Wall clock time and date at job start Tue Mar 31 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47375 * 2 1 4 4 C 1.52998 * 109.47002 * 239.99961 * 2 1 3 5 5 C 1.53004 * 109.46905 * 120.00457 * 2 1 3 6 6 H 1.09005 * 108.44756 * 182.08706 * 5 2 1 7 7 C 1.52569 * 108.51000 * 299.62458 * 5 2 1 8 8 C 1.50878 * 109.35956 * 206.26751 * 7 5 2 9 9 C 1.53945 * 110.09623 * 268.11647 * 8 7 5 10 10 N 1.47601 * 112.14236 * 40.56900 * 9 8 7 11 11 C 1.34779 * 118.64295 * 222.11080 * 10 9 8 12 12 O 1.21279 * 119.99911 * 180.02562 * 11 10 9 13 13 C 1.50702 * 120.00033 * 0.02562 * 11 10 9 14 14 C 1.53002 * 109.47071 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46533 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00759 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99349 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00340 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99764 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47521 * 89.99455 * 19 17 15 21 21 H 1.48503 * 109.46828 * 209.99618 * 19 17 15 22 22 H 1.48503 * 109.46844 * 329.99016 * 19 17 15 23 23 C 1.44580 * 122.71550 * 42.12715 * 10 9 8 24 24 C 1.47086 * 108.51642 * 64.39697 * 5 2 1 25 25 H 1.09003 * 109.46894 * 300.00236 * 1 2 3 26 26 H 1.08999 * 109.47530 * 59.99710 * 1 2 3 27 27 H 1.09007 * 109.47503 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47190 * 172.70594 * 3 2 1 29 29 H 1.09004 * 109.47296 * 292.70585 * 3 2 1 30 30 H 1.09007 * 109.47200 * 52.70301 * 3 2 1 31 31 H 1.09004 * 109.47072 * 300.00555 * 4 2 1 32 32 H 1.08998 * 109.47212 * 59.99674 * 4 2 1 33 33 H 1.08996 * 109.47552 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.49379 * 326.24014 * 7 5 2 35 35 H 1.09008 * 109.48676 * 86.30785 * 7 5 2 36 36 H 1.09004 * 109.36806 * 147.92639 * 8 7 5 37 37 H 1.08996 * 109.36530 * 28.31174 * 8 7 5 38 38 H 1.08999 * 108.95361 * 279.87768 * 9 8 7 39 39 H 1.09007 * 108.94665 * 161.24606 * 9 8 7 40 40 H 1.08997 * 109.47016 * 300.00857 * 13 11 10 41 41 H 1.09006 * 109.46773 * 60.00522 * 13 11 10 42 42 H 1.09000 * 109.47027 * 300.00364 * 14 13 11 43 43 H 1.08993 * 109.47051 * 60.00308 * 14 13 11 44 44 H 0.97002 * 119.99999 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.44838 * 149.23884 * 23 10 9 46 46 H 1.08998 * 109.42848 * 29.30041 * 23 10 9 47 47 H 1.09005 * 109.32944 * 296.20126 * 24 5 2 48 48 H 1.08995 * 109.32895 * 55.67911 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7214 1.2492 6 1 3.1292 -0.6792 1.2514 7 6 1.5271 0.0202 2.4800 8 6 2.4676 -0.2182 3.6355 9 6 2.0048 -1.4390 4.4511 10 7 1.5297 -2.5375 3.5873 11 6 0.4168 -3.2072 3.9470 12 8 0.0048 -4.1144 3.2556 13 6 -0.3158 -2.8286 5.2085 14 6 -1.5340 -3.7378 5.3832 15 6 -2.2668 -3.3587 6.6443 16 1 -1.9002 -2.5506 7.2598 17 6 -3.4048 -4.0444 7.0128 18 7 -3.8510 -5.0288 6.2635 19 14 -4.3137 -3.5742 8.5756 20 1 -5.3358 -2.5434 8.2628 21 1 -4.9788 -4.7751 9.1417 22 1 -3.3487 -3.0303 9.5647 23 6 2.2091 -2.9251 2.3713 24 6 1.6274 -2.1313 1.1756 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1222 1.4451 0.1305 29 1 1.7872 1.9172 -0.9480 30 1 1.5740 1.9926 0.8176 31 1 1.6765 -1.7489 -1.2493 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7217 -1.2491 34 1 1.4764 1.0878 2.2665 35 1 0.5337 -0.3470 2.7381 36 1 2.4808 0.6621 4.2783 37 1 3.4720 -0.3989 3.2526 38 1 1.1952 -1.1352 5.1147 39 1 2.8386 -1.7985 5.0543 40 1 0.3497 -2.9448 6.0638 41 1 -0.6431 -1.7910 5.1411 42 1 -2.1995 -3.6219 4.5277 43 1 -1.2064 -4.7751 5.4507 44 1 -4.6518 -5.5110 6.5226 45 1 2.0682 -3.9925 2.2013 46 1 3.2734 -2.7100 2.4663 47 1 0.5392 -2.1905 1.1985 48 1 1.9901 -2.5651 0.2438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360265386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:21 Heat of formation + Delta-G solvation = -66.369598 kcal Electronic energy + Delta-G solvation = -23611.476319 eV Core-core repulsion = 20472.190114 eV Total energy + Delta-G solvation = -3139.286206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.48823 -38.70896 -35.92185 -33.54880 -32.69392 -32.21427 -30.69519 -27.97201 -27.42936 -26.78533 -25.43354 -24.74901 -22.31639 -20.99664 -20.76813 -18.63543 -18.03638 -16.94804 -16.07934 -15.94813 -15.57352 -14.95596 -14.56530 -14.43316 -14.18449 -13.91051 -13.84321 -13.47005 -13.22171 -12.71825 -12.55637 -12.25498 -12.15131 -12.01394 -11.88682 -11.78360 -11.57870 -11.38024 -11.23587 -11.05055 -10.95989 -10.91605 -10.81070 -10.55920 -10.31094 -10.17788 -10.06265 -9.91230 -9.55813 -9.11973 -8.91055 -8.32172 -8.24757 -5.93625 -3.97866 3.28888 3.34584 3.39779 3.42013 3.44942 4.46269 4.49042 4.55539 4.64190 4.80146 5.01594 5.04286 5.14478 5.20667 5.27636 5.41197 5.41398 5.49154 5.53397 5.55814 5.59713 5.64045 5.65942 5.74681 5.77899 5.81608 5.87530 5.90564 5.99356 6.00903 6.05117 6.12826 6.22797 6.24364 6.26064 6.29502 6.29750 6.41961 6.53798 6.90864 7.05319 7.77127 7.80533 7.90177 8.10415 8.41921 8.84219 9.10938 9.65484 11.17334 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.003737 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.211299 B = 7491.639675 C = 7517.429427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.069 4.069 6 H 0.061 0.939 7 C -0.117 4.117 8 C -0.130 4.130 9 C 0.108 3.892 10 N -0.617 5.617 11 C 0.507 3.493 12 O -0.533 6.533 13 C -0.130 4.130 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.119 3.881 24 C -0.136 4.136 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.022 0.978 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.853 13.023 -11.297 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.087 4.087 6 H 0.080 0.920 7 C -0.154 4.154 8 C -0.168 4.168 9 C -0.015 4.015 10 N -0.352 5.352 11 C 0.297 3.703 12 O -0.409 6.409 13 C -0.169 4.169 14 C 0.000 4.000 15 C -0.564 4.564 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.005 4.005 24 C -0.175 4.175 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.506 12.390 -11.684 23.032 hybrid contribution -0.469 0.309 0.838 1.009 sum 15.036 12.699 -10.846 22.472 Atomic orbital electron populations 1.21954 0.94527 1.02271 1.01477 1.20660 0.95877 0.95187 0.95116 1.21947 1.00698 0.95784 1.01434 1.21978 1.00660 1.00702 0.96859 1.20091 0.99738 0.94907 0.93980 0.92035 1.21261 0.99927 1.00164 0.94035 1.21751 0.99513 0.97594 0.97941 1.21951 1.00297 0.86806 0.92475 1.47863 1.28089 1.34768 1.24486 1.21574 0.79520 0.81307 0.87941 1.90652 1.65458 1.30040 1.54735 1.21888 0.99787 1.02415 0.92849 1.18893 0.90031 0.94262 0.96819 1.21227 1.09947 1.17312 1.07962 0.92672 1.25022 0.97354 0.95040 0.96933 1.69999 1.23255 1.21591 1.37997 0.86609 0.79965 0.77927 0.83553 1.20690 1.21238 1.19889 1.21278 0.95349 0.99781 0.84047 1.21424 1.02578 0.95032 0.98448 0.92400 0.93190 0.92205 0.92912 0.93071 0.92291 0.92048 0.93029 0.92920 0.91380 0.91297 0.90885 0.91898 0.89413 0.92326 0.90471 0.90425 0.95929 0.95904 0.92985 0.90267 0.91686 0.91027 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.91 37.16 0.29 -1.21 16 2 C -0.07 -0.63 0.56 -154.51 -0.09 -0.71 16 3 C -0.14 -1.14 8.00 37.15 0.30 -0.84 16 4 C -0.14 -1.24 7.95 37.16 0.30 -0.95 16 5 C -0.07 -0.68 1.06 -93.68 -0.10 -0.78 16 6 H 0.06 0.57 7.35 -51.93 -0.38 0.19 16 7 C -0.12 -1.18 3.66 -28.02 -0.10 -1.29 16 8 C -0.13 -1.19 5.71 -27.30 -0.16 -1.35 16 9 C 0.11 1.24 5.95 -2.95 -0.02 1.22 16 10 N -0.62 -9.15 2.24 -172.54 -0.39 -9.53 16 11 C 0.51 10.03 7.62 -10.98 -0.08 9.95 16 12 O -0.53 -12.78 15.42 5.56 0.09 -12.69 16 13 C -0.13 -2.69 3.96 -27.88 -0.11 -2.80 16 14 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 15 C -0.53 -15.06 9.11 -34.44 -0.31 -15.38 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.12 1.57 5.38 -4.08 -0.02 1.55 16 24 C -0.14 -1.62 4.36 -28.59 -0.12 -1.75 16 25 H 0.06 0.62 7.00 -51.93 -0.36 0.26 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.70 6.54 -51.92 -0.34 0.37 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 6.25 -51.93 -0.32 0.15 16 31 H 0.06 0.56 6.20 -51.93 -0.32 0.24 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.62 5.54 -51.93 -0.29 0.33 16 35 H 0.07 0.88 7.21 -51.92 -0.37 0.50 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.53 7.31 -51.93 -0.38 0.15 16 38 H 0.09 1.05 5.82 -51.93 -0.30 0.75 16 39 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.08 1.48 8.02 -51.93 -0.42 1.06 16 41 H 0.08 1.48 7.41 -51.93 -0.38 1.10 16 42 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.08 1.20 7.30 -51.93 -0.38 0.82 16 46 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 47 H 0.07 1.06 6.52 -51.93 -0.34 0.72 16 48 H 0.07 0.78 5.86 -51.93 -0.30 0.47 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -32.93 354.37 -8.35 -41.28 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -8.66 Total: -2.41 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.45 Total: -11.82 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.35 Total: -36.47 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.93 -8.35 -41.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360265386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.091 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds