Wall clock time and date at job start Tue Mar 31 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47199 * 2 1 4 4 C 1.53005 * 109.47484 * 120.00084 * 2 1 3 5 5 C 1.52997 * 109.47245 * 174.99786 * 4 2 1 6 6 H 1.08998 * 107.85836 * 60.13855 * 5 4 2 7 7 C 1.55398 * 108.42833 * 177.10298 * 5 4 2 8 8 C 1.54841 * 110.21479 * 163.08213 * 7 5 4 9 9 C 1.50122 * 110.81212 * 38.80784 * 8 7 5 10 10 C 1.52525 * 105.41737 * 262.31790 * 9 8 7 11 11 C 1.46235 * 114.28008 * 89.40940 * 10 9 8 12 12 N 1.43430 * 108.16000 * 303.37179 * 5 4 2 13 13 C 1.34777 * 120.53878 * 326.73847 * 12 5 4 14 14 O 1.21282 * 119.99717 * 353.62220 * 13 12 5 15 15 C 1.50702 * 119.99910 * 173.61788 * 13 12 5 16 16 C 1.52999 * 109.46798 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46871 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00480 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00038 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99731 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00154 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47157 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46933 * 119.99511 * 21 19 17 24 24 H 1.48493 * 109.47214 * 239.99203 * 21 19 17 25 25 H 1.09003 * 109.46700 * 299.99578 * 1 2 3 26 26 H 1.08996 * 109.47112 * 59.99710 * 1 2 3 27 27 H 1.09006 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47025 * 239.99712 * 2 1 3 29 29 H 1.08995 * 109.46658 * 60.00375 * 3 2 1 30 30 H 1.09003 * 109.46909 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46841 * 300.00006 * 3 2 1 32 32 H 1.09009 * 109.46763 * 54.99650 * 4 2 1 33 33 H 1.09000 * 109.46763 * 295.00439 * 4 2 1 34 34 H 1.09011 * 109.37006 * 42.82757 * 7 5 4 35 35 H 1.09001 * 109.16804 * 283.21583 * 7 5 4 36 36 H 1.09001 * 109.20825 * 278.46807 * 8 7 5 37 37 H 1.08997 * 109.21291 * 159.15203 * 8 7 5 38 38 H 1.09007 * 110.25089 * 143.34723 * 9 8 7 39 39 H 1.08994 * 110.37213 * 21.35571 * 9 8 7 40 40 H 1.09004 * 108.52230 * 328.16615 * 10 9 8 41 41 H 1.09006 * 108.52108 * 210.65177 * 10 9 8 42 42 H 1.09000 * 109.85056 * 182.08291 * 11 10 9 43 43 H 1.09004 * 109.84545 * 61.09465 * 11 10 9 44 44 H 1.09006 * 109.46673 * 60.00644 * 15 13 12 45 45 H 1.08997 * 109.47358 * 299.99937 * 15 13 12 46 46 H 1.08996 * 109.47387 * 60.00201 * 16 15 13 47 47 H 1.09007 * 109.47466 * 299.99905 * 16 15 13 48 48 H 0.97005 * 119.99600 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 1 3.9713 0.1794 1.1453 7 6 4.0624 -1.4998 2.4994 8 6 5.5110 -2.0165 2.3204 9 6 6.3243 -1.0527 1.5059 10 6 6.3022 -1.6041 0.0840 11 6 5.1870 -1.1230 -0.7304 12 7 3.9159 -1.5058 -0.0282 13 6 3.1152 -2.4640 -0.5354 14 8 2.1502 -2.8435 0.0936 15 6 3.4190 -3.0637 -1.8841 16 6 2.3641 -4.1190 -2.2223 17 6 2.6682 -4.7191 -3.5707 18 1 3.5277 -4.3815 -4.1308 19 6 1.8486 -5.6987 -4.0901 20 7 0.8016 -6.1096 -3.4084 21 14 2.2251 -6.4422 -5.7619 22 1 3.4486 -5.8119 -6.3197 23 1 2.4434 -7.9038 -5.6158 24 1 1.0826 -6.2016 -6.6793 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1370 34 1 3.4090 -2.3358 2.7494 35 1 4.0371 -0.7676 3.3064 36 1 5.4875 -2.9821 1.8152 37 1 5.9728 -2.1364 3.3004 38 1 7.3476 -1.0129 1.8792 39 1 5.8749 -0.0600 1.5325 40 1 6.2497 -2.6917 0.1351 41 1 7.2348 -1.3288 -0.4087 42 1 5.2201 -1.5884 -1.7155 43 1 5.2424 -0.0390 -0.8303 44 1 4.4045 -3.5290 -1.8612 45 1 3.4046 -2.2803 -2.6418 46 1 1.3788 -3.6534 -2.2453 47 1 2.3780 -4.9026 -1.4647 48 1 0.2252 -6.7991 -3.7736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360343143.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:58 Heat of formation + Delta-G solvation = -53.043095 kcal Electronic energy + Delta-G solvation = -24181.961289 eV Core-core repulsion = 21043.252963 eV Total energy + Delta-G solvation = -3138.708325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59213 -37.38261 -36.05791 -33.63149 -33.31738 -32.52241 -30.81026 -28.06688 -26.97985 -26.13677 -25.63536 -23.44928 -22.38275 -21.15514 -19.88490 -19.69258 -18.13173 -16.91763 -16.07422 -15.68678 -15.42011 -14.94676 -14.64530 -14.40468 -14.02762 -13.83031 -13.66641 -13.36992 -13.05714 -12.65485 -12.52762 -12.34722 -12.11483 -12.03519 -11.76962 -11.49413 -11.41739 -11.14907 -10.95315 -10.92897 -10.77584 -10.70979 -10.56909 -10.50776 -10.38326 -10.22375 -10.04369 -9.92279 -9.51153 -9.06046 -8.41538 -8.31711 -8.21453 -5.94473 -3.98376 3.27493 3.33172 3.37030 3.40857 3.43902 4.48046 4.62779 4.72638 4.85722 5.03662 5.05566 5.17239 5.23313 5.29662 5.34845 5.40710 5.44832 5.49149 5.63782 5.66428 5.77266 5.79128 5.83104 5.94011 5.98284 6.01884 6.02107 6.06936 6.13453 6.16759 6.20771 6.24981 6.26747 6.30014 6.34349 6.41849 6.56426 6.66580 6.73990 6.95322 7.22774 7.77133 7.87866 7.90109 8.09829 8.42137 8.92234 9.10848 9.65100 11.16449 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.005084 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.352288 B = 5506.082758 C = 6386.358969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.153 4.153 5 C 0.153 3.847 6 H 0.067 0.933 7 C -0.129 4.129 8 C -0.118 4.118 9 C -0.115 4.115 10 C -0.143 4.143 11 C 0.114 3.886 12 N -0.613 5.613 13 C 0.516 3.484 14 O -0.523 6.523 15 C -0.130 4.130 16 C 0.039 3.961 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.122 0.878 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.023 0.977 47 H 0.022 0.978 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 14.713 9.909 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.190 4.190 5 C 0.048 3.952 6 H 0.084 0.916 7 C -0.168 4.168 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.181 4.181 11 C -0.007 4.007 12 N -0.349 5.349 13 C 0.307 3.693 14 O -0.399 6.399 15 C -0.170 4.170 16 C 0.001 3.999 17 C -0.563 4.563 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.040 0.960 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.853 14.374 10.225 19.737 hybrid contribution 0.309 -0.366 -0.900 1.019 sum 9.162 14.007 9.325 19.160 Atomic orbital electron populations 1.21764 0.95539 1.02164 1.00501 1.21011 0.95589 0.95044 0.99143 1.21891 1.00502 0.96855 1.00947 1.22585 0.94739 1.05011 0.96694 1.20674 0.95494 0.94486 0.84535 0.91551 1.22718 0.96226 1.00861 0.97015 1.21536 0.95089 0.99304 0.99674 1.21028 0.99701 0.99374 0.95190 1.20895 0.98660 1.02134 0.96436 1.21035 0.82887 1.00196 0.96619 1.48215 1.23453 1.39503 1.23710 1.21349 0.81579 0.77780 0.88564 1.90461 1.28995 1.59347 1.61061 1.21887 1.03031 1.00599 0.91502 1.18878 0.92788 0.92157 0.96030 1.21263 1.11064 1.20745 1.03256 0.92698 1.25014 0.95112 0.96776 0.97429 1.70012 1.15264 1.29811 1.37742 0.86570 0.78207 0.79046 0.84350 1.19778 1.21044 1.21040 0.93542 0.93359 0.92071 0.91164 0.93314 0.93133 0.93302 0.86010 0.93054 0.91492 0.91767 0.91768 0.92906 0.91922 0.91430 0.91276 0.91690 0.88866 0.91365 0.90671 0.90597 0.95873 0.95954 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.19 37.16 0.34 -1.72 16 2 C -0.09 -1.29 2.45 -90.62 -0.22 -1.51 16 3 C -0.14 -1.69 8.93 37.16 0.33 -1.36 16 4 C -0.15 -2.22 3.50 -26.73 -0.09 -2.31 16 5 C 0.15 1.97 1.48 -68.28 -0.10 1.87 16 6 H 0.07 0.76 5.21 -51.93 -0.27 0.49 16 7 C -0.13 -1.56 5.75 -24.49 -0.14 -1.70 16 8 C -0.12 -1.30 5.65 -27.19 -0.15 -1.46 16 9 C -0.12 -1.08 5.75 -28.41 -0.16 -1.24 16 10 C -0.14 -1.42 5.20 -30.19 -0.16 -1.58 16 11 C 0.11 1.27 5.91 -5.20 -0.03 1.23 16 12 N -0.61 -8.68 2.00 -167.52 -0.33 -9.02 16 13 C 0.52 9.66 5.64 -10.98 -0.06 9.60 16 14 O -0.52 -11.51 12.40 5.56 0.07 -11.44 16 15 C -0.13 -2.64 4.01 -27.88 -0.11 -2.75 16 16 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 17 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.43 13.29 55.43 0.74 -26.70 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.19 5.95 -51.93 -0.31 0.89 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.55 6.54 -51.93 -0.34 0.21 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.12 2.21 5.11 -53.11 -0.27 1.94 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.95 8.02 -51.92 -0.42 0.53 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.83 6.83 -51.93 -0.35 0.48 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.07 0.61 6.30 -51.93 -0.33 0.28 16 40 H 0.07 0.80 6.93 -51.93 -0.36 0.44 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.05 6.08 -51.93 -0.32 0.74 16 43 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.07 1.41 7.77 -51.93 -0.40 1.01 16 45 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -31.61 355.27 -9.10 -40.71 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.81 Total: 0.00 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.09 Total: -15.58 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.40 Total: -35.72 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.61 -9.10 -40.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360343143.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.337 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds