Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.52997 * 109.47459 * 119.99943 * 2 1 3 5 5 C 1.52998 * 109.47419 * 174.99907 * 4 2 1 6 6 C 1.52999 * 109.47050 * 180.02562 * 5 4 2 7 7 H 1.09002 * 110.05763 * 306.41993 * 6 5 4 8 8 C 1.54266 * 110.03279 * 67.83452 * 6 5 4 9 9 C 1.54893 * 104.19500 * 142.89573 * 8 6 5 10 10 C 1.54887 * 102.74533 * 322.05712 * 9 8 6 11 11 C 1.53872 * 110.03132 * 185.00316 * 6 5 4 12 12 H 1.09003 * 110.03622 * 121.42915 * 11 6 5 13 13 N 1.46498 * 110.03563 * 359.97438 * 11 6 5 14 14 C 1.34777 * 120.00421 * 156.37932 * 13 11 6 15 15 O 1.21281 * 119.99861 * 0.02562 * 14 13 11 16 16 C 1.50692 * 120.00138 * 180.02562 * 14 13 11 17 17 C 1.53002 * 109.47467 * 180.02562 * 16 14 13 18 18 C 1.50692 * 109.47467 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00470 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00146 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00223 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99723 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.46904 * 89.99855 * 22 20 18 24 24 H 1.48506 * 109.46858 * 209.99902 * 22 20 18 25 25 H 1.48497 * 109.47185 * 329.99492 * 22 20 18 26 26 H 1.09004 * 109.47185 * 300.00199 * 1 2 3 27 27 H 1.09004 * 109.47380 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47139 * 240.00264 * 2 1 3 30 30 H 1.09000 * 109.47365 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46915 * 300.00232 * 3 2 1 32 32 H 1.09004 * 109.47218 * 59.99821 * 3 2 1 33 33 H 1.09004 * 109.46945 * 54.99733 * 4 2 1 34 34 H 1.08997 * 109.47065 * 295.00231 * 4 2 1 35 35 H 1.08998 * 109.46826 * 60.00182 * 5 4 2 36 36 H 1.08997 * 109.47267 * 300.00201 * 5 4 2 37 37 H 1.09002 * 110.48438 * 261.57191 * 8 6 5 38 38 H 1.08998 * 110.48431 * 24.08020 * 8 6 5 39 39 H 1.09001 * 110.75228 * 203.74448 * 9 8 6 40 40 H 1.09000 * 110.75571 * 80.37081 * 9 8 6 41 41 H 1.09001 * 110.48816 * 279.26329 * 10 9 8 42 42 H 1.09004 * 110.48531 * 156.62545 * 10 9 8 43 43 H 0.97006 * 119.99781 * 336.38308 * 13 11 6 44 44 H 1.09000 * 109.47209 * 300.00234 * 16 14 13 45 45 H 1.09008 * 109.47396 * 60.00191 * 16 14 13 46 46 H 1.09000 * 109.47061 * 300.00280 * 17 16 14 47 47 H 1.08999 * 109.46902 * 59.99621 * 17 16 14 48 48 H 0.96999 * 119.99723 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 6 4.0748 -1.5528 2.4368 7 1 3.6961 -1.0617 3.3333 8 6 3.6270 -3.0289 2.4140 9 6 4.8283 -3.7996 3.0159 10 6 6.0470 -3.0407 2.4346 11 6 5.6134 -1.5603 2.4500 12 1 5.9816 -1.0728 3.3527 13 7 6.1288 -0.8746 1.2624 14 6 7.3669 -0.3423 1.2757 15 8 8.0546 -0.4313 2.2707 16 6 7.8968 0.3635 0.0542 17 6 9.3136 0.8697 0.3321 18 6 9.8438 1.5750 -0.8896 19 1 9.2313 1.6547 -1.7755 20 6 11.1104 2.1195 -0.8760 21 7 11.5729 2.7355 -1.9420 22 14 12.1696 1.9824 0.6566 23 1 12.9752 0.7366 0.5916 24 1 13.0771 3.1551 0.7377 25 1 11.2986 1.9465 1.8587 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9994 0.1675 1.1420 36 1 3.8532 -1.3939 0.3002 37 1 2.7380 -3.1674 3.0292 38 1 3.4364 -3.3539 1.3912 39 1 4.8259 -4.8380 2.6847 40 1 4.8193 -3.7400 4.1042 41 1 6.2495 -3.3684 1.4149 42 1 6.9241 -3.1880 3.0648 43 1 5.5789 -0.8037 0.4664 44 1 7.9175 -0.3305 -0.7860 45 1 7.2500 1.2071 -0.1872 46 1 9.2933 1.5636 1.1724 47 1 9.9601 0.0259 0.5732 48 1 12.4638 3.1188 -1.9323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360142004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -83.645725 kcal Electronic energy + Delta-G solvation = -22649.840015 eV Core-core repulsion = 19509.804660 eV Total energy + Delta-G solvation = -3140.035355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09809 -38.22486 -36.62559 -33.45628 -33.42767 -31.94241 -31.23316 -27.96857 -27.51194 -27.20363 -25.64793 -23.41082 -21.62970 -20.84926 -20.30905 -19.57213 -19.11786 -17.25860 -16.21499 -16.05131 -15.61339 -15.25948 -14.98746 -14.48585 -14.26782 -14.17384 -14.05194 -13.30738 -13.23552 -12.97137 -12.64123 -12.55291 -12.46104 -12.18216 -11.89159 -11.66488 -11.46120 -11.37436 -11.26473 -11.16783 -10.95119 -10.87422 -10.80942 -10.76947 -10.48774 -10.37583 -10.11993 -10.00911 -9.75763 -9.18702 -9.11305 -8.75378 -8.48497 -6.01103 -3.99545 3.19129 3.39544 3.45859 3.55448 3.57401 4.30133 4.43283 4.45246 4.52912 4.67041 4.72533 4.81609 5.03784 5.18316 5.21961 5.30293 5.34506 5.36790 5.38323 5.44978 5.48273 5.53409 5.55364 5.59663 5.59848 5.64266 5.74721 5.76277 5.82436 5.88970 5.93861 5.98126 6.09077 6.11419 6.13800 6.15236 6.19545 6.21597 6.25668 6.73133 6.80859 7.39945 7.46952 7.80341 7.87874 8.52945 8.74130 9.02307 9.62200 11.11762 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003798 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.865171 B = 7369.645321 C = 8746.998036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.098 4.098 7 H 0.078 0.922 8 C -0.117 4.117 9 C -0.125 4.125 10 C -0.135 4.135 11 C 0.144 3.856 12 H 0.086 0.914 13 N -0.737 5.737 14 C 0.508 3.492 15 O -0.542 6.542 16 C -0.123 4.123 17 C 0.002 3.998 18 C -0.524 4.524 19 H 0.072 0.928 20 C 0.068 3.932 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.399 0.601 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.023 0.977 47 H 0.018 0.982 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.446 -10.624 6.996 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.117 4.117 7 H 0.097 0.903 8 C -0.154 4.154 9 C -0.163 4.163 10 C -0.174 4.174 11 C 0.039 3.961 12 H 0.104 0.896 13 N -0.393 5.393 14 C 0.296 3.704 15 O -0.418 6.418 16 C -0.163 4.163 17 C -0.036 4.036 18 C -0.562 4.562 19 H 0.090 0.910 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.236 0.764 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.777 -10.566 7.645 26.247 hybrid contribution 0.387 0.010 0.296 0.487 sum -22.390 -10.556 7.941 25.997 Atomic orbital electron populations 1.21842 0.95517 1.01452 1.01647 1.21141 0.95454 0.96633 0.98506 1.21913 1.01621 0.95745 1.01590 1.21649 0.95212 1.00333 0.97732 1.21766 0.95668 1.01127 0.97335 1.22042 0.94137 0.96399 0.99096 0.90331 1.22439 0.97767 0.94121 1.01123 1.22466 0.94709 0.98851 1.00224 1.22798 0.98095 0.94760 1.01703 1.21522 0.92368 0.92453 0.89802 0.89567 1.46535 1.17251 1.58969 1.16528 1.21532 0.80499 0.77597 0.90725 1.90639 1.57334 1.58640 1.35181 1.21663 1.00810 0.99751 0.94078 1.19353 0.90158 0.96482 0.97575 1.21125 1.00645 1.35373 0.99054 0.90972 1.24976 0.97723 0.94541 0.96030 1.69916 1.18000 1.37714 1.28691 0.86794 0.80537 0.77562 0.84654 1.20265 1.21469 1.18527 0.92851 0.92815 0.92908 0.91225 0.92073 0.92849 0.92855 0.91970 0.92064 0.90758 0.91654 0.91726 0.91375 0.91566 0.91483 0.91196 0.91232 0.76375 0.89790 0.89762 0.95870 0.96329 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.63 16 2 C -0.10 -0.72 2.92 -90.62 -0.26 -0.99 16 3 C -0.15 -1.22 8.95 37.16 0.33 -0.88 16 4 C -0.11 -0.80 4.54 -26.73 -0.12 -0.92 16 5 C -0.12 -0.99 2.96 -26.73 -0.08 -1.07 16 6 C -0.10 -0.87 2.93 -89.50 -0.26 -1.13 16 7 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.12 -0.90 5.53 -25.07 -0.14 -1.04 16 9 C -0.12 -1.08 6.91 -24.74 -0.17 -1.25 16 10 C -0.13 -1.54 6.52 -25.07 -0.16 -1.71 16 11 C 0.14 1.74 3.20 -66.81 -0.21 1.52 16 12 H 0.09 1.23 7.61 -51.93 -0.40 0.83 16 13 N -0.74 -9.94 4.42 -52.73 -0.23 -10.17 16 14 C 0.51 9.36 7.82 -10.99 -0.09 9.27 16 15 O -0.54 -12.14 15.66 5.56 0.09 -12.05 16 16 C -0.12 -2.42 5.64 -27.89 -0.16 -2.58 16 17 C 0.00 0.06 3.33 -27.89 -0.09 -0.04 16 18 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 19 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 22 Si 0.88 22.86 27.47 -169.99 -4.67 18.19 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.69 5.83 -51.93 -0.30 0.38 16 36 H 0.06 0.52 7.12 -51.93 -0.37 0.15 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.51 7.76 -51.93 -0.40 0.11 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.40 4.40 5.84 -40.82 -0.24 4.17 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 46 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 47 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 48 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -33.10 369.08 -9.11 -42.21 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -9.12 Total: -1.28 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.51 Total: -14.97 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.54 Total: -37.65 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.67 Total: 18.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.10 -9.11 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360142004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.436 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds