Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47129 * 2 1 4 4 C 1.52991 * 109.47316 * 119.99918 * 2 1 3 5 5 C 1.53005 * 109.46838 * 66.75239 * 4 2 1 6 6 C 1.53001 * 110.01781 * 48.06494 * 5 4 2 7 7 N 1.46496 * 109.47071 * 174.95719 * 6 5 4 8 8 C 1.34780 * 119.99794 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00139 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99741 * 179.97438 * 8 7 6 11 11 C 1.53001 * 109.47018 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47115 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00292 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99812 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99820 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47131 * 59.99539 * 16 14 12 18 18 H 1.48499 * 109.47089 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47090 * 299.99653 * 16 14 12 20 20 C 1.54269 * 110.03384 * 286.61891 * 5 4 2 21 21 C 1.54884 * 104.19746 * 264.32674 * 20 5 4 22 22 C 1.54890 * 102.75068 * 322.05852 * 21 20 5 23 23 C 1.53878 * 110.03286 * 169.45693 * 5 4 2 24 24 H 1.08996 * 109.46639 * 281.47690 * 1 2 3 25 25 H 1.08999 * 109.46562 * 41.47897 * 1 2 3 26 26 H 1.08997 * 109.47003 * 161.47590 * 1 2 3 27 27 H 1.09003 * 109.47467 * 240.00518 * 2 1 3 28 28 H 1.09005 * 109.46532 * 64.77458 * 3 2 1 29 29 H 1.08991 * 109.47022 * 184.77494 * 3 2 1 30 30 H 1.09000 * 109.46906 * 304.78109 * 3 2 1 31 31 H 1.09003 * 109.47435 * 306.75290 * 4 2 1 32 32 H 1.09004 * 109.47604 * 186.75046 * 4 2 1 33 33 H 1.08994 * 109.46876 * 294.95844 * 6 5 4 34 34 H 1.09003 * 109.46566 * 54.95758 * 6 5 4 35 35 H 0.97005 * 120.00191 * 359.97438 * 7 6 5 36 36 H 1.08994 * 109.47461 * 299.99634 * 10 8 7 37 37 H 1.09009 * 109.47434 * 59.99941 * 10 8 7 38 38 H 1.09003 * 109.46968 * 299.99597 * 11 10 8 39 39 H 1.08998 * 109.47359 * 59.99743 * 11 10 8 40 40 H 0.97006 * 120.00012 * 180.02562 * 15 14 12 41 41 H 1.09001 * 110.48389 * 145.64276 * 20 5 4 42 42 H 1.09009 * 110.48052 * 23.00637 * 20 5 4 43 43 H 1.09001 * 110.75749 * 203.74133 * 21 20 5 44 44 H 1.09005 * 110.75460 * 80.37016 * 21 20 5 45 45 H 1.08993 * 110.48453 * 156.62126 * 22 21 20 46 46 H 1.09005 * 110.47943 * 279.13329 * 22 21 20 47 47 H 1.09000 * 110.03263 * 0.02562 * 23 5 4 48 48 H 1.08996 * 110.07372 * 238.59528 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6732 -2.2043 1.1672 6 6 2.0529 -2.7627 -0.2057 7 7 1.8085 -4.2069 -0.2302 8 6 2.0727 -4.9163 -1.3453 9 8 2.5123 -4.3589 -2.3287 10 6 1.8218 -6.4020 -1.3703 11 6 2.2014 -6.9603 -2.7433 12 6 1.9500 -8.4460 -2.7684 13 1 1.5590 -8.9425 -1.8927 14 6 2.2201 -9.1717 -3.9093 15 7 2.6967 -8.5673 -4.9756 16 14 1.9091 -11.0134 -3.9402 17 1 0.4712 -11.2770 -3.6793 18 1 2.2774 -11.5552 -5.2729 19 1 2.7310 -11.6718 -2.8932 20 6 0.1618 -2.3894 1.4146 21 6 0.0622 -2.7262 2.9230 22 6 1.3034 -3.6231 3.1558 23 6 2.3990 -2.9888 2.2743 24 1 -0.3632 0.2045 1.0071 25 1 -0.3632 0.7699 -0.6807 26 1 -0.3633 -0.9744 -0.3265 27 1 1.8934 -0.5138 -0.8900 28 1 1.7482 1.9310 0.9297 29 1 3.1266 1.4437 -0.0855 30 1 1.6085 1.9805 -0.8441 31 1 1.5815 -0.2819 2.1351 32 1 3.1234 -0.6178 1.3117 33 1 1.4498 -2.2790 -0.9741 34 1 3.1085 -2.5695 -0.3972 35 1 1.4573 -4.6528 0.5565 36 1 2.4250 -6.8853 -0.6018 37 1 0.7663 -6.5956 -1.1789 38 1 1.5978 -6.4770 -3.5115 39 1 3.2568 -6.7668 -2.9351 40 1 2.8864 -9.0777 -5.7783 41 1 -0.2252 -3.2122 0.8135 42 1 -0.3766 -1.4678 1.1930 43 1 -0.8557 -3.2739 3.1368 44 1 0.1219 -1.8200 3.5259 45 1 1.5979 -3.6019 4.2049 46 1 1.0999 -4.6458 2.8381 47 1 3.0122 -2.3128 2.8703 48 1 3.0216 -3.7677 1.8343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360329488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -93.606910 kcal Electronic energy + Delta-G solvation = -22998.308047 eV Core-core repulsion = 19857.840743 eV Total energy + Delta-G solvation = -3140.467304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.41332 -39.98968 -36.44404 -35.61265 -35.19865 -33.05422 -31.41584 -29.97788 -28.25878 -27.77951 -26.60048 -25.47649 -23.43862 -21.64556 -21.17470 -20.86579 -19.65545 -18.79316 -17.55717 -17.29418 -16.68849 -16.47688 -16.25710 -15.73984 -15.50050 -14.93199 -14.78679 -14.53875 -14.45739 -14.12902 -13.94105 -13.74180 -13.28041 -13.21455 -12.99524 -12.84982 -12.79921 -12.72709 -12.51059 -11.96416 -11.92546 -11.90864 -11.72025 -11.63334 -11.49456 -11.33114 -11.31063 -11.23264 -11.17803 -10.82367 -10.67965 -10.56482 -10.00456 -8.17997 -6.32471 1.41652 1.46513 1.54250 1.72218 2.29064 2.45857 3.14638 3.55325 3.61946 3.78225 4.05750 4.08099 4.13252 4.16510 4.37197 4.41388 4.49397 4.53589 4.55805 4.60085 4.63318 4.73988 4.80521 4.81759 4.89986 4.96254 4.99241 5.01713 5.08989 5.09701 5.11466 5.18485 5.20963 5.30486 5.33340 5.41344 5.48276 5.49312 5.51614 5.55602 5.57148 5.62356 5.63045 5.84934 6.17304 6.61847 6.85682 7.35408 7.38118 8.94556 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.003353 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.404595 B = 8349.867317 C = 9037.760766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.144 4.144 4 C -0.091 4.091 5 C -0.060 4.060 6 C 0.129 3.871 7 N -0.714 5.714 8 C 0.508 3.492 9 O -0.591 6.591 10 C -0.120 4.120 11 C 0.043 3.957 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.975 3.025 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.262 1.262 20 C -0.147 4.147 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.412 0.588 36 H 0.102 0.898 37 H 0.103 0.897 38 H -0.019 1.019 39 H -0.019 1.019 40 H 0.263 0.737 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 17.346 21.126 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.201 4.201 4 C -0.128 4.128 5 C -0.060 4.060 6 C 0.006 3.994 7 N -0.368 5.368 8 C 0.296 3.704 9 O -0.471 6.471 10 C -0.160 4.160 11 C 0.006 3.994 12 C -0.583 4.583 13 H 0.094 0.906 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.799 3.201 17 H -0.186 1.186 18 H -0.213 1.213 19 H -0.187 1.187 20 C -0.184 4.184 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.160 4.160 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.249 0.751 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.000 1.000 39 H 0.000 1.000 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.410 17.735 20.272 27.473 hybrid contribution 0.172 -1.043 -0.630 1.230 sum -5.238 16.692 19.642 26.304 Atomic orbital electron populations 1.22182 0.94972 1.01456 1.02248 1.21248 0.96464 0.96624 0.98288 1.21831 1.00754 0.95385 1.02177 1.21680 1.00955 0.92070 0.98142 1.21375 0.96655 0.96018 0.91985 1.21503 0.99695 0.79823 0.98385 1.45991 1.66703 1.09058 1.15056 1.21337 0.76060 0.90638 0.82324 1.90646 1.46748 1.73249 1.36474 1.21637 1.04020 0.89507 1.00802 1.18672 0.94462 0.94781 0.91519 1.21689 1.43484 0.93759 0.99347 0.90602 1.26158 0.94691 1.04517 0.95105 1.70178 1.45495 1.38314 1.03785 0.85358 0.79306 0.78136 0.77347 1.18639 1.21296 1.18652 1.23202 0.94526 1.03578 0.97081 1.22471 0.97852 0.99808 0.95388 1.22400 0.95048 0.98998 0.99903 1.22337 0.98171 0.99288 0.96206 0.90702 0.92978 0.92624 0.92879 0.91564 0.93049 0.92891 0.89593 0.91877 0.92676 0.93689 0.75091 0.87938 0.87909 1.00012 1.00034 0.92840 0.92667 0.87793 0.91195 0.90561 0.90700 0.91861 0.90476 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 7.52 71.98 0.54 -1.71 16 2 C -0.11 -1.77 2.45 -10.79 -0.03 -1.80 16 3 C -0.14 -2.04 9.15 71.98 0.66 -1.38 16 4 C -0.09 -1.32 3.76 30.59 0.11 -1.21 16 5 C -0.06 -1.02 0.46 -51.45 -0.02 -1.05 16 6 C 0.13 3.35 3.56 86.38 0.31 3.66 16 7 N -0.71 -20.56 4.37 -463.07 -2.02 -22.58 16 8 C 0.51 20.61 7.83 87.66 0.69 21.29 16 9 O -0.59 -30.30 15.98 -3.02 -0.05 -30.35 16 10 C -0.12 -5.00 5.64 29.85 0.17 -4.83 16 11 C 0.04 2.48 4.26 29.85 0.13 2.61 16 12 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 13 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 14 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 15 N -0.94 -60.42 13.29 21.45 0.28 -60.14 16 16 Si 0.98 44.78 29.54 68.60 2.03 46.81 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 20 C -0.15 -2.24 4.57 31.67 0.14 -2.10 16 21 C -0.12 -1.42 6.91 31.88 0.22 -1.20 16 22 C -0.13 -1.65 6.60 31.67 0.21 -1.44 16 23 C -0.12 -1.92 5.40 31.32 0.17 -1.76 16 24 H 0.07 0.86 6.95 -2.39 -0.02 0.84 16 25 H 0.05 0.76 7.94 -2.39 -0.02 0.74 16 26 H 0.05 0.95 5.99 -2.39 -0.01 0.94 16 27 H 0.05 1.15 6.04 -2.39 -0.01 1.13 16 28 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.76 8.05 -2.39 -0.02 0.74 16 31 H 0.09 0.98 7.95 -2.39 -0.02 0.96 16 32 H 0.06 0.95 8.08 -2.38 -0.02 0.93 16 33 H 0.05 1.59 6.26 -2.39 -0.01 1.58 16 34 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.41 9.34 6.70 -92.70 -0.62 8.72 16 36 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 38 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 39 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 40 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 41 H 0.05 1.01 7.11 -2.39 -0.02 1.00 16 42 H 0.10 1.42 3.44 -2.38 -0.01 1.41 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 0.76 8.14 -2.38 -0.02 0.75 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 0.87 7.85 -2.38 -0.02 0.85 16 47 H 0.08 1.06 7.64 -2.39 -0.02 1.04 16 48 H 0.05 1.05 7.03 -2.39 -0.02 1.03 16 Total: -1.00 -75.53 361.56 4.53 -71.00 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.30 Total: 17.49 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 3.99 Total: -22.23 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -1.74 Total: -82.72 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.53 4.53 -71.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360329488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.607 kcal (2) G-P(sol) polarization free energy of solvation -75.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds