Wall clock time and date at job start Tue Mar 31 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47160 * 2 1 4 4 C 1.52993 * 109.47538 * 120.00271 * 2 1 3 5 5 C 1.53003 * 109.47046 * 64.99887 * 4 2 1 6 6 C 1.53007 * 109.47063 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.43171 * 52.46192 * 6 5 4 8 8 C 1.54259 * 110.48714 * 289.77837 * 6 5 4 9 9 C 1.53878 * 106.59674 * 217.71185 * 8 6 5 10 10 C 1.54267 * 106.59886 * 359.97438 * 9 8 6 11 11 C 1.54891 * 110.48404 * 174.99720 * 6 5 4 12 12 H 1.09001 * 110.75447 * 38.12746 * 11 6 5 13 13 N 1.46496 * 110.75750 * 274.93670 * 11 6 5 14 14 C 1.34775 * 119.99642 * 155.00341 * 13 11 6 15 15 O 1.21279 * 120.00300 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99773 * 180.02562 * 14 13 11 17 17 C 1.53006 * 109.47126 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 H 1.08997 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46917 * 299.99706 * 1 2 3 28 28 H 1.08994 * 109.47020 * 59.99812 * 1 2 3 29 29 H 1.09005 * 109.47052 * 240.00562 * 2 1 3 30 30 H 1.08995 * 109.47034 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.46783 * 299.99991 * 3 2 1 32 32 H 1.09005 * 109.46679 * 60.00333 * 3 2 1 33 33 H 1.09009 * 109.47284 * 305.00030 * 4 2 1 34 34 H 1.08997 * 109.47922 * 184.99937 * 4 2 1 35 35 H 1.08997 * 109.46935 * 60.00683 * 5 4 2 36 36 H 1.08995 * 109.47120 * 300.00034 * 5 4 2 37 37 H 1.09003 * 110.03372 * 336.98954 * 8 6 5 38 38 H 1.08995 * 110.03480 * 98.42768 * 8 6 5 39 39 H 1.09007 * 110.03328 * 119.28263 * 9 8 6 40 40 H 1.08998 * 110.03513 * 240.66336 * 9 8 6 41 41 H 1.09000 * 110.48873 * 264.93516 * 10 9 8 42 42 H 1.09007 * 110.48302 * 142.28708 * 10 9 8 43 43 H 0.96998 * 120.00192 * 334.99865 * 13 11 6 44 44 H 1.09001 * 109.46980 * 59.99839 * 16 14 13 45 45 H 1.09001 * 109.47354 * 299.99360 * 16 14 13 46 46 H 1.09001 * 109.47002 * 60.00244 * 17 16 14 47 47 H 1.08993 * 109.46955 * 299.99807 * 17 16 14 48 48 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 6 2.1449 -2.9167 2.4373 7 1 1.8273 -2.3896 3.3370 8 6 3.6816 -3.0453 2.3975 9 6 4.0228 -4.4242 2.9891 10 6 2.6814 -5.0852 3.3682 11 6 1.6415 -4.3813 2.4610 12 1 1.6475 -4.8081 1.4580 13 7 0.3020 -4.4605 3.0488 14 6 -0.5148 -5.4836 2.7288 15 8 -0.1412 -6.3385 1.9539 16 6 -1.8930 -5.5648 3.3330 17 6 -2.6077 -6.8116 2.8076 18 6 -3.9856 -6.8931 3.4123 19 1 -4.3185 -6.1316 4.1021 20 6 -4.8216 -7.9392 3.0842 21 7 -4.4164 -8.8662 2.2440 22 14 -6.5299 -8.0399 3.8333 23 1 -7.2235 -9.2500 3.3234 24 1 -7.3060 -6.8300 3.4604 25 1 -6.4182 -8.1200 5.3119 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6055 -0.2618 2.1370 34 1 3.1264 -0.6444 1.2951 35 1 2.0700 -2.6550 0.3001 36 1 0.5491 -2.2724 1.1419 37 1 4.0350 -2.9828 1.3683 38 1 4.1378 -2.2582 2.9979 39 1 4.5417 -5.0309 2.2469 40 1 4.6453 -4.3065 3.8760 41 1 2.4529 -4.9089 4.4193 42 1 2.7098 -6.1542 3.1571 43 1 0.0030 -3.7767 3.6684 44 1 -2.4629 -4.6771 3.0587 45 1 -1.8111 -5.6230 4.4184 46 1 -2.0379 -7.6995 3.0817 47 1 -2.6897 -6.7530 1.7224 48 1 -3.5295 -8.8138 1.8547 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360142002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:07 Heat of formation + Delta-G solvation = -100.984645 kcal Electronic energy + Delta-G solvation = -22353.539263 eV Core-core repulsion = 19212.752036 eV Total energy + Delta-G solvation = -3140.787227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83672 -38.24935 -36.66218 -33.76964 -33.44829 -31.96239 -30.82399 -27.81763 -27.47757 -27.20496 -24.97303 -23.12749 -21.94188 -20.68964 -20.38849 -19.97929 -19.35336 -16.97090 -16.49542 -16.05852 -15.54000 -15.23164 -14.86888 -14.42849 -14.19881 -14.07343 -13.67467 -13.37365 -13.27948 -13.09498 -12.58387 -12.47588 -12.35744 -12.12178 -12.02255 -11.63488 -11.59177 -11.43487 -11.30440 -11.17846 -10.89742 -10.80834 -10.75381 -10.58857 -10.45689 -10.43556 -10.12154 -10.08211 -9.89879 -9.21910 -8.73234 -8.50515 -8.26357 -6.29774 -3.99691 3.20449 3.45853 3.48918 3.53952 3.67772 4.27536 4.44660 4.55618 4.59705 4.69614 4.73125 4.74817 5.04080 5.19621 5.26112 5.32595 5.33505 5.36916 5.43545 5.45199 5.47903 5.50817 5.56290 5.60249 5.62263 5.65109 5.74344 5.79164 5.86546 5.90876 5.94112 5.99462 6.09248 6.13138 6.14367 6.16334 6.20542 6.25205 6.27908 6.78108 6.80487 7.54965 7.60437 7.88385 8.22564 8.52080 8.75072 8.94866 9.73992 11.11217 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.003313 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.562447 B = 8448.953447 C = 9704.232602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.097 4.097 7 H 0.077 0.923 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.137 4.137 11 C 0.144 3.856 12 H 0.094 0.906 13 N -0.735 5.735 14 C 0.510 3.490 15 O -0.538 6.538 16 C -0.124 4.124 17 C 0.025 3.975 18 C -0.608 4.608 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.070 2.930 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.396 0.604 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.014 0.986 47 H 0.014 0.986 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.995 19.641 0.047 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.116 4.116 7 H 0.096 0.904 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.176 4.176 11 C 0.038 3.962 12 H 0.112 0.888 13 N -0.387 5.387 14 C 0.298 3.702 15 O -0.414 6.414 16 C -0.164 4.164 17 C -0.013 4.013 18 C -0.647 4.647 19 H 0.067 0.933 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.898 3.102 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.230 0.770 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.032 0.968 47 H 0.032 0.968 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.866 18.088 -0.504 24.066 hybrid contribution 1.341 1.338 0.356 1.927 sum 17.207 19.426 -0.148 25.951 Atomic orbital electron populations 1.21901 0.95155 1.02201 1.01538 1.21136 0.96067 0.95955 0.98563 1.21843 1.00720 0.96237 1.01632 1.21654 1.00646 0.95052 0.97618 1.21708 1.01571 0.94740 0.97167 1.22259 0.95469 0.95042 0.98852 0.90421 1.22145 0.94834 0.97142 1.01221 1.22076 0.97279 0.96119 1.00624 1.22754 0.94427 1.00491 0.99912 1.21934 0.81758 0.94583 0.97894 0.88834 1.46150 1.15250 1.28185 1.49107 1.21525 0.87562 0.80190 0.80877 1.90649 1.76477 1.39080 1.35192 1.21720 0.90484 1.03323 1.00838 1.19002 0.94800 0.91092 0.96364 1.22041 1.00099 1.12281 1.30255 0.93312 1.25848 1.04578 0.92680 0.95866 1.70732 1.21678 1.34360 1.27929 0.83541 0.74885 0.76130 0.75627 1.20770 1.21474 1.21492 0.92167 0.92758 0.92979 0.91377 0.92895 0.92878 0.92790 0.92097 0.92040 0.91849 0.91326 0.91504 0.91764 0.91757 0.91870 0.91422 0.91221 0.77009 0.90189 0.90189 0.96789 0.96781 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.95 37.16 0.33 -0.94 16 2 C -0.10 -0.77 2.92 -90.62 -0.26 -1.03 16 3 C -0.15 -1.01 9.19 37.16 0.34 -0.66 16 4 C -0.11 -0.86 4.56 -26.73 -0.12 -0.99 16 5 C -0.11 -1.05 4.36 -26.73 -0.12 -1.17 16 6 C -0.10 -0.90 2.48 -88.96 -0.22 -1.12 16 7 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 8 C -0.12 -0.95 5.69 -25.62 -0.15 -1.09 16 9 C -0.12 -1.13 6.80 -25.61 -0.17 -1.30 16 10 C -0.14 -1.61 6.51 -25.06 -0.16 -1.78 16 11 C 0.14 1.81 2.69 -65.92 -0.18 1.63 16 12 H 0.09 1.41 7.46 -51.93 -0.39 1.03 16 13 N -0.73 -10.34 5.18 -51.87 -0.27 -10.60 16 14 C 0.51 9.89 7.83 -10.98 -0.09 9.80 16 15 O -0.54 -12.73 15.63 5.56 0.09 -12.64 16 16 C -0.12 -2.57 5.64 -27.88 -0.16 -2.73 16 17 C 0.02 0.68 3.57 -27.88 -0.10 0.58 16 18 C -0.61 -17.74 9.11 -34.44 -0.31 -18.05 16 19 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 20 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 21 N -0.91 -29.15 13.65 55.43 0.76 -28.39 16 22 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.06 0.44 7.62 -51.93 -0.40 0.05 16 35 H 0.06 0.61 7.95 -51.93 -0.41 0.20 16 36 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 37 H 0.07 0.53 7.71 -51.93 -0.40 0.13 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.40 4.45 8.57 -40.82 -0.35 4.10 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 46 H 0.01 0.41 7.97 -51.93 -0.41 -0.01 16 47 H 0.01 0.41 7.96 -51.93 -0.41 0.00 16 48 H 0.27 8.84 7.22 -40.82 -0.29 8.55 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -33.76 376.80 -9.58 -43.34 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -9.29 Total: 0.51 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.46 Total: -18.52 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.49 Total: -39.00 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.76 -9.58 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360142002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.643 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds