 * 104.19263 * 322.05316 * 9 8 6 11 11 C 1.53869 * 106.60112 * 23.61507 * 10 9 8 12 12 H 1.09003 * 110.03084 * 240.66582 * 11 10 9 13 13 N 1.46496 * 110.03394 * 119.27966 * 11 10 9 14 14 C 1.34775 * 119.99642 * 86.45639 * 13 11 10 15 15 O 1.21279 * 120.00300 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99773 * 180.02562 * 14 13 11 17 17 C 1.53006 * 109.47126 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47210 * 299.99614 * 1 2 3 28 28 H 1.09001 * 109.47230 * 60.00426 * 1 2 3 29 29 H 1.09001 * 109.47531 * 239.99951 * 2 1 3 30 30 H 1.09007 * 109.47198 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46864 * 299.99798 * 3 2 1 32 32 H 1.08995 * 109.47212 * 60.00394 * 3 2 1 33 33 H 1.08998 * 109.47131 * 305.00897 * 4 2 1 34 34 H 1.08995 * 109.47529 * 185.00015 * 4 2 1 35 35 H 1.08996 * 109.47647 * 60.00009 * 5 4 2 36 36 H 1.09007 * 109.47173 * 299.99888 * 5 4 2 37 37 H 1.09000 * 110.75697 * 38.30747 * 8 6 5 38 38 H 1.09003 * 110.75336 * 274.93605 * 8 6 5 39 39 H 1.09003 * 110.48227 * 203.38412 * 9 8 6 40 40 H 1.08992 * 110.48869 * 80.73495 * 9 8 6 41 41 H 1.08999 * 110.03166 * 264.32593 * 10 9 8 42 42 H 1.09000 * 110.02766 * 142.89810 * 10 9 8 43 43 H 0.96998 * 120.00192 * 266.45164 * 13 11 10 44 44 H 1.09001 * 109.46980 * 59.99839 * 16 14 13 45 45 H 1.09001 * 109.47354 * 299.99360 * 16 14 13 46 46 H 1.09001 * 109.47002 * 60.00244 * 17 16 14 47 47 H 1.08993 * 109.46955 * 299.99807 * 17 16 14 48 48 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6354 -2.1954 1.1880 6 6 2.1449 -2.9165 2.4376 7 1 3.2114 -2.7376 2.5741 8 6 1.3540 -2.4586 3.6881 9 6 1.5391 -3.6472 4.6637 10 6 1.4737 -4.8940 3.7575 11 6 1.8590 -4.4295 2.3421 12 1 1.0350 -4.6117 1.6522 13 7 3.0581 -5.1392 1.8900 14 6 2.9437 -6.3394 1.2876 15 8 1.8482 -6.8321 1.1204 16 6 4.1773 -7.0699 0.8230 17 6 3.7718 -8.3971 0.1786 18 6 5.0053 -9.1272 -0.2866 19 1 5.9809 -8.6887 -0.1372 20 6 4.8884 -10.3555 -0.9019 21 7 3.7004 -10.8897 -1.0834 22 14 6.4174 -11.2608 -1.4779 23 1 6.0239 -12.5489 -2.1034 24 1 7.3037 -11.5247 -0.3159 25 1 7.1403 -10.4285 -2.4728 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 2.0700 -2.6549 0.3003 36 1 0.5490 -2.2724 1.1421 37 1 0.3003 -2.3162 3.4481 38 1 1.7831 -1.5470 4.1041 39 1 0.7338 -3.6669 5.3981 40 1 2.5077 -3.5865 5.1598 41 1 0.4625 -5.3010 3.7547 42 1 2.1789 -5.6476 4.1080 43 1 3.9343 -4.7454 2.0240 44 1 4.8274 -7.2642 1.6761 45 1 4.7083 -6.4586 0.0932 46 1 3.1215 -8.2031 -0.6744 47 1 3.2411 -9.0081 0.9086 48 1 2.9065 -10.4197 -0.7840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360141998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:05 Heat of formation + Delta-G solvation = -99.426621 kcal Electronic energy + Delta-G solvation = -22283.023963 eV Core-core repulsion = 19142.304297 eV Total energy + Delta-G solvation = -3140.719666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88861 -38.23776 -36.67664 -33.76416 -33.39114 -31.96682 -30.81975 -27.78962 -27.50665 -27.27900 -24.97468 -23.10950 -21.94701 -20.90962 -20.34784 -19.82579 -19.34861 -16.94176 -16.56729 -15.98253 -15.55321 -15.34957 -14.71141 -14.36819 -14.34011 -14.03314 -13.80447 -13.67897 -13.30911 -12.77098 -12.60808 -12.45435 -12.33448 -12.10193 -11.95937 -11.73821 -11.67726 -11.40898 -11.23886 -11.03353 -10.96615 -10.80429 -10.73323 -10.70001 -10.56173 -10.43170 -10.12055 -10.08009 -9.89699 -9.19950 -8.74612 -8.50311 -8.26280 -6.29708 -3.99597 3.21624 3.45965 3.48962 3.56228 3.67819 4.24723 4.44108 4.55417 4.59809 4.64340 4.69099 4.75971 5.08352 5.17338 5.25436 5.30725 5.33705 5.36861 5.42418 5.45022 5.47955 5.49046 5.54719 5.55933 5.62407 5.65971 5.69017 5.75757 5.85963 5.91098 5.93369 5.96771 6.06489 6.13790 6.14072 6.16484 6.18575 6.21178 6.28459 6.78476 6.83512 7.55143 7.60629 7.88973 8.22728 8.52187 8.75876 8.95007 9.74092 11.11281 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.003056 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.963954 B = 9160.894553 C =10015.112092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.096 4.096 7 H 0.079 0.921 8 C -0.116 4.116 9 C -0.124 4.124 10 C -0.136 4.136 11 C 0.144 3.856 12 H 0.087 0.913 13 N -0.736 5.736 14 C 0.509 3.491 15 O -0.538 6.538 16 C -0.124 4.124 17 C 0.025 3.975 18 C -0.608 4.608 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.070 2.930 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.396 0.604 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.014 0.986 47 H 0.014 0.986 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 24.889 8.745 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.115 4.115 7 H 0.097 0.903 8 C -0.154 4.154 9 C -0.162 4.162 10 C -0.175 4.175 11 C 0.039 3.961 12 H 0.105 0.895 13 N -0.389 5.389 14 C 0.297 3.703 15 O -0.414 6.414 16 C -0.164 4.164 17 C -0.013 4.013 18 C -0.647 4.647 19 H 0.067 0.933 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.898 3.102 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.229 0.771 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.032 0.968 47 H 0.032 0.968 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.850 23.116 7.859 24.717 hybrid contribution -0.055 1.644 0.883 1.867 sum -3.905 24.760 8.742 26.547 Atomic orbital electron populations 1.21892 0.95337 1.01983 1.01435 1.21142 0.95934 0.96038 0.98711 1.21842 1.00889 0.96161 1.01546 1.21648 1.00662 0.95040 0.97605 1.21701 1.01286 0.94791 0.97375 1.22278 1.00355 0.93557 0.95311 0.90313 1.22529 1.00249 0.97751 0.94864 1.22354 1.01567 0.94659 0.97579 1.22591 1.02282 0.97794 0.94838 1.21583 0.88989 0.90097 0.95424 0.89459 1.46334 1.09038 1.21155 1.62419 1.21523 0.92466 0.80318 0.75965 1.90649 1.28973 1.66429 1.55338 1.21720 0.93968 0.99448 1.01241 1.19001 0.96977 0.89822 0.95458 1.22042 0.92926 1.06522 1.43184 0.93315 1.25850 1.02848 0.95502 0.94778 1.70732 0.98599 1.40905 1.44467 0.83540 0.74118 0.76208 0.76309 1.20768 1.21486 1.21481 0.92301 0.92853 0.92994 0.91237 0.92788 0.92872 0.92853 0.91927 0.92117 0.91728 0.91482 0.91219 0.91456 0.91744 0.91731 0.91387 0.91264 0.77056 0.90214 0.90204 0.96789 0.96790 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.95 37.16 0.33 -0.77 16 2 C -0.10 -0.76 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 4 C -0.11 -0.85 4.56 -26.73 -0.12 -0.97 16 5 C -0.11 -1.03 4.32 -26.73 -0.12 -1.14 16 6 C -0.10 -0.89 2.55 -88.96 -0.23 -1.11 16 7 H 0.08 0.68 7.73 -51.93 -0.40 0.28 16 8 C -0.12 -0.94 5.67 -24.74 -0.14 -1.08 16 9 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 10 C -0.14 -1.65 6.59 -25.61 -0.17 -1.81 16 11 C 0.14 1.82 2.79 -66.81 -0.19 1.64 16 12 H 0.09 1.31 7.30 -51.93 -0.38 0.93 16 13 N -0.74 -10.45 4.99 -52.72 -0.26 -10.71 16 14 C 0.51 9.92 7.82 -10.98 -0.09 9.84 16 15 O -0.54 -12.77 15.66 5.56 0.09 -12.68 16 16 C -0.12 -2.58 5.64 -27.88 -0.16 -2.74 16 17 C 0.02 0.68 3.57 -27.88 -0.10 0.58 16 18 C -0.61 -17.78 9.11 -34.44 -0.31 -18.10 16 19 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 20 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 21 N -0.91 -29.20 13.65 55.43 0.76 -28.44 16 22 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.44 7.55 -51.93 -0.39 0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.62 6.44 -51.93 -0.33 0.28 16 37 H 0.07 0.56 7.96 -51.93 -0.41 0.14 16 38 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 43 H 0.40 4.49 8.34 -40.82 -0.34 4.15 16 44 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 47 H 0.01 0.41 7.96 -51.93 -0.41 0.00 16 48 H 0.27 8.86 7.22 -40.82 -0.29 8.56 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -33.91 376.11 -9.56 -43.47 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -9.25 Total: 0.33 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.48 Total: -18.29 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.49 Total: -39.15 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.91 -9.56 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360141998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.957 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds