Wall clock time and date at job start Tue Mar 31 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47375 * 2 1 4 4 C 1.52998 * 109.47002 * 239.99961 * 2 1 3 5 5 C 1.53004 * 109.46905 * 120.00457 * 2 1 3 6 6 H 1.09005 * 108.44756 * 182.08706 * 5 2 1 7 7 C 1.52569 * 108.51000 * 299.62458 * 5 2 1 8 8 C 1.50878 * 109.35956 * 206.26751 * 7 5 2 9 9 C 1.53945 * 110.09623 * 268.11647 * 8 7 5 10 10 N 1.47601 * 112.14236 * 40.56900 * 9 8 7 11 11 C 1.34779 * 118.64295 * 222.11080 * 10 9 8 12 12 O 1.21279 * 119.99911 * 180.02562 * 11 10 9 13 13 C 1.50702 * 120.00033 * 0.02562 * 11 10 9 14 14 C 1.53002 * 109.47071 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46533 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00759 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99349 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00340 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99764 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47521 * 89.99455 * 19 17 15 21 21 H 1.48503 * 109.46828 * 209.99618 * 19 17 15 22 22 H 1.48503 * 109.46844 * 329.99016 * 19 17 15 23 23 C 1.44580 * 122.71550 * 42.12715 * 10 9 8 24 24 C 1.47086 * 108.51642 * 64.39697 * 5 2 1 25 25 H 1.09003 * 109.46894 * 300.00236 * 1 2 3 26 26 H 1.08999 * 109.47530 * 59.99710 * 1 2 3 27 27 H 1.09007 * 109.47503 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47190 * 172.70594 * 3 2 1 29 29 H 1.09004 * 109.47296 * 292.70585 * 3 2 1 30 30 H 1.09007 * 109.47200 * 52.70301 * 3 2 1 31 31 H 1.09004 * 109.47072 * 300.00555 * 4 2 1 32 32 H 1.08998 * 109.47212 * 59.99674 * 4 2 1 33 33 H 1.08996 * 109.47552 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.49379 * 326.24014 * 7 5 2 35 35 H 1.09008 * 109.48676 * 86.30785 * 7 5 2 36 36 H 1.09004 * 109.36806 * 147.92639 * 8 7 5 37 37 H 1.08996 * 109.36530 * 28.31174 * 8 7 5 38 38 H 1.08999 * 108.95361 * 279.87768 * 9 8 7 39 39 H 1.09007 * 108.94665 * 161.24606 * 9 8 7 40 40 H 1.08997 * 109.47016 * 300.00857 * 13 11 10 41 41 H 1.09006 * 109.46773 * 60.00522 * 13 11 10 42 42 H 1.09000 * 109.47027 * 300.00364 * 14 13 11 43 43 H 1.08993 * 109.47051 * 60.00308 * 14 13 11 44 44 H 0.97002 * 119.99999 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.44838 * 149.23884 * 23 10 9 46 46 H 1.08998 * 109.42848 * 29.30041 * 23 10 9 47 47 H 1.09005 * 109.32944 * 296.20126 * 24 5 2 48 48 H 1.08995 * 109.32895 * 55.67911 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7214 1.2492 6 1 3.1292 -0.6792 1.2514 7 6 1.5271 0.0202 2.4800 8 6 2.4676 -0.2182 3.6355 9 6 2.0048 -1.4390 4.4511 10 7 1.5297 -2.5375 3.5873 11 6 0.4168 -3.2072 3.9470 12 8 0.0048 -4.1144 3.2556 13 6 -0.3158 -2.8286 5.2085 14 6 -1.5340 -3.7378 5.3832 15 6 -2.2668 -3.3587 6.6443 16 1 -1.9002 -2.5506 7.2598 17 6 -3.4048 -4.0444 7.0128 18 7 -3.8510 -5.0288 6.2635 19 14 -4.3137 -3.5742 8.5756 20 1 -5.3358 -2.5434 8.2628 21 1 -4.9788 -4.7751 9.1417 22 1 -3.3487 -3.0303 9.5647 23 6 2.2091 -2.9251 2.3713 24 6 1.6274 -2.1313 1.1756 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1222 1.4451 0.1305 29 1 1.7872 1.9172 -0.9480 30 1 1.5740 1.9926 0.8176 31 1 1.6765 -1.7489 -1.2493 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7217 -1.2491 34 1 1.4764 1.0878 2.2665 35 1 0.5337 -0.3470 2.7381 36 1 2.4808 0.6621 4.2783 37 1 3.4720 -0.3989 3.2526 38 1 1.1952 -1.1352 5.1147 39 1 2.8386 -1.7985 5.0543 40 1 0.3497 -2.9448 6.0638 41 1 -0.6431 -1.7910 5.1411 42 1 -2.1995 -3.6219 4.5277 43 1 -1.2064 -4.7751 5.4507 44 1 -4.6518 -5.5110 6.5226 45 1 2.0682 -3.9925 2.2013 46 1 3.2734 -2.7100 2.4663 47 1 0.5392 -2.1905 1.1985 48 1 1.9901 -2.5651 0.2438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360265386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:20 Heat of formation + Delta-G solvation = -85.065242 kcal Electronic energy + Delta-G solvation = -23612.287023 eV Core-core repulsion = 20472.190114 eV Total energy + Delta-G solvation = -3140.096910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60597 -39.93273 -37.09641 -35.63106 -33.71837 -33.54593 -32.41909 -28.73412 -28.37414 -28.17278 -26.78096 -25.88302 -23.91095 -22.31078 -21.84048 -19.62498 -19.29765 -18.70100 -17.62717 -17.15625 -16.92908 -16.43468 -16.12809 -15.44806 -15.19231 -15.06091 -14.77695 -14.59650 -14.32348 -14.25340 -13.89397 -13.68212 -13.31516 -13.26109 -12.88085 -12.82026 -12.71433 -12.59247 -12.49965 -12.42324 -12.25568 -11.99913 -11.90386 -11.83285 -11.76177 -11.49331 -11.30782 -11.16189 -10.95437 -10.86361 -10.57793 -10.57401 -9.51661 -8.18416 -6.32984 1.41346 1.44532 1.55476 1.72331 2.16279 2.43173 3.14354 3.62679 3.74263 3.78360 3.91800 4.02053 4.19810 4.26991 4.33802 4.37107 4.41559 4.47799 4.51792 4.61263 4.68243 4.75406 4.79387 4.84676 4.88584 4.89792 4.95550 4.98983 5.09729 5.10448 5.13398 5.15741 5.24637 5.27091 5.33367 5.37647 5.44983 5.47468 5.52683 5.61021 5.62309 5.67570 5.82599 5.88427 6.16824 6.42483 6.85386 7.33248 7.37769 8.94428 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.003737 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.211299 B = 7491.639675 C = 7517.429427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.144 4.144 5 C -0.067 4.067 6 H 0.083 0.917 7 C -0.116 4.116 8 C -0.121 4.121 9 C 0.096 3.904 10 N -0.600 5.600 11 C 0.502 3.498 12 O -0.591 6.591 13 C -0.116 4.116 14 C 0.045 3.955 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.254 1.254 23 C 0.114 3.886 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.098 0.902 42 H -0.022 1.022 43 H -0.020 1.020 44 H 0.263 0.737 45 H 0.051 0.949 46 H 0.103 0.897 47 H 0.032 0.968 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.291 16.080 -10.157 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.194 4.194 4 C -0.201 4.201 5 C -0.085 4.085 6 H 0.102 0.898 7 C -0.154 4.154 8 C -0.159 4.159 9 C -0.025 4.025 10 N -0.333 5.333 11 C 0.292 3.708 12 O -0.471 6.471 13 C -0.156 4.156 14 C 0.007 3.993 15 C -0.581 4.581 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.177 1.177 23 C -0.009 4.009 24 C -0.165 4.165 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.116 0.884 42 H -0.004 1.004 43 H -0.002 1.002 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.121 0.879 47 H 0.051 0.949 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.004 15.507 -10.540 25.994 hybrid contribution -1.206 -0.651 0.414 1.431 sum 16.798 14.856 -10.126 24.605 Atomic orbital electron populations 1.21947 0.96113 1.00658 1.01467 1.20646 0.94517 0.96371 0.95080 1.21904 1.01414 0.94347 1.01757 1.21963 1.01478 0.99914 0.96740 1.20079 1.00863 0.93179 0.94376 0.89829 1.21267 0.98510 1.00947 0.94654 1.21745 0.99815 0.96944 0.97412 1.22316 1.00888 0.86734 0.92575 1.47836 1.26037 1.34417 1.24967 1.21389 0.80787 0.81216 0.87369 1.90630 1.67436 1.32802 1.56237 1.21635 0.97682 1.01696 0.94543 1.18667 0.92003 0.93454 0.95165 1.21703 1.10285 1.17756 1.08331 0.90598 1.26159 0.98501 0.94707 1.01062 1.70188 1.23976 1.23157 1.40517 0.85308 0.78616 0.77658 0.78585 1.19669 1.21143 1.17748 1.21465 0.97162 0.98533 0.83699 1.21341 1.00037 0.96753 0.98376 0.93125 0.92433 0.94651 0.91597 0.92666 0.92227 0.93291 0.92574 0.91520 0.89838 0.94588 0.88585 0.89917 0.89876 0.90052 0.88195 0.88384 1.00359 1.00166 0.92859 0.93032 0.87895 0.94871 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 7.91 71.98 0.57 -2.47 16 2 C -0.07 -1.10 0.56 -52.18 -0.03 -1.13 16 3 C -0.14 -1.77 8.00 71.98 0.58 -1.20 16 4 C -0.14 -2.22 7.95 71.98 0.57 -1.65 16 5 C -0.07 -1.17 1.06 -12.77 -0.01 -1.19 16 6 H 0.08 1.18 7.35 -2.38 -0.02 1.16 16 7 C -0.12 -2.09 3.66 29.76 0.11 -1.98 16 8 C -0.12 -1.73 5.71 30.22 0.17 -1.56 16 9 C 0.10 1.95 5.95 86.49 0.51 2.46 16 10 N -0.60 -17.49 2.24 -818.18 -1.83 -19.32 16 11 C 0.50 20.74 7.62 87.66 0.67 21.41 16 12 O -0.59 -30.56 15.42 -3.03 -0.05 -30.61 16 13 C -0.12 -4.92 3.96 29.85 0.12 -4.80 16 14 C 0.04 2.59 4.26 29.85 0.13 2.71 16 15 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 16 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 17 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 18 N -0.94 -60.69 13.29 21.45 0.28 -60.40 16 19 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 23 C 0.11 2.94 5.38 87.37 0.47 3.41 16 24 C -0.13 -3.01 4.36 29.39 0.13 -2.88 16 25 H 0.05 1.11 7.00 -2.39 -0.02 1.09 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.03 0.90 6.54 -2.38 -0.02 0.88 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.77 6.25 -2.38 -0.01 0.75 16 31 H 0.05 0.87 6.20 -2.38 -0.01 0.85 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.27 5.54 -2.39 -0.01 1.25 16 35 H 0.04 0.90 7.21 -2.38 -0.02 0.88 16 36 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.08 0.92 7.31 -2.39 -0.02 0.91 16 38 H 0.08 1.78 5.82 -2.39 -0.01 1.77 16 39 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.10 3.75 8.02 -2.39 -0.02 3.74 16 41 H 0.10 3.73 7.41 -2.38 -0.02 3.71 16 42 H -0.02 -1.45 8.10 -2.39 -0.02 -1.47 16 43 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 44 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 45 H 0.05 1.63 7.30 -2.39 -0.02 1.61 16 46 H 0.10 1.90 8.06 -2.39 -0.02 1.88 16 47 H 0.03 1.05 6.52 -2.38 -0.02 1.03 16 48 H 0.08 1.78 5.86 -2.39 -0.01 1.76 16 Total: -1.00 -77.36 354.37 6.02 -71.35 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.91 Total: 12.29 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.68 Total: -20.17 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.55 Total: -79.72 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.05 Total: -30.61 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -77.36 6.02 -71.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360265386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.720 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds