Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 C 1.52999 * 109.47067 * 119.99782 * 2 1 3 5 5 C 1.53006 * 109.46972 * 64.99828 * 4 2 1 6 6 C 1.52997 * 109.47065 * 184.95249 * 5 4 2 7 7 H 1.08999 * 109.70120 * 61.31197 * 6 5 4 8 8 C 1.52760 * 109.51197 * 301.19392 * 6 5 4 9 9 C 1.53039 * 109.38038 * 185.70401 * 8 6 5 10 10 C 1.53043 * 109.53894 * 61.24176 * 9 8 6 11 11 C 1.53193 * 109.31287 * 298.63186 * 10 9 8 12 12 N 1.46927 * 109.58461 * 181.66515 * 6 5 4 13 13 C 1.34777 * 120.63298 * 353.41794 * 12 6 5 14 14 O 1.21279 * 119.99493 * 354.19141 * 13 12 6 15 15 C 1.50697 * 120.00168 * 174.18751 * 13 12 6 16 16 C 1.52995 * 109.47327 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47327 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99860 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00279 * 179.72193 * 17 16 15 20 20 N 1.31520 * 119.99920 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00357 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46893 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46865 * 120.00256 * 21 19 17 24 24 H 1.48500 * 109.47184 * 240.00425 * 21 19 17 25 25 H 1.09005 * 109.46908 * 299.99868 * 1 2 3 26 26 H 1.09002 * 109.47127 * 59.99643 * 1 2 3 27 27 H 1.08999 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46590 * 240.00044 * 2 1 3 29 29 H 1.08997 * 109.46440 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47024 * 300.00036 * 3 2 1 31 31 H 1.09001 * 109.46751 * 60.00379 * 3 2 1 32 32 H 1.09003 * 109.47320 * 305.00344 * 4 2 1 33 33 H 1.08996 * 109.47304 * 184.99862 * 4 2 1 34 34 H 1.09002 * 109.46667 * 64.95839 * 5 4 2 35 35 H 1.08999 * 109.47177 * 304.95851 * 5 4 2 36 36 H 1.08998 * 109.56250 * 65.67093 * 8 6 5 37 37 H 1.09001 * 109.36084 * 305.61427 * 8 6 5 38 38 H 1.09002 * 109.46441 * 301.21835 * 9 8 6 39 39 H 1.09006 * 109.44905 * 181.25200 * 9 8 6 40 40 H 1.09004 * 109.49618 * 178.67916 * 10 9 8 41 41 H 1.08998 * 109.49733 * 58.58498 * 10 9 8 42 42 H 1.08999 * 109.58505 * 294.85184 * 11 10 9 43 43 H 1.08998 * 109.58689 * 174.42480 * 11 10 9 44 44 H 1.09000 * 109.47067 * 59.99939 * 15 13 12 45 45 H 1.09004 * 109.47019 * 300.00829 * 15 13 12 46 46 H 1.09003 * 109.46887 * 60.00188 * 16 15 13 47 47 H 1.08999 * 109.46942 * 300.00004 * 16 15 13 48 48 H 0.96992 * 120.00522 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 6 2.0363 -2.8890 2.4914 7 1 1.5155 -2.4259 3.3295 8 6 3.5446 -2.7585 2.6956 9 6 3.9633 -3.5722 3.9222 10 6 3.6310 -5.0487 3.6948 11 6 2.1188 -5.2042 3.5047 12 7 1.6847 -4.3138 2.4196 13 6 0.9819 -4.7959 1.3755 14 8 0.5431 -4.0367 0.5376 15 6 0.7415 -6.2782 1.2491 16 6 -0.0749 -6.5565 -0.0146 17 6 -0.3149 -8.0389 -0.1413 18 1 0.0756 -8.7148 0.6051 19 6 -1.0381 -8.5316 -1.2067 20 7 -1.5182 -7.7080 -2.1127 21 14 -1.3349 -10.3691 -1.3642 22 1 -0.6944 -11.0734 -0.2245 23 1 -2.7954 -10.6373 -1.3535 24 1 -0.7512 -10.8573 -2.6394 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 2.1402 -2.6763 0.3502 35 1 0.5561 -2.2707 1.0535 36 1 3.8028 -1.7106 2.8486 37 1 4.0626 -3.1364 1.8142 38 1 3.4264 -3.2099 4.7990 39 1 5.0359 -3.4619 4.0821 40 1 3.9508 -5.6309 4.5591 41 1 4.1482 -5.4050 2.8040 42 1 1.6049 -4.9336 4.4271 43 1 1.8876 -6.2371 3.2446 44 1 0.1933 -6.6331 2.1218 45 1 1.6979 -6.7973 1.1851 46 1 0.4737 -6.2018 -0.8871 47 1 -1.0313 -6.0375 0.0491 48 1 -2.0267 -8.0545 -2.8624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360366244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = -67.191477 kcal Electronic energy + Delta-G solvation = -23232.589262 eV Core-core repulsion = 20093.267417 eV Total energy + Delta-G solvation = -3139.321845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25406 -37.26997 -36.61770 -33.66926 -32.81842 -32.52937 -30.68019 -28.68828 -27.07343 -26.16891 -24.61954 -24.04682 -22.05114 -21.10265 -20.26723 -19.83878 -18.36350 -16.77861 -15.88473 -15.58012 -15.27574 -15.07486 -14.55310 -14.41546 -14.23459 -13.85792 -13.77609 -13.40034 -13.20834 -12.92979 -12.66926 -12.23497 -12.12773 -12.06587 -11.87639 -11.68438 -11.40373 -11.13605 -11.00642 -10.93725 -10.90913 -10.81140 -10.59648 -10.56677 -10.53532 -10.26299 -10.21637 -9.91311 -9.51943 -9.06347 -8.36017 -8.32340 -8.22590 -5.94546 -3.98605 3.26362 3.33277 3.34686 3.40779 3.44015 4.48142 4.65522 4.75622 4.80926 4.91813 4.97863 5.04393 5.08070 5.29903 5.33135 5.40524 5.44839 5.49165 5.58259 5.62320 5.69437 5.71835 5.78367 5.81802 5.84834 5.90683 5.92062 5.93820 5.99985 6.04502 6.05863 6.23877 6.25088 6.26536 6.29110 6.39649 6.40700 6.64016 6.74474 6.94218 7.07313 7.76785 7.86776 7.89499 8.09411 8.41514 8.84873 9.10296 9.64881 11.16408 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.004363 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.557764 B = 6415.941386 C = 8009.536330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.120 4.120 5 C -0.114 4.114 6 C 0.149 3.851 7 H 0.061 0.939 8 C -0.132 4.132 9 C -0.119 4.119 10 C -0.136 4.136 11 C 0.108 3.892 12 N -0.622 5.622 13 C 0.513 3.487 14 O -0.525 6.525 15 C -0.131 4.131 16 C 0.038 3.962 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.023 0.977 47 H 0.023 0.977 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.697 13.152 12.325 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.158 4.158 5 C -0.152 4.152 6 C 0.045 3.955 7 H 0.079 0.921 8 C -0.171 4.171 9 C -0.156 4.156 10 C -0.175 4.175 11 C -0.015 4.015 12 N -0.358 5.358 13 C 0.303 3.697 14 O -0.401 6.401 15 C -0.170 4.170 16 C 0.001 3.999 17 C -0.564 4.564 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.337 13.556 11.695 20.674 hybrid contribution -0.047 -1.062 -0.001 1.063 sum 10.290 12.495 11.694 19.969 Atomic orbital electron populations 1.21896 0.95189 1.02765 1.00864 1.21054 0.96155 0.95382 0.98732 1.21849 1.00538 0.96558 1.01346 1.21839 1.00026 0.96573 0.97368 1.22262 1.04907 0.92393 0.95600 1.21113 0.94111 0.81303 0.98924 0.92081 1.21977 0.96322 1.00214 0.98547 1.21512 1.00799 0.95262 0.98050 1.21931 0.96421 0.96815 1.02289 1.21681 0.94236 0.95386 0.90191 1.48338 1.56246 1.08245 1.22975 1.21482 0.76248 0.92308 0.79637 1.90665 1.49454 1.58626 1.41342 1.21906 1.02274 0.89302 1.03559 1.18891 0.94941 0.95958 0.90145 1.21264 1.34041 0.92462 1.08611 0.92658 1.25017 0.95775 0.97684 0.95874 1.70007 1.36115 1.34164 1.12546 0.86558 0.77894 0.85708 0.77943 1.19768 1.21037 1.21030 0.93274 0.93241 0.91370 0.91257 0.93086 0.93003 0.93028 0.92657 0.92607 0.91316 0.88034 0.91018 0.91598 0.92057 0.92051 0.91017 0.91374 0.91928 0.89056 0.90561 0.90507 0.95897 0.95855 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.96 37.16 0.33 -1.55 16 2 C -0.09 -1.12 2.92 -90.62 -0.26 -1.39 16 3 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 4 C -0.12 -1.40 4.15 -26.73 -0.11 -1.51 16 5 C -0.11 -1.69 3.04 -26.73 -0.08 -1.77 16 6 C 0.15 1.96 3.02 -67.82 -0.20 1.76 16 7 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 8 C -0.13 -1.43 4.79 -26.83 -0.13 -1.55 16 9 C -0.12 -1.09 5.89 -26.69 -0.16 -1.25 16 10 C -0.14 -1.34 6.08 -26.61 -0.16 -1.50 16 11 C 0.11 1.27 6.35 -3.71 -0.02 1.25 16 12 N -0.62 -9.33 2.98 -165.47 -0.49 -9.82 16 13 C 0.51 9.94 7.53 -10.99 -0.08 9.85 16 14 O -0.53 -11.77 11.54 5.56 0.06 -11.71 16 15 C -0.13 -2.69 3.99 -27.89 -0.11 -2.80 16 16 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 17 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.01 6.46 -51.93 -0.34 0.68 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.60 6.82 -51.93 -0.35 0.24 16 34 H 0.07 1.19 7.26 -51.93 -0.38 0.81 16 35 H 0.10 1.78 4.42 -51.93 -0.23 1.55 16 36 H 0.07 0.67 6.85 -51.93 -0.36 0.32 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 44 H 0.08 1.45 7.72 -51.93 -0.40 1.05 16 45 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 46 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -31.90 363.01 -9.50 -41.40 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -9.07 Total: -0.99 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.18 Total: -14.31 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.24 Total: -36.58 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.06 Total: -11.71 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.90 -9.50 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360366244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.792 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds