Wall clock time and date at job start Tue Mar 31 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 C 1.52991 * 109.47316 * 119.99918 * 2 1 3 5 5 C 1.53005 * 109.46838 * 66.75239 * 4 2 1 6 6 C 1.53001 * 110.01781 * 48.06494 * 5 4 2 7 7 N 1.46496 * 109.47071 * 174.95719 * 6 5 4 8 8 C 1.34780 * 119.99794 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00139 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99741 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.47018 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47115 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00292 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99812 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99820 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47131 * 59.99539 * 16 14 12 18 18 H 1.48499 * 109.47089 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47090 * 299.99653 * 16 14 12 20 20 C 1.54269 * 110.03384 * 286.61891 * 5 4 2 21 21 C 1.54884 * 104.19746 * 264.32674 * 20 5 4 22 22 C 1.54890 * 102.75068 * 322.05852 * 21 20 5 23 23 C 1.53878 * 110.03286 * 169.45693 * 5 4 2 24 24 H 1.08996 * 109.46639 * 281.47690 * 1 2 3 25 25 H 1.08999 * 109.46562 * 41.47897 * 1 2 3 26 26 H 1.08997 * 109.47003 * 161.47590 * 1 2 3 27 27 H 1.09003 * 109.47467 * 240.00518 * 2 1 3 28 28 H 1.09005 * 109.46532 * 64.77458 * 3 2 1 29 29 H 1.08991 * 109.47022 * 184.77494 * 3 2 1 30 30 H 1.09000 * 109.46906 * 304.78109 * 3 2 1 31 31 H 1.09003 * 109.47435 * 306.75290 * 4 2 1 32 32 H 1.09004 * 109.47604 * 186.75046 * 4 2 1 33 33 H 1.08994 * 109.46876 * 294.95844 * 6 5 4 34 34 H 1.09003 * 109.46566 * 54.95758 * 6 5 4 35 35 H 0.97005 * 120.00191 * 359.97438 * 7 6 5 36 36 H 1.08994 * 109.47461 * 299.99634 * 10 8 7 37 37 H 1.09009 * 109.47434 * 59.99941 * 10 8 7 38 38 H 1.09003 * 109.46968 * 299.99597 * 11 10 8 39 39 H 1.08998 * 109.47359 * 59.99743 * 11 10 8 40 40 H 0.97006 * 120.00012 * 180.02562 * 15 14 12 41 41 H 1.09001 * 110.48389 * 145.64276 * 20 5 4 42 42 H 1.09009 * 110.48052 * 23.00637 * 20 5 4 43 43 H 1.09001 * 110.75749 * 203.74133 * 21 20 5 44 44 H 1.09005 * 110.75460 * 80.37016 * 21 20 5 45 45 H 1.08993 * 110.48453 * 156.62126 * 22 21 20 46 46 H 1.09005 * 110.47943 * 279.13329 * 22 21 20 47 47 H 1.09000 * 110.03263 * 0.02562 * 23 5 4 48 48 H 1.08996 * 110.07372 * 238.59528 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6732 -2.2043 1.1672 6 6 2.0529 -2.7627 -0.2057 7 7 1.8085 -4.2069 -0.2302 8 6 2.0727 -4.9163 -1.3453 9 8 2.5123 -4.3589 -2.3287 10 6 1.8218 -6.4020 -1.3703 11 6 2.2014 -6.9603 -2.7433 12 6 1.9500 -8.4460 -2.7684 13 1 1.5590 -8.9425 -1.8927 14 6 2.2201 -9.1717 -3.9093 15 7 2.6967 -8.5673 -4.9756 16 14 1.9091 -11.0134 -3.9402 17 1 0.4712 -11.2770 -3.6793 18 1 2.2774 -11.5552 -5.2729 19 1 2.7310 -11.6718 -2.8932 20 6 0.1618 -2.3894 1.4146 21 6 0.0622 -2.7262 2.9230 22 6 1.3034 -3.6231 3.1558 23 6 2.3990 -2.9888 2.2743 24 1 -0.3632 0.2045 1.0071 25 1 -0.3632 0.7699 -0.6807 26 1 -0.3633 -0.9744 -0.3265 27 1 1.8934 -0.5138 -0.8900 28 1 1.7482 1.9310 0.9297 29 1 3.1266 1.4437 -0.0855 30 1 1.6085 1.9805 -0.8441 31 1 1.5815 -0.2819 2.1351 32 1 3.1234 -0.6178 1.3117 33 1 1.4498 -2.2790 -0.9741 34 1 3.1085 -2.5695 -0.3972 35 1 1.4573 -4.6528 0.5565 36 1 2.4250 -6.8853 -0.6018 37 1 0.7663 -6.5956 -1.1789 38 1 1.5978 -6.4770 -3.5115 39 1 3.2568 -6.7668 -2.9351 40 1 2.8864 -9.0777 -5.7783 41 1 -0.2252 -3.2122 0.8135 42 1 -0.3766 -1.4678 1.1930 43 1 -0.8557 -3.2739 3.1368 44 1 0.1219 -1.8200 3.5259 45 1 1.5979 -3.6019 4.2049 46 1 1.0999 -4.6458 2.8381 47 1 3.0122 -2.3128 2.8703 48 1 3.0216 -3.7677 1.8343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360329488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:08 Heat of formation + Delta-G solvation = -74.100347 kcal Electronic energy + Delta-G solvation = -22997.462179 eV Core-core repulsion = 19857.840743 eV Total energy + Delta-G solvation = -3139.621436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.42590 -38.55907 -35.74361 -33.95483 -33.39322 -31.16772 -30.37459 -29.30232 -27.14249 -26.69070 -25.28470 -24.43910 -21.49599 -20.96103 -20.19995 -19.63214 -18.74869 -16.89919 -16.26346 -15.95732 -15.40602 -15.08874 -14.83547 -14.49762 -14.29401 -14.13524 -13.75024 -13.63197 -13.08842 -12.95114 -12.63738 -12.37202 -12.23448 -12.19361 -12.09198 -11.84346 -11.27357 -11.24834 -11.12042 -10.97032 -10.88894 -10.85252 -10.60583 -10.58922 -10.53968 -10.38922 -10.09834 -9.91169 -9.62098 -9.13831 -8.95313 -8.64187 -8.28756 -5.93164 -3.97494 3.34470 3.36211 3.40554 3.42269 3.67100 4.28565 4.40169 4.48162 4.51252 4.72990 4.79047 4.85168 5.08270 5.18321 5.29276 5.30821 5.37812 5.41506 5.42791 5.49087 5.51997 5.54695 5.59918 5.67615 5.71584 5.74639 5.77387 5.81771 5.87562 5.92556 5.98483 6.04074 6.14812 6.17052 6.20658 6.24874 6.26157 6.28534 6.30403 6.85960 6.94684 7.77385 7.90598 7.99288 8.10923 8.42386 8.87257 9.11310 9.65714 11.17766 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.003353 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.404595 B = 8349.867317 C = 9037.760766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.146 4.146 4 C -0.096 4.096 5 C -0.069 4.069 6 C 0.129 3.871 7 N -0.742 5.742 8 C 0.507 3.493 9 O -0.537 6.537 10 C -0.131 4.131 11 C 0.038 3.962 12 C -0.527 4.527 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.147 4.147 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.396 0.604 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 17.741 18.003 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.125 4.125 3 C -0.204 4.204 4 C -0.134 4.134 5 C -0.070 4.070 6 C 0.005 3.995 7 N -0.397 5.397 8 C 0.296 3.704 9 O -0.412 6.412 10 C -0.171 4.171 11 C 0.000 4.000 12 C -0.566 4.566 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.184 4.184 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.160 4.160 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.115 18.118 17.071 25.231 hybrid contribution -0.240 -1.245 0.349 1.315 sum -4.355 16.874 17.419 24.640 Atomic orbital electron populations 1.22203 0.95554 1.02046 1.01273 1.21269 0.95954 0.96134 0.99099 1.21855 1.00947 0.96086 1.01490 1.21695 1.00807 0.93136 0.97720 1.21417 0.95859 0.95318 0.94370 1.21382 1.00774 0.81303 0.96010 1.46276 1.68819 1.08319 1.16238 1.21526 0.76334 0.90759 0.81807 1.90661 1.43887 1.72466 1.34204 1.21857 1.02191 0.88740 1.04267 1.18883 0.97799 0.94561 0.88738 1.21199 1.43714 0.93164 0.98495 0.92694 1.25025 0.95268 0.98404 0.95684 1.69990 1.44170 1.35832 1.02863 0.86656 0.78614 0.85570 0.77106 1.20264 1.21293 1.20263 1.23201 0.95407 1.03607 0.96157 1.22486 0.97835 0.99283 0.96526 1.22386 0.95343 0.99179 0.99489 1.22334 0.97897 0.99513 0.96231 0.92385 0.93032 0.91501 0.90295 0.92964 0.92787 0.92750 0.91545 0.91803 0.91507 0.92126 0.76979 0.90412 0.90405 0.95861 0.95862 0.92918 0.91205 0.88669 0.91778 0.91834 0.91888 0.91585 0.91643 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 7.52 37.16 0.28 -0.96 16 2 C -0.11 -0.91 2.45 -90.62 -0.22 -1.13 16 3 C -0.15 -1.12 9.15 37.16 0.34 -0.78 16 4 C -0.10 -0.78 3.76 -26.73 -0.10 -0.88 16 5 C -0.07 -0.64 0.46 -153.38 -0.07 -0.71 16 6 C 0.13 1.65 3.56 -4.04 -0.01 1.64 16 7 N -0.74 -10.72 4.37 -60.30 -0.26 -10.99 16 8 C 0.51 10.04 7.83 -10.99 -0.09 9.95 16 9 O -0.54 -13.00 15.98 5.56 0.09 -12.91 16 10 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 11 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 12 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.15 -1.27 4.57 -25.07 -0.11 -1.38 16 21 C -0.12 -0.94 6.91 -24.74 -0.17 -1.12 16 22 C -0.13 -1.01 6.60 -25.07 -0.17 -1.18 16 23 C -0.12 -1.09 5.40 -25.61 -0.14 -1.22 16 24 H 0.06 0.41 6.95 -51.93 -0.36 0.05 16 25 H 0.05 0.40 7.94 -51.93 -0.41 -0.01 16 26 H 0.07 0.59 5.99 -51.93 -0.31 0.28 16 27 H 0.08 0.81 6.04 -51.93 -0.31 0.50 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.41 8.05 -51.93 -0.42 -0.01 16 31 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.92 6.26 -51.93 -0.33 0.60 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 4.77 6.70 -40.82 -0.27 4.50 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.07 0.70 7.11 -51.93 -0.37 0.33 16 42 H 0.10 0.76 3.44 -51.92 -0.18 0.58 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 47 H 0.06 0.54 7.64 -51.93 -0.40 0.14 16 48 H 0.07 0.73 7.03 -51.93 -0.36 0.36 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -33.22 361.56 -8.89 -42.11 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.73 Total: 0.14 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.15 Total: -13.64 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.47 Total: -38.02 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.22 -8.89 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360329488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.995 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds