Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.52997 * 109.47459 * 119.99943 * 2 1 3 5 5 C 1.52998 * 109.47419 * 174.99907 * 4 2 1 6 6 C 1.52999 * 109.47050 * 180.02562 * 5 4 2 7 7 H 1.09002 * 110.05763 * 306.41993 * 6 5 4 8 8 C 1.54266 * 110.03279 * 67.83452 * 6 5 4 9 9 C 1.54893 * 104.19500 * 142.89573 * 8 6 5 10 10 C 1.54887 * 102.74533 * 322.05712 * 9 8 6 11 11 C 1.53872 * 110.03132 * 185.00316 * 6 5 4 12 12 H 1.09003 * 110.03622 * 121.42915 * 11 6 5 13 13 N 1.46498 * 110.03563 * 359.97438 * 11 6 5 14 14 C 1.34777 * 120.00421 * 156.37932 * 13 11 6 15 15 O 1.21281 * 119.99861 * 0.02562 * 14 13 11 16 16 C 1.50692 * 120.00138 * 180.02562 * 14 13 11 17 17 C 1.53002 * 109.47467 * 180.02562 * 16 14 13 18 18 C 1.50692 * 109.47467 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00470 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00146 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00223 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99723 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.46904 * 89.99855 * 22 20 18 24 24 H 1.48506 * 109.46858 * 209.99902 * 22 20 18 25 25 H 1.48497 * 109.47185 * 329.99492 * 22 20 18 26 26 H 1.09004 * 109.47185 * 300.00199 * 1 2 3 27 27 H 1.09004 * 109.47380 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47139 * 240.00264 * 2 1 3 30 30 H 1.09000 * 109.47365 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46915 * 300.00232 * 3 2 1 32 32 H 1.09004 * 109.47218 * 59.99821 * 3 2 1 33 33 H 1.09004 * 109.46945 * 54.99733 * 4 2 1 34 34 H 1.08997 * 109.47065 * 295.00231 * 4 2 1 35 35 H 1.08998 * 109.46826 * 60.00182 * 5 4 2 36 36 H 1.08997 * 109.47267 * 300.00201 * 5 4 2 37 37 H 1.09002 * 110.48438 * 261.57191 * 8 6 5 38 38 H 1.08998 * 110.48431 * 24.08020 * 8 6 5 39 39 H 1.09001 * 110.75228 * 203.74448 * 9 8 6 40 40 H 1.09000 * 110.75571 * 80.37081 * 9 8 6 41 41 H 1.09001 * 110.48816 * 279.26329 * 10 9 8 42 42 H 1.09004 * 110.48531 * 156.62545 * 10 9 8 43 43 H 0.97006 * 119.99781 * 336.38308 * 13 11 6 44 44 H 1.09000 * 109.47209 * 300.00234 * 16 14 13 45 45 H 1.09008 * 109.47396 * 60.00191 * 16 14 13 46 46 H 1.09000 * 109.47061 * 300.00280 * 17 16 14 47 47 H 1.08999 * 109.46902 * 59.99621 * 17 16 14 48 48 H 0.96999 * 119.99723 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 6 4.0748 -1.5528 2.4368 7 1 3.6961 -1.0617 3.3333 8 6 3.6270 -3.0289 2.4140 9 6 4.8283 -3.7996 3.0159 10 6 6.0470 -3.0407 2.4346 11 6 5.6134 -1.5603 2.4500 12 1 5.9816 -1.0728 3.3527 13 7 6.1288 -0.8746 1.2624 14 6 7.3669 -0.3423 1.2757 15 8 8.0546 -0.4313 2.2707 16 6 7.8968 0.3635 0.0542 17 6 9.3136 0.8697 0.3321 18 6 9.8438 1.5750 -0.8896 19 1 9.2313 1.6547 -1.7755 20 6 11.1104 2.1195 -0.8760 21 7 11.5729 2.7355 -1.9420 22 14 12.1696 1.9824 0.6566 23 1 12.9752 0.7366 0.5916 24 1 13.0771 3.1551 0.7377 25 1 11.2986 1.9465 1.8587 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9994 0.1675 1.1420 36 1 3.8532 -1.3939 0.3002 37 1 2.7380 -3.1674 3.0292 38 1 3.4364 -3.3539 1.3912 39 1 4.8259 -4.8380 2.6847 40 1 4.8193 -3.7400 4.1042 41 1 6.2495 -3.3684 1.4149 42 1 6.9241 -3.1880 3.0648 43 1 5.5789 -0.8037 0.4664 44 1 7.9175 -0.3305 -0.7860 45 1 7.2500 1.2071 -0.1872 46 1 9.2933 1.5636 1.1724 47 1 9.9601 0.0259 0.5732 48 1 12.4638 3.1188 -1.9323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360142004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -102.392853 kcal Electronic energy + Delta-G solvation = -22650.652952 eV Core-core repulsion = 19509.804660 eV Total energy + Delta-G solvation = -3140.848291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23348 -39.38492 -37.29370 -35.54913 -34.64957 -33.25590 -32.64346 -29.22362 -28.14070 -27.85965 -27.32082 -24.10460 -23.39607 -21.71332 -21.32258 -20.65331 -20.06005 -19.22041 -17.75298 -17.10021 -16.52746 -16.40249 -16.19411 -16.02032 -15.38424 -15.13771 -14.96440 -14.73009 -14.52925 -14.26139 -13.87032 -13.66397 -13.41946 -13.09164 -13.00575 -12.87354 -12.80355 -12.29962 -12.21629 -12.04940 -11.98291 -11.95488 -11.88354 -11.77757 -11.61523 -11.48596 -11.41340 -11.37945 -11.11947 -11.07240 -10.78928 -10.71602 -9.97409 -8.32370 -6.35098 1.32099 1.33880 1.49320 1.71326 2.31569 2.34198 3.03221 3.51870 3.69212 3.76070 4.03316 4.08312 4.12853 4.16140 4.35522 4.38895 4.46728 4.48533 4.51032 4.57602 4.59227 4.76377 4.79921 4.82710 4.88016 4.93561 4.95875 4.98607 5.03860 5.07305 5.15039 5.19354 5.22294 5.27093 5.32606 5.33012 5.35872 5.43372 5.44058 5.50438 5.58189 5.60112 5.61551 5.68764 6.22908 6.62156 6.71132 7.30250 7.35267 8.83304 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003798 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.865171 B = 7369.645321 C = 8746.998036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.153 4.153 4 C -0.105 4.105 5 C -0.120 4.120 6 C -0.089 4.089 7 H 0.083 0.917 8 C -0.109 4.109 9 C -0.118 4.118 10 C -0.136 4.136 11 C 0.138 3.862 12 H 0.061 0.939 13 N -0.714 5.714 14 C 0.511 3.489 15 O -0.587 6.587 16 C -0.118 4.118 17 C 0.007 3.993 18 C -0.529 4.529 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.943 5.943 22 Si 0.938 3.062 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.263 1.263 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.414 0.586 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.009 0.991 47 H 0.007 0.993 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.451 -11.977 7.651 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.211 4.211 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.108 4.108 7 H 0.101 0.899 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.175 4.175 11 C 0.033 3.967 12 H 0.079 0.921 13 N -0.368 5.368 14 C 0.300 3.700 15 O -0.467 6.467 16 C -0.158 4.158 17 C -0.031 4.031 18 C -0.567 4.567 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.583 5.583 22 Si 0.763 3.237 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.187 1.187 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.254 0.746 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.027 0.973 47 H 0.025 0.975 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.838 -11.936 8.278 28.774 hybrid contribution 0.954 0.441 0.036 1.051 sum -23.884 -11.496 8.314 27.780 Atomic orbital electron populations 1.21827 0.94882 1.01963 1.01668 1.21136 0.95976 0.95936 0.98623 1.21930 1.01064 0.96541 1.01523 1.21584 0.94143 1.00950 0.97547 1.21744 0.96567 1.00368 0.97123 1.21997 0.91203 0.97833 0.99749 0.89866 1.22426 0.97837 0.92444 1.01967 1.22449 0.93458 0.99252 1.00427 1.22768 0.98746 0.94666 1.01320 1.21702 0.94754 0.92364 0.87881 0.92063 1.46322 1.15558 1.57253 1.17707 1.21208 0.81640 0.77690 0.89497 1.90625 1.58931 1.60700 1.36480 1.21500 0.97966 1.00934 0.95371 1.19199 0.93296 0.95382 0.95266 1.21429 1.00501 1.35196 0.99554 0.93137 1.25797 0.99260 0.94429 0.98883 1.70022 1.18766 1.38919 1.30638 0.85835 0.78939 0.78175 0.80796 1.19375 1.20234 1.18739 0.92823 0.92870 0.92139 0.91203 0.92927 0.92928 0.92966 0.90762 0.92166 0.92008 0.91042 0.89840 0.90528 0.90306 0.91103 0.91477 0.93470 0.74627 0.88143 0.88134 0.97309 0.97455 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.10 -1.22 2.92 -10.80 -0.03 -1.26 16 3 C -0.15 -2.27 8.95 71.98 0.64 -1.63 16 4 C -0.10 -1.21 4.54 30.59 0.14 -1.07 16 5 C -0.12 -1.67 2.96 30.59 0.09 -1.58 16 6 C -0.09 -1.37 2.93 -10.07 -0.03 -1.40 16 7 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 8 C -0.11 -1.30 5.53 31.67 0.18 -1.13 16 9 C -0.12 -1.75 6.91 31.89 0.22 -1.53 16 10 C -0.14 -2.99 6.52 31.67 0.21 -2.78 16 11 C 0.14 3.20 3.20 45.72 0.15 3.34 16 12 H 0.06 1.76 7.61 -2.39 -0.02 1.74 16 13 N -0.71 -18.49 4.42 -439.12 -1.94 -20.43 16 14 C 0.51 18.67 7.82 87.65 0.69 19.36 16 15 O -0.59 -26.66 15.66 -3.03 -0.05 -26.71 16 16 C -0.12 -4.57 5.64 29.85 0.17 -4.41 16 17 C 0.01 0.33 3.33 29.85 0.10 0.43 16 18 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 19 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 20 C 0.01 0.84 5.47 84.66 0.46 1.31 16 21 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 22 Si 0.94 47.49 27.47 68.60 1.88 49.38 16 23 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 25 H -0.26 -13.31 6.54 99.48 0.65 -12.66 16 26 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.86 6.56 -2.39 -0.02 0.84 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.72 7.51 -2.39 -0.02 0.70 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 1.03 5.83 -2.39 -0.01 1.02 16 36 H 0.07 0.92 7.12 -2.39 -0.02 0.90 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.83 7.76 -2.39 -0.02 0.82 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 42 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.41 8.36 5.84 -92.70 -0.54 7.82 16 44 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 45 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 46 H 0.01 0.46 7.16 -2.39 -0.02 0.44 16 47 H 0.01 0.37 7.53 -2.39 -0.02 0.36 16 48 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -72.00 369.08 4.38 -67.62 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.30 Total: 13.39 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 3.89 Total: -24.00 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.64 Total: -79.67 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.88 Total: 49.38 kcal Total: -72.00 4.38 -67.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360142004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.775 kcal (2) G-P(sol) polarization free energy of solvation -71.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds