Wall clock time and date at job start Tue Mar 31 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47555 * 119.99739 * 2 1 3 5 5 C 1.52998 * 109.46952 * 64.99928 * 4 2 1 6 6 H 1.08997 * 107.86064 * 298.64498 * 5 4 2 7 7 C 1.54897 * 108.16170 * 181.87859 * 5 4 2 8 8 C 1.54836 * 110.14585 * 196.92466 * 7 5 4 9 9 C 1.50128 * 110.81977 * 321.13769 * 8 7 5 10 10 C 1.52522 * 105.41433 * 97.67745 * 9 8 7 11 11 C 1.46239 * 114.27943 * 270.59700 * 10 9 8 12 12 N 1.43441 * 108.15826 * 55.40596 * 5 4 2 13 13 C 1.34771 * 120.53531 * 33.55490 * 12 5 4 14 14 O 1.21283 * 120.00165 * 355.85511 * 13 12 5 15 15 C 1.50699 * 119.99915 * 175.84825 * 13 12 5 16 16 C 1.53002 * 109.47425 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47425 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99528 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00049 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00054 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47175 * 90.00297 * 21 19 17 23 23 H 1.48500 * 109.47118 * 210.00257 * 21 19 17 24 24 H 1.48497 * 109.47189 * 330.00209 * 21 19 17 25 25 H 1.09003 * 109.46894 * 299.99735 * 1 2 3 26 26 H 1.08996 * 109.47254 * 60.00185 * 1 2 3 27 27 H 1.09007 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47450 * 239.99949 * 2 1 3 29 29 H 1.09003 * 109.47432 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47051 * 300.00082 * 3 2 1 31 31 H 1.09001 * 109.47366 * 59.99921 * 3 2 1 32 32 H 1.09005 * 109.46843 * 305.00132 * 4 2 1 33 33 H 1.08999 * 109.47512 * 185.00082 * 4 2 1 34 34 H 1.09004 * 109.36029 * 76.72008 * 7 5 4 35 35 H 1.09001 * 109.24922 * 317.06790 * 7 5 4 36 36 H 1.09000 * 109.21300 * 200.78686 * 8 7 5 37 37 H 1.09001 * 109.16979 * 81.45434 * 8 7 5 38 38 H 1.09006 * 110.24168 * 338.71054 * 9 8 7 39 39 H 1.08996 * 110.37482 * 216.71782 * 9 8 7 40 40 H 1.09000 * 108.51800 * 149.35844 * 10 9 8 41 41 H 1.08995 * 108.52497 * 31.83838 * 10 9 8 42 42 H 1.09002 * 109.84425 * 298.90239 * 11 10 9 43 43 H 1.09002 * 109.84519 * 177.92280 * 11 10 9 44 44 H 1.09002 * 109.47075 * 300.00225 * 15 13 12 45 45 H 1.09007 * 109.47075 * 60.00199 * 15 13 12 46 46 H 1.08993 * 109.47086 * 300.00386 * 16 15 13 47 47 H 1.09000 * 109.46771 * 60.00352 * 16 15 13 48 48 H 0.97007 * 120.00192 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5465 -2.2425 1.1675 7 6 2.1241 -2.8846 2.4862 8 6 2.1288 -4.4222 2.3044 9 6 0.9348 -4.8695 1.5119 10 6 1.4352 -5.0286 0.0799 11 6 1.3346 -3.8155 -0.7305 12 7 2.1297 -2.7440 -0.0417 13 6 3.2918 -2.3087 -0.5673 14 8 3.8908 -1.3948 -0.0411 15 6 3.8471 -2.9577 -1.8089 16 6 5.1648 -2.2812 -2.1924 17 6 5.7197 -2.9298 -3.4343 18 1 5.1857 -3.7429 -3.9034 19 6 6.9085 -2.4844 -3.9722 20 7 7.5584 -1.4940 -3.4011 21 14 7.5960 -3.2879 -5.5120 22 1 7.0765 -2.5838 -6.7118 23 1 9.0787 -3.2060 -5.4932 24 1 7.1795 -4.7126 -5.5551 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2951 34 1 1.4589 -2.6200 3.3083 35 1 3.1341 -2.5446 2.7152 36 1 2.1081 -4.8993 3.2843 37 1 3.0380 -4.7179 1.7809 38 1 0.1492 -4.1151 1.5554 39 1 0.5636 -5.8220 1.8899 40 1 0.8575 -5.8167 -0.4031 41 1 2.4796 -5.3389 0.1105 42 1 0.2916 -3.5091 -0.8100 43 1 1.7438 -3.9992 -1.7240 44 1 4.0247 -4.0160 -1.6173 45 1 3.1326 -2.8511 -2.6252 46 1 4.9876 -1.2229 -2.3838 47 1 5.8791 -2.3882 -1.3760 48 1 8.3951 -1.1809 -3.7793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360343141.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:56 Heat of formation + Delta-G solvation = -49.324087 kcal Electronic energy + Delta-G solvation = -24198.229677 eV Core-core repulsion = 21059.682620 eV Total energy + Delta-G solvation = -3138.547057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63412 -37.40471 -36.01798 -33.61664 -33.31774 -32.54099 -30.81227 -28.06888 -26.95060 -26.12450 -25.62336 -23.45045 -22.40392 -21.13463 -19.90802 -19.65068 -18.18305 -16.92033 -16.03280 -15.70651 -15.43902 -14.89597 -14.66101 -14.40879 -14.04739 -13.78272 -13.64060 -13.38700 -13.06914 -12.58282 -12.52552 -12.34619 -12.11463 -12.00563 -11.76957 -11.58953 -11.36940 -11.14145 -10.95144 -10.91563 -10.77187 -10.69937 -10.58152 -10.48163 -10.37057 -10.18455 -10.03439 -9.91031 -9.50681 -9.07336 -8.33672 -8.29676 -8.21829 -5.94307 -3.98351 3.28192 3.33981 3.35993 3.40486 3.42983 4.48007 4.63018 4.72305 4.85396 5.06159 5.06276 5.19391 5.23920 5.31135 5.35732 5.40768 5.46831 5.49737 5.63926 5.66851 5.76606 5.79731 5.84781 5.95141 6.00623 6.03175 6.04706 6.08704 6.13743 6.17523 6.21505 6.25246 6.27679 6.29535 6.34241 6.44191 6.60421 6.72300 6.75830 6.95721 7.24111 7.76761 7.87426 7.90140 8.09856 8.42203 8.93102 9.10684 9.65096 11.16548 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.005112 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.730070 B = 5476.416764 C = 6413.591824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.147 4.147 5 C 0.152 3.848 6 H 0.065 0.935 7 C -0.130 4.130 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.144 4.144 11 C 0.115 3.885 12 N -0.612 5.612 13 C 0.516 3.484 14 O -0.521 6.521 15 C -0.130 4.130 16 C 0.039 3.961 17 C -0.526 4.526 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.023 0.977 47 H 0.022 0.978 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.914 -3.932 10.031 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.198 4.198 4 C -0.184 4.184 5 C 0.047 3.953 6 H 0.083 0.917 7 C -0.169 4.169 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.182 4.182 11 C -0.007 4.007 12 N -0.347 5.347 13 C 0.307 3.693 14 O -0.397 6.397 15 C -0.170 4.170 16 C 0.002 3.998 17 C -0.564 4.564 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.411 -3.312 10.283 19.648 hybrid contribution 0.288 -0.544 -0.829 1.032 sum -16.123 -3.856 9.455 19.084 Atomic orbital electron populations 1.21907 0.96694 1.00837 1.00847 1.21002 0.93974 0.96236 0.99263 1.21749 1.01923 0.95869 1.00291 1.22636 1.06598 0.92743 0.96431 1.20590 0.97333 0.93155 0.84250 0.91689 1.22658 1.02103 0.95009 0.97136 1.21548 0.98556 0.95751 0.99814 1.21029 0.98076 1.01004 0.95192 1.20898 1.02606 0.98325 0.96349 1.21036 0.95947 0.86898 0.96825 1.48200 1.23213 1.40501 1.22817 1.21371 0.79091 0.82535 0.86294 1.90484 1.58767 1.28632 1.61845 1.21898 1.01405 1.00588 0.93138 1.18872 0.88951 0.95909 0.96086 1.21224 1.06509 1.17926 1.10763 0.92762 1.25005 0.96959 0.95088 0.97244 1.69996 1.16231 1.26629 1.39966 0.86625 0.78201 0.79731 0.83595 1.20694 1.21246 1.19925 0.93404 0.93391 0.93207 0.91054 0.92008 0.93542 0.93692 0.93565 0.85987 0.91624 0.91601 0.92881 0.91741 0.91442 0.91891 0.91710 0.91207 0.91329 0.88896 0.90627 0.90670 0.95884 0.95946 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.93 37.15 0.33 -1.40 16 2 C -0.09 -1.27 2.23 -90.62 -0.20 -1.47 16 3 C -0.14 -2.07 9.19 37.16 0.34 -1.73 16 4 C -0.15 -2.14 3.47 -26.73 -0.09 -2.23 16 5 C 0.15 1.95 1.49 -68.55 -0.10 1.85 16 6 H 0.07 0.75 5.27 -51.93 -0.27 0.47 16 7 C -0.13 -1.55 5.73 -24.76 -0.14 -1.69 16 8 C -0.12 -1.30 5.65 -27.19 -0.15 -1.45 16 9 C -0.12 -1.07 5.76 -28.40 -0.16 -1.24 16 10 C -0.14 -1.42 5.20 -30.19 -0.16 -1.58 16 11 C 0.11 1.26 5.89 -5.21 -0.03 1.23 16 12 N -0.61 -8.62 2.00 -167.83 -0.34 -8.96 16 13 C 0.52 9.60 5.93 -10.99 -0.07 9.53 16 14 O -0.52 -11.34 11.67 5.56 0.06 -11.27 16 15 C -0.13 -2.63 4.06 -27.88 -0.11 -2.74 16 16 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 17 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 21 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 28 H 0.07 1.24 5.74 -51.93 -0.30 0.94 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.12 2.21 5.21 -53.66 -0.28 1.93 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.82 6.83 -51.93 -0.35 0.47 16 38 H 0.07 0.61 6.29 -51.93 -0.33 0.28 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.80 6.93 -51.93 -0.36 0.44 16 42 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.09 1.04 6.12 -51.93 -0.32 0.73 16 44 H 0.08 1.43 8.13 -51.93 -0.42 1.01 16 45 H 0.07 1.40 7.49 -51.93 -0.39 1.01 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -31.41 354.52 -9.10 -40.51 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.81 Total: -0.05 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.08 Total: -15.57 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.40 Total: -35.63 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.06 Total: -11.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.41 -9.10 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360343141.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.815 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds