Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 C 1.53002 * 109.47507 * 119.99504 * 2 1 3 5 5 C 1.53000 * 109.46717 * 65.00474 * 4 2 1 6 6 C 1.53004 * 109.47145 * 180.02562 * 5 4 2 7 7 H 1.08996 * 110.53482 * 307.60994 * 6 5 4 8 8 C 1.54889 * 110.48783 * 70.22408 * 6 5 4 9 9 C 1.54887 * 102.74821 * 156.62403 * 8 6 5 10 10 C 1.54272 * 104.19263 * 322.05316 * 9 8 6 11 11 C 1.53869 * 106.60112 * 23.61507 * 10 9 8 12 12 H 1.09003 * 110.03084 * 240.66582 * 11 10 9 13 13 N 1.46496 * 110.03394 * 119.27966 * 11 10 9 14 14 C 1.34775 * 119.99642 * 86.45639 * 13 11 10 15 15 O 1.21279 * 120.00300 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99773 * 180.02562 * 14 13 11 17 17 C 1.53006 * 109.47126 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47210 * 299.99614 * 1 2 3 28 28 H 1.09001 * 109.47230 * 60.00426 * 1 2 3 29 29 H 1.09001 * 109.47531 * 239.99951 * 2 1 3 30 30 H 1.09007 * 109.47198 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46864 * 299.99798 * 3 2 1 32 32 H 1.08995 * 109.47212 * 60.00394 * 3 2 1 33 33 H 1.08998 * 109.47131 * 305.00897 * 4 2 1 34 34 H 1.08995 * 109.47529 * 185.00015 * 4 2 1 35 35 H 1.08996 * 109.47647 * 60.00009 * 5 4 2 36 36 H 1.09007 * 109.47173 * 299.99888 * 5 4 2 37 37 H 1.09000 * 110.75697 * 38.30747 * 8 6 5 38 38 H 1.09003 * 110.75336 * 274.93605 * 8 6 5 39 39 H 1.09003 * 110.48227 * 203.38412 * 9 8 6 40 40 H 1.08992 * 110.48869 * 80.73495 * 9 8 6 41 41 H 1.08999 * 110.03166 * 264.32593 * 10 9 8 42 42 H 1.09000 * 110.02766 * 142.89810 * 10 9 8 43 43 H 0.96998 * 120.00192 * 266.45164 * 13 11 10 44 44 H 1.09001 * 109.46980 * 59.99839 * 16 14 13 45 45 H 1.09001 * 109.47354 * 299.99360 * 16 14 13 46 46 H 1.09001 * 109.47002 * 60.00244 * 17 16 14 47 47 H 1.08993 * 109.46955 * 299.99807 * 17 16 14 48 48 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6354 -2.1954 1.1880 6 6 2.1449 -2.9165 2.4376 7 1 3.2114 -2.7376 2.5741 8 6 1.3540 -2.4586 3.6881 9 6 1.5391 -3.6472 4.6637 10 6 1.4737 -4.8940 3.7575 11 6 1.8590 -4.4295 2.3421 12 1 1.0350 -4.6117 1.6522 13 7 3.0581 -5.1392 1.8900 14 6 2.9437 -6.3394 1.2876 15 8 1.8482 -6.8321 1.1204 16 6 4.1773 -7.0699 0.8230 17 6 3.7718 -8.3971 0.1786 18 6 5.0053 -9.1272 -0.2866 19 1 5.9809 -8.6887 -0.1372 20 6 4.8884 -10.3555 -0.9019 21 7 3.7004 -10.8897 -1.0834 22 14 6.4174 -11.2608 -1.4779 23 1 6.0239 -12.5489 -2.1034 24 1 7.3037 -11.5247 -0.3159 25 1 7.1403 -10.4285 -2.4728 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 2.0700 -2.6549 0.3003 36 1 0.5490 -2.2724 1.1421 37 1 0.3003 -2.3162 3.4481 38 1 1.7831 -1.5470 4.1041 39 1 0.7338 -3.6669 5.3981 40 1 2.5077 -3.5865 5.1598 41 1 0.4625 -5.3010 3.7547 42 1 2.1789 -5.6476 4.1080 43 1 3.9343 -4.7454 2.0240 44 1 4.8274 -7.2642 1.6761 45 1 4.7083 -6.4586 0.0932 46 1 3.1215 -8.2031 -0.6744 47 1 3.2411 -9.0081 0.9086 48 1 2.9065 -10.4197 -0.7840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360141998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = -119.381718 kcal Electronic energy + Delta-G solvation = -22283.889281 eV Core-core repulsion = 19142.304297 eV Total energy + Delta-G solvation = -3141.584984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16092 -39.41063 -37.40483 -35.95432 -34.72168 -32.83610 -32.68018 -28.96350 -28.16453 -27.95232 -26.89756 -24.28715 -23.51920 -21.99677 -21.24165 -20.75476 -20.48673 -19.03141 -17.76087 -17.54196 -16.60699 -16.23019 -16.05098 -15.69796 -15.58936 -15.00315 -14.82670 -14.66697 -14.52117 -14.37157 -14.09745 -13.68262 -13.40044 -13.03427 -13.01262 -12.92607 -12.65831 -12.44441 -12.40358 -12.09280 -12.04801 -11.99708 -11.87033 -11.80878 -11.63842 -11.49533 -11.36861 -11.33692 -11.13464 -10.95409 -10.64295 -10.56620 -10.04463 -8.71039 -6.42929 1.53366 1.62856 1.63811 1.82170 2.23158 2.59780 3.15553 3.43963 3.62291 3.82236 3.96039 4.02125 4.03878 4.10449 4.31860 4.33414 4.37764 4.42457 4.50543 4.54697 4.58217 4.66352 4.72367 4.77178 4.83462 4.87790 4.89488 4.94716 5.00291 5.05917 5.08917 5.15376 5.16862 5.22733 5.27726 5.29077 5.29944 5.35688 5.38870 5.46429 5.53345 5.57460 5.65438 5.92289 6.15834 6.49370 6.57606 7.29355 7.43522 8.68801 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.003056 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.963954 B = 9160.894553 C =10015.112092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.145 4.145 4 C -0.105 4.105 5 C -0.111 4.111 6 C -0.085 4.085 7 H 0.095 0.905 8 C -0.109 4.109 9 C -0.115 4.115 10 C -0.138 4.138 11 C 0.138 3.862 12 H 0.057 0.943 13 N -0.710 5.710 14 C 0.510 3.490 15 O -0.591 6.591 16 C -0.114 4.114 17 C 0.028 3.972 18 C -0.620 4.620 19 H 0.067 0.933 20 C -0.047 4.047 21 N -0.940 5.940 22 Si 1.125 2.875 23 H -0.287 1.287 24 H -0.263 1.263 25 H -0.263 1.263 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.414 0.586 44 H 0.103 0.897 45 H 0.103 0.897 46 H -0.023 1.023 47 H -0.022 1.022 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 27.428 10.015 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.104 4.104 7 H 0.114 0.886 8 C -0.146 4.146 9 C -0.153 4.153 10 C -0.177 4.177 11 C 0.034 3.966 12 H 0.075 0.925 13 N -0.362 5.362 14 C 0.298 3.702 15 O -0.471 6.471 16 C -0.154 4.154 17 C -0.010 4.010 18 C -0.657 4.657 19 H 0.086 0.914 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.945 3.055 23 H -0.213 1.213 24 H -0.188 1.188 25 H -0.188 1.188 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.252 0.748 44 H 0.121 0.879 45 H 0.121 0.879 46 H -0.004 1.004 47 H -0.004 1.004 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.483 25.738 9.169 27.362 hybrid contribution -0.846 0.887 0.499 1.323 sum -2.328 26.624 9.667 28.421 Atomic orbital electron populations 1.21888 0.95340 1.01463 1.01928 1.21151 0.95971 0.96658 0.98291 1.21816 1.01019 0.95372 1.01975 1.21591 1.01036 0.93560 0.98004 1.21659 1.00858 0.95937 0.96438 1.22246 1.01633 0.90361 0.96161 0.88643 1.22527 1.00317 0.98203 0.93587 1.22326 1.02722 0.92963 0.97277 1.22571 1.00890 0.99144 0.95119 1.21774 0.87326 0.92521 0.95008 0.92467 1.46066 1.10817 1.19215 1.60146 1.21266 0.91096 0.81593 0.76232 1.90638 1.30544 1.68118 1.57846 1.21516 0.94975 0.96629 1.02242 1.18843 0.95672 0.92823 0.93634 1.22511 0.94036 1.06763 1.42402 0.91444 1.27712 1.05028 0.97120 0.94446 1.70897 0.99011 1.41359 1.46446 0.82870 0.70530 0.74919 0.77217 1.21304 1.18796 1.18798 0.93319 0.91980 0.92914 0.92573 0.92551 0.92827 0.92082 0.90638 0.91544 0.93724 0.92041 0.91148 0.88928 0.90717 0.90485 0.92901 0.92857 0.74825 0.87921 0.87927 1.00425 1.00414 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.95 71.98 0.64 -1.40 16 2 C -0.10 -1.40 2.92 -10.79 -0.03 -1.44 16 3 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 4 C -0.10 -1.33 4.56 30.59 0.14 -1.19 16 5 C -0.11 -1.87 4.32 30.60 0.13 -1.74 16 6 C -0.09 -1.39 2.55 -9.72 -0.02 -1.41 16 7 H 0.10 1.30 7.73 -2.39 -0.02 1.28 16 8 C -0.11 -1.41 5.67 31.88 0.18 -1.23 16 9 C -0.12 -1.78 6.83 31.67 0.22 -1.57 16 10 C -0.14 -3.30 6.59 31.32 0.21 -3.10 16 11 C 0.14 3.47 2.79 45.72 0.13 3.59 16 12 H 0.06 1.81 7.30 -2.39 -0.02 1.79 16 13 N -0.71 -19.66 4.99 -439.11 -2.19 -21.85 16 14 C 0.51 20.30 7.82 87.66 0.69 20.98 16 15 O -0.59 -29.73 15.66 -3.03 -0.05 -29.78 16 16 C -0.11 -4.73 5.64 29.85 0.17 -4.56 16 17 C 0.03 1.59 3.57 29.85 0.11 1.69 16 18 C -0.62 -36.37 9.11 25.60 0.23 -36.14 16 19 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 20 C -0.05 -2.81 5.46 84.65 0.46 -2.35 16 21 N -0.94 -62.32 13.65 21.45 0.29 -62.03 16 22 Si 1.13 50.95 29.90 68.60 2.05 53.00 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H 0.05 0.76 6.56 -2.39 -0.02 0.74 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.80 7.55 -2.39 -0.02 0.78 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.10 6.44 -2.38 -0.02 1.09 16 37 H 0.07 0.94 7.96 -2.39 -0.02 0.92 16 38 H 0.09 0.83 8.06 -2.39 -0.02 0.81 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.43 7.92 -2.39 -0.02 1.41 16 43 H 0.41 8.43 8.34 -92.71 -0.77 7.66 16 44 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 45 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 46 H -0.02 -1.43 7.97 -2.39 -0.02 -1.45 16 47 H -0.02 -1.43 7.96 -2.39 -0.02 -1.45 16 48 H 0.25 17.33 7.22 -92.71 -0.67 16.66 16 Total: -1.00 -77.82 376.11 4.24 -73.59 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.22 Total: 17.92 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.91 Total: -30.85 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -1.90 Total: -83.88 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.00 kcal Total: -77.82 4.24 -73.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360141998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.796 kcal (2) G-P(sol) polarization free energy of solvation -77.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds